NO07G04130, NO07G04130 (gene) Nannochloropsis oceanica

Overview
NameNO07G04130
Unique NameNO07G04130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1308
Alignment locationchr7:1152325..1153632 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1152325..1153632 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0038023signaling receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO07G04130 vs. NCBI_GenBank
Match: EWM26954.1 (hypothetical protein Naga_100304g5 [Nannochloropsis gaditana])

HSP 1 Score: 240.7 bits (613), Expect = 5.500e-60
Identity = 137/278 (49.28%), Postives = 170/278 (61.15%), Query Frame = 0 
Query:    3 MVRIKAAGSFLSVAWLAGTMAAQAADPMSCSNSHFLALVVPEGSSVDVLRIPTPATHIASNKAPEISAAELEEVHHRVLGHPAHAYKQTLPSLDVFASHGAGAVFVALLDGVETTTSYVQGLQAARGLYQARVGGLKDLHAVAKRYAGNAXXXXXXXXXXXXXXXXXXXXXPATRDLPVCQXXXXXXXXXAIDPLSQKIDLSFIEKEMEAVASATEIGNTFNVHGAADRRFLSELQALLKLVTLLPSTPSPPSSSPDFILFAADGLRTLQLTYGPSSP 281
            M R +AAG+F  +AW+    AA  AD M+CSNSHF ALVVP+ +    L     +    S   PEISA EL+EVH RV+G  A AY++ LPSLDVFA H    VFVALLDGV  TT Y++ LQA  G+Y+ARV G KDLHAVA  Y  ++                     PATR LPVCQ         + DPL  KIDL+FI KE+  + S T++G TF + G ADRRFL+E+Q+LL+L  LLP  P    + PD IL+AADGLR L++ YG SSP
Sbjct:    1 MARRQAAGAFWCLAWMG---AAHGADVMTCSNSHFRALVVPQSNGHSTLLHTPTSPQGNSGLVPEISAEELQEVHQRVMGRHARAYREVLPSLDVFAPHPPSGVFVALLDGVSATTPYIERLQAVEGIYEARVAGFKDLHAVATSYGNSS------RPYPPSSLVACLACDPATRALPVCQ--QAAKNRVSEDPLLHKIDLAFIAKELPGLVSPTDLGKTFEMGGVADRRFLAEVQSLLRLPFLLPGKPGAQGNGPDVILYAADGLRGLEVAYGVSSP 267
The following BLAST results are available for this feature:
BLAST of NO07G04130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26954.15.500e-6049.28hypothetical protein Naga_100304g5 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G04130.1NO07G04130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581426gene_2760Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G04130.1NO07G04130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G04130 ID=NO07G04130|Name=NO07G04130|organism=Nannochloropsis oceanica|type=gene|length=1308bp
ATGATGATGGTGCGCATCAAGGCGGCAGGATCATTCCTGTCCGTGGCGTG
GCTGGCGGGGACTATGGCCGCTCAGGCGGCAGATCCCATGTCCTGCTCCA
ACTCCCACTTCCTTGCCTTGGTCGTGCCCGAGGGCAGCTCCGTCGACGTC
CTGCGCATCCCCACGgtacgtctgcaggtgctattttggtggaaagtggt
agtctttttggtccgggccttatcttttgatctcgtcatctccgtccgcc
gtcactcgtcctcatcgcatctccgcaccgttctcctccgtctccttccg
cttcctcccccctcatgcacagCCCGCAACGCACATTGCGTCCAACAAAG
CCCCTGAAATCTCCGCGGCAGAACTGGAAGAAGTGCACCACCGCGTGCTG
GGCCACCCGGCGCATGCCTACAAACAAACCTTGCCTTCTCTGGACGTCTT
TGCGTCGCACGGCGCAGGCGCGGTGTTTGTTGCTCTATTAGATGGCGTGG
AGACGACAACAAGCTACGTCCAAGGGCTGCAGGCGGCTCGAGGCTTGTAT
CAGGCGCGCGTGGGAGGgtaagtgaagaaggaaggaggagggaaggagag
aggtaagagcagcccggcagacgtgaggagacaggcaggacgtacatgta
gacctttgtcatctacacatcccttgtgattcatttttcccctcaccttt
cctgtacagTCTTAAGGACCTGCATGCTGTAGCTAAACGCTACGCGGGCA
ATGCCACCTCCTCCTCCGCGTCTTCCTCCTCGTCCTCCTCCTCTTTCGTC
GCCTGCATCGCTTGCGACCCAGCCACGCGTGACTTGCCCGTTTGCCAACA
GCAGCAGCAGCAGCAGGAAGTGGTGGCAATTGATCCGCTGTCGCAAAAGA
TTGATCTGTCCTTCATCGAGAAGGAGATGGAGGCGGTGGCCTCGGCGACC
GAGATTGGTAACACGTTCAACGTCCACGGAGCGgtagggagggagggagg
gagggagggagggatggaggcgtggattaccgcattgtctcttctgatga
tcgttggttgtcatgacgctattatgttctctctctcattttccctcatt
ccttctaccttccccccctccctcgcagGCTGATCGCCGTTTCCTCTCCG
AGCTCCAGGCCCTGCTTAAGCTCGTCACCCTCCTTCCCTCCACCCCTTCC
CCCCCCTCGTCCTCCCCTGACTTCATCCTTTTCGCGGCTGATGGATTGCG
GACCCTGCAGCTCACGTACGGCCCTTCCTCCCCCCCTCGTCTCTGGCGAA
GAGGATGA
back to top

protein sequence of NO07G04130.1

>NO07G04130.1-protein ID=NO07G04130.1-protein|Name=NO07G04130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MMMVRIKAAGSFLSVAWLAGTMAAQAADPMSCSNSHFLALVVPEGSSVDV
LRIPTPATHIASNKAPEISAAELEEVHHRVLGHPAHAYKQTLPSLDVFAS
HGAGAVFVALLDGVETTTSYVQGLQAARGLYQARVGGLKDLHAVAKRYAG
NATSSSASSSSSSSSFVACIACDPATRDLPVCQQQQQQQEVVAIDPLSQK
IDLSFIEKEMEAVASATEIGNTFNVHGAADRRFLSELQALLKLVTLLPST
PSPPSSSPDFILFAADGLRTLQLTYGPSSPPRLWRRG*
back to top
Synonyms
Publications