NO07G04130.1, NO07G04130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04130.1
Unique NameNO07G04130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length864
Alignment locationchr7:1152325..1153632 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1152325..1153632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04130.1 vs.
Match: EWM26954.1 (hypothetical protein Naga_100304g5 [Nannochloropsis gaditana])

HSP 1 Score: 261.9 bits (668), Expect = 2.300e-66
Identity = 148/278 (53.24%), Postives = 184/278 (66.19%), Query Frame = 0 
Query:    3 MVRIKAAGSFLSVAWLAGTMAAQAADPMSCSNSHFLALVVPEGSSVDVLRIPTPATHIASNKAPEISAAELEEVHHRVLGHPAHAYKQTLPSLDVFASHGAGAVFVALLDGVETTTSYVQGLQAARGLYQARVGGLKDLHAVAKRYAGNATSSSASSSSSSSSFVACIACDPATRDLPVCQQQQQQQEVVAIDPLSQKIDLSFIEKEMEAVASATEIGNTFNVHGAADRRFLSELQALLKLVTLLPSTPSPPSSSPDFILFAADGLRTLQLTYGPSSP 281
            M R +AAG+F  +AW+    AA  AD M+CSNSHF ALVVP+ +    L     +    S   PEISA EL+EVH RV+G  A AY++ LPSLDVFA H    VFVALLDGV  TT Y++ LQA  G+Y+ARV G KDLHAVA  Y       ++S     SS VAC+ACDPATR LPVCQQ  + +  V+ DPL  KIDL+FI KE+  + S T++G TF + G ADRRFL+E+Q+LL+L  LLP  P    + PD IL+AADGLR L++ YG SSP
Sbjct:    1 MARRQAAGAFWCLAWMG---AAHGADVMTCSNSHFRALVVPQSNGHSTLLHTPTSPQGNSGLVPEISAEELQEVHQRVMGRHARAYREVLPSLDVFAPHPPSGVFVALLDGVSATTPYIERLQAVEGIYEARVAGFKDLHAVATSY------GNSSRPYPPSSLVACLACDPATRALPVCQQAAKNR--VSEDPLLHKIDLAFIAKELPGLVSPTDLGKTFEMGGVADRRFLAEVQSLLRLPFLLPGKPGAQGNGPDVILYAADGLRGLEVAYGVSSP 267
The following BLAST results are available for this feature:
BLAST of NO07G04130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26954.12.300e-6653.24hypothetical protein Naga_100304g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04130NO07G04130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04130.1NO07G04130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04130.1.cds1NO07G04130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04130.1.cds2NO07G04130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04130.1.cds3NO07G04130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04130.1.cds4NO07G04130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04130.1 ID=NO07G04130.1|Name=NO07G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=864bp
ATGATGATGGTGCGCATCAAGGCGGCAGGATCATTCCTGTCCGTGGCGTG
GCTGGCGGGGACTATGGCCGCTCAGGCGGCAGATCCCATGTCCTGCTCCA
ACTCCCACTTCCTTGCCTTGGTCGTGCCCGAGGGCAGCTCCGTCGACGTC
CTGCGCATCCCCACGCCCGCAACGCACATTGCGTCCAACAAAGCCCCTGA
AATCTCCGCGGCAGAACTGGAAGAAGTGCACCACCGCGTGCTGGGCCACC
CGGCGCATGCCTACAAACAAACCTTGCCTTCTCTGGACGTCTTTGCGTCG
CACGGCGCAGGCGCGGTGTTTGTTGCTCTATTAGATGGCGTGGAGACGAC
AACAAGCTACGTCCAAGGGCTGCAGGCGGCTCGAGGCTTGTATCAGGCGC
GCGTGGGAGGTCTTAAGGACCTGCATGCTGTAGCTAAACGCTACGCGGGC
AATGCCACCTCCTCCTCCGCGTCTTCCTCCTCGTCCTCCTCCTCTTTCGT
CGCCTGCATCGCTTGCGACCCAGCCACGCGTGACTTGCCCGTTTGCCAAC
AGCAGCAGCAGCAGCAGGAAGTGGTGGCAATTGATCCGCTGTCGCAAAAG
ATTGATCTGTCCTTCATCGAGAAGGAGATGGAGGCGGTGGCCTCGGCGAC
CGAGATTGGTAACACGTTCAACGTCCACGGAGCGGCTGATCGCCGTTTCC
TCTCCGAGCTCCAGGCCCTGCTTAAGCTCGTCACCCTCCTTCCCTCCACC
CCTTCCCCCCCCTCGTCCTCCCCTGACTTCATCCTTTTCGCGGCTGATGG
ATTGCGGACCCTGCAGCTCACGTACGGCCCTTCCTCCCCCCCTCGTCTCT
GGCGAAGAGGATGA
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protein sequence of NO07G04130.1

>NO07G04130.1-protein ID=NO07G04130.1-protein|Name=NO07G04130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MMMVRIKAAGSFLSVAWLAGTMAAQAADPMSCSNSHFLALVVPEGSSVDV
LRIPTPATHIASNKAPEISAAELEEVHHRVLGHPAHAYKQTLPSLDVFAS
HGAGAVFVALLDGVETTTSYVQGLQAARGLYQARVGGLKDLHAVAKRYAG
NATSSSASSSSSSSSFVACIACDPATRDLPVCQQQQQQQEVVAIDPLSQK
IDLSFIEKEMEAVASATEIGNTFNVHGAADRRFLSELQALLKLVTLLPST
PSPPSSSPDFILFAADGLRTLQLTYGPSSPPRLWRRG*
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mRNA from alignment at chr7:1152325..1153632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04130.1 ID=NO07G04130.1|Name=NO07G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at chr7:1152325..1153632+ (Nannochloropsis oceanica)
ATGATGATGGTGCGCATCAAGGCGGCAGGATCATTCCTGTCCGTGGCGTG
GCTGGCGGGGACTATGGCCGCTCAGGCGGCAGATCCCATGTCCTGCTCCA
ACTCCCACTTCCTTGCCTTGGTCGTGCCCGAGGGCAGCTCCGTCGACGTC
CTGCGCATCCCCACGGTACGTCTGCAGGTGCTATTTTGGTGGAAAGTGGT
AGTCTTTTTGGTCCGGGCCTTATCTTTTGATCTCGTCATCTCCGTCCGCC
GTCACTCGTCCTCATCGCATCTCCGCACCGTTCTCCTCCGTCTCCTTCCG
CTTCCTCCCCCCTCATGCACAGCCCGCAACGCACATTGCGTCCAACAAAG
CCCCTGAAATCTCCGCGGCAGAACTGGAAGAAGTGCACCACCGCGTGCTG
GGCCACCCGGCGCATGCCTACAAACAAACCTTGCCTTCTCTGGACGTCTT
TGCGTCGCACGGCGCAGGCGCGGTGTTTGTTGCTCTATTAGATGGCGTGG
AGACGACAACAAGCTACGTCCAAGGGCTGCAGGCGGCTCGAGGCTTGTAT
CAGGCGCGCGTGGGAGGGTAAGTGAAGAAGGAAGGAGGAGGGAAGGAGAG
AGGTAAGAGCAGCCCGGCAGACGTGAGGAGACAGGCAGGACGTACATGTA
GACCTTTGTCATCTACACATCCCTTGTGATTCATTTTTCCCCTCACCTTT
CCTGTACAGTCTTAAGGACCTGCATGCTGTAGCTAAACGCTACGCGGGCA
ATGCCACCTCCTCCTCCGCGTCTTCCTCCTCGTCCTCCTCCTCTTTCGTC
GCCTGCATCGCTTGCGACCCAGCCACGCGTGACTTGCCCGTTTGCCAACA
GCAGCAGCAGCAGCAGGAAGTGGTGGCAATTGATCCGCTGTCGCAAAAGA
TTGATCTGTCCTTCATCGAGAAGGAGATGGAGGCGGTGGCCTCGGCGACC
GAGATTGGTAACACGTTCAACGTCCACGGAGCGGTAGGGAGGGAGGGAGG
GAGGGAGGGAGGGATGGAGGCGTGGATTACCGCATTGTCTCTTCTGATGA
TCGTTGGTTGTCATGACGCTATTATGTTCTCTCTCTCATTTTCCCTCATT
CCTTCTACCTTCCCCCCCTCCCTCGCAGGCTGATCGCCGTTTCCTCTCCG
AGCTCCAGGCCCTGCTTAAGCTCGTCACCCTCCTTCCCTCCACCCCTTCC
CCCCCCTCGTCCTCCCCTGACTTCATCCTTTTCGCGGCTGATGGATTGCG
GACCCTGCAGCTCACGTACGGCCCTTCCTCCCCCCCTCGTCTCTGGCGAA
GAGGATGA
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Coding sequence (CDS) from alignment at chr7:1152325..1153632+

>NO07G04130.1 ID=NO07G04130.1|Name=NO07G04130.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr7:1152325..1153632+ (Nannochloropsis oceanica)
ATGATGATGGTGCGCATCAAGGCGGCAGGATCATTCCTGTCCGTGGCGTG
GCTGGCGGGGACTATGGCCGCTCAGGCGGCAGATCCCATGTCCTGCTCCA
ACTCCCACTTCCTTGCCTTGGTCGTGCCCGAGGGCAGCTCCGTCGACGTC
CTGCGCATCCCCACGCCCGCAACGCACATTGCGTCCAACAAAGCCCCTGA
AATCTCCGCGGCAGAACTGGAAGAAGTGCACCACCGCGTGCTGGGCCACC
CGGCGCATGCCTACAAACAAACCTTGCCTTCTCTGGACGTCTTTGCGTCG
CACGGCGCAGGCGCGGTGTTTGTTGCTCTATTAGATGGCGTGGAGACGAC
AACAAGCTACGTCCAAGGGCTGCAGGCGGCTCGAGGCTTGTATCAGGCGC
GCGTGGGAGGTCTTAAGGACCTGCATGCTGTAGCTAAACGCTACGCGGGC
AATGCCACCTCCTCCTCCGCGTCTTCCTCCTCGTCCTCCTCCTCTTTCGT
CGCCTGCATCGCTTGCGACCCAGCCACGCGTGACTTGCCCGTTTGCCAAC
AGCAGCAGCAGCAGCAGGAAGTGGTGGCAATTGATCCGCTGTCGCAAAAG
ATTGATCTGTCCTTCATCGAGAAGGAGATGGAGGCGGTGGCCTCGGCGAC
CGAGATTGGTAACACGTTCAACGTCCACGGAGCGGCTGATCGCCGTTTCC
TCTCCGAGCTCCAGGCCCTGCTTAAGCTCGTCACCCTCCTTCCCTCCACC
CCTTCCCCCCCCTCGTCCTCCCCTGACTTCATCCTTTTCGCGGCTGATGG
ATTGCGGACCCTGCAGCTCACGTACGGCCCTTCCTCCCCCCCTCGTCTCT
GGCGAAGAGGATGA
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Synonyms
Publications