NO07G03880, NO07G03880 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G03880 vs. NCBI_GenBank
Match: XP_005852771.1 (histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526] >EKU23062.1 histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 382.5 bits (981), Expect = 1.800e-102 Identity = 208/400 (52.00%), Postives = 252/400 (63.00%), Query Frame = 0 Query: 16 SVGAAV---IVTVIEELLGQPLPQLTKLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPLACLDHDIPGHFERPARVISILNALKQYAPP--LSLPPTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEXXXXXXXXXXXXXXXXXXXXXXXXXVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEV 411 +VGAA + VIEE LG+PLP+L K +SP ACL H+IPGHFERPAR+ +IL+AL PP AFLLS+ D P AT EQL RFH+ QH+ L SLFA S+ +Y +++DID DT VCPGTEEA LRAAGAACRGV+EV+EGRAE+V+C+VRPPGHHATP ++MGFCF N+ GVAAMHARA++GV+RVA+LDPDVHHGNGTQD DPDLFYASTHVGYGFYPG+G +++ +GRE RLVNVPFREGEGSS++FRQAW +EIFP L+ F+PELI++SMGFDA EDPLGEMEL +D+ W +R V V Sbjct: 12 TVGAATVGGVNAVIEEWLGKPLPRLCK---------------GVPPCPQARPSFRLPPPEPLPPYPLLVISPPACLKHNIPGHFERPARLTAILHALH---PPSRXXXXXXXXXXXXXXXXAFLLSDADCPRATHEQLARFHTTQHLAHLASLFAESQTLAATSQVQEPSHLDPSSSPHLF-----------PSYPPASLIDIDGDTTVCPGTEEATLRAAGAACRGVEEVMEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRV 382
BLAST of NO07G03880 vs. NCBI_GenBank
Match: EWM26976.1 (histone deacetylase superfamily protein [Nannochloropsis gaditana]) HSP 1 Score: 271.2 bits (692), Expect = 5.900e-69 Identity = 121/169 (71.60%), Postives = 147/169 (86.98%), Query Frame = 0 Query: 242 LEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEV 411 +EGRAE+V+C+VRPPGHHATP ++MGFCF N+ GVAAMHARA++GV+RVA+LDPDVHHGNGTQD DPDLFYASTHVGYGFYPG+G +++ +GRE RLVNVPFREGEGSS++FRQAW +EIFP L+ F+PELI++SMGFDA EDPLGEMEL +D+ W +R V V Sbjct: 1 MEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSREVRRV 169
BLAST of NO07G03880 vs. NCBI_GenBank
Match: WP_056008792.1 (acetoin utilization protein [Frateuria sp. Soil773] >KRE88772.1 acetoin utilization protein [Frateuria sp. Soil773]) HSP 1 Score: 230.7 bits (587), Expect = 8.800e-57 Identity = 140/334 (41.92%), Postives = 175/334 (52.40%), Query Frame = 0 Query: 86 ACLDHDI-PGHFERPARVISILNALKQYAPPLSLPPTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEXXXXXXXXXXXXXXXXXXXXXXXXXVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEVARE--GGR 417 ACL HD PGH E P+R+ ++L AL L ++P ATREQL R H+ H+E +F+ A DE DT + PG+ EAALRAAGA VD VL+G FC VRPPGHHATPDRAMGFC FNNV VAA HA A HG+KRVAI D DVHHGNGTQD +P + + S+H YP SG+ E+E G +VN G S FR+ W+ + P L AF P+L+L+S GFDA R DPL ++ L A+DY W+T ++E+AR+ GGR Sbjct: 9 ACLQHDPGPGHAESPSRLRAVLQALDH------------------DRFASLDRVEAPRATREQLLRVHTPAHLERIFAGEPADGTAALDE-----------------------------------------DTAMSPGSLEAALRAAGACVAAVDAVLQGAVARAFCAVRPPGHHATPDRAMGFCLFNNVAVAAAHALAAHGLKRVAIADFDVHHGNGTQDVFAAEPRVLFLSSHQS-PLYPDSGY--EDEHGAGNIVNGCLSPG-ADSLEFRELWDGLLLPRLHAFRPQLVLVSAGFDAHRNDPLADLRLGAEDYAWITGRLVELARQHAGGR 279
BLAST of NO07G03880 vs. NCBI_GenBank
Match: XP_012198666.1 (hypothetical protein SPRG_04346 [Saprolegnia parasitica CBS 223.65] >KDO30444.1 hypothetical protein SPRG_04346 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 228.8 bits (582), Expect = 3.300e-56 Identity = 136/332 (40.96%), Postives = 183/332 (55.12%), Query Frame = 0 Query: 82 LSPLACLDHDIPGHFERPARVISILNALKQYAPPLSLPPTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEXXXXXXXXXXXXXXXXXXXXXXXXXVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEVARE 414 LS AC+ H + GH ERP RV +L+ L P +LP + SP AT EQL RFH+ H++++ + + + + K++ + +D+DADT + T EAAL+AAGA GVD VL G FC VRPPGHHA P +AMGFC+FNNVGVAAMHA A+HG+ RVAI+D DVHHGNGTQ P+L Y STH F+P +GH E + NVP G SS FR A+ ++ P ++AF P+LIL+S GFDA +DPL EM+L +D++W+T+ + +A E Sbjct: 16 LSDPACVKHHVRGHPERPERVQVVLDQLATSFP--TLPHWTA----------------SPAATVEQLERFHTSSHVQSVLQWCGKIERCMVELDTLRESDETQERRNVL------------KSFEN---VDVDADTTLMRYTREAALKAAGATIAGVDAVLSGDFTNAFCAVRPPGHHAEPFKAMGFCYFNNVGVAAMHAVAQHGLTRVAIVDFDVHHGNGTQTKAATTPELLYVSTHQA-PFFPHTGHAAE---NSAHVWNVPMAAGT-SSYAFRHAFVDQVEPQVRAFAPQLILISAGFDAHEDDPLAEMKLTDEDFYWMTQRLTILAWE 309
BLAST of NO07G03880 vs. NCBI_GenBank
Match: WP_091340205.1 (acetoin utilization protein [Frateuria terrea] >SEJ44708.1 Acetoin utilization deacetylase AcuC [Frateuria terrea] >SFP77764.1 Acetoin utilization deacetylase AcuC [Frateuria terrea]) HSP 1 Score: 227.6 bits (579), Expect = 7.400e-56 Identity = 139/334 (41.62%), Postives = 176/334 (52.69%), Query Frame = 0 Query: 86 ACLDHDI-PGHFERPARVISILNALKQYAPPLSLPPTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEXXXXXXXXXXXXXXXXXXXXXXXXXVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEVAR--EGGR 417 ACL HD PGH E PAR+ ++L AL + L ++PLA+ E L R H ++ AR A+ E +L +D DT + P + EAALRAAGA VD L+ RA FC VRPPGHHAT D+AMGFC FNNV V A HA A+HG++RVAI D DVHHGNGTQD +P + + S+H YPGSG +E G L+N P G G S FRQ W++++ P L AF P+L+L+S GFDA R DPL ++EL A DY WLT ++E+AR GGR Sbjct: 9 ACLQHDPGPGHPESPARLRAVLAALDR------------------DRFAALDRIEAPLASTEALERVHDPAYV-------ARILASAPAE----------------------------------GVLRLDEDTVMSPASAEAALRAAGAVVAAVDAALDERASRAFCAVRPPGHHATADQAMGFCLFNNVAVGAAHALAEHGLERVAIADFDVHHGNGTQDIFAREPRVLFVSSHQS-PLYPGSGGADET--GVGNLLNAPLPPGTG-SLAFRQTWDEQLLPRLDAFRPQLLLISAGFDAHRADPLAQLELGADDYAWLTSRLLEIARAHAGGR 279
BLAST of NO07G03880 vs. NCBI_GenBank
Match: WP_092704282.1 (acetoin utilization protein [Rhodanobacter glycinis] >SFK97812.1 Acetoin utilization deacetylase AcuC [Rhodanobacter glycinis]) HSP 1 Score: 227.6 bits (579), Expect = 7.400e-56 Identity = 138/334 (41.32%), Postives = 178/334 (53.29%), Query Frame = 0 Query: 86 ACLDHDI-PGHFERPARVISILNALKQYAPPLSLPPTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEXXXXXXXXXXXXXXXXXXXXXXXXXVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEVAR--EGGR 417 +CL HD PGH E PAR+ ++L+AL L ++P ATREQL R H H+E + A E +L +D DT + PG+ EAALRAAGA VD V+ G FC VRPPGHHATPD AMGFC FNNV VAA HA A HG+KRVAI D DVHHGNGTQ +P + +AS+H YP +G +E+E G G +VN G+G S FR+ W+ + P L AF+P+L+L+S GFDA R+DPL ++L ++DY W+T ++E+AR GGR Sbjct: 9 SCLQHDTGPGHPESPARLAAVLHALDH------------------DRFAALDRIEAPRATREQLLRVHRAGHVERILD-------AAPSE----------------------------------GLLQLDEDTLMSPGSAEAALRAAGAMVAAVDAVIGGECRHAFCAVRPPGHHATPDHAMGFCLFNNVAVAAAHALAAHGLKRVAIADFDVHHGNGTQAIFEREPRVLFASSHES-PLYPNTG-REDERG-VGNIVNGCLSAGDG-SWAFRELWDGLLLPRLHAFKPQLVLVSAGFDAHRDDPLAGLQLGSEDYAWITAKLVELARAHAGGR 279
BLAST of NO07G03880 vs. NCBI_GenBank
Match: WP_048670274.1 (acetoin utilization protein [Candidatus Competibacter denitrificans] >CDI01149.1 Histone deacetylase superfamily protein [Candidatus Competibacter denitrificans Run_A_D11]) HSP 1 Score: 227.3 bits (578), Expect = 9.700e-56 Identity = 133/329 (40.43%), Postives = 170/329 (51.67%), Query Frame = 0 Query: 86 ACLDHDI-PGHFERPARVISILNALKQYAPPLSLPPTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEXXXXXXXXXXXXXXXXXXXXXXXXXVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEVARE 414 ACL+HD PGH E AR+ +IL ALK P L ++P AT EQL R H+ HIE S R N ID DT V P + AALRAAGA C VD VL+G A + FC +RPPGHHA P++AMGFC FNN+ + A HARA HG++RVA +D DVHHGNGTQ DP Y STH Y YPG+G ++E +VN+P G+++ + AW+++I P L+ F+P+LIL+S GFDA R DPL + DY WLT ++ +A E Sbjct: 10 ACLEHDPGPGHPESSARLSAILAALK------------------APQFAALQWREAPTATVEQLARIHTPAHIERTLSHIPR-----------------------------------------NGYQAIDGDTVVSPQSGTAALRAAGAVCAAVDAVLQGEANSAFCAIRPPGHHAEPNQAMGFCLFNNIAIGAAHARAVHGLERVAAIDFDVHHGNGTQAAFEHDPAYLYISTHQAY-IYPGTGRRDER--GINNIVNIPLLANSGTAE-LQHAWQEDIEPALRRFQPQLILISAGFDAHRLDPLAGLTFTETDYAWLTEQILAIAAE 275
BLAST of NO07G03880 vs. NCBI_GenBank
Match: OUX91381.1 (acetoin utilization protein [Candidatus Endolissoclinum sp. TMED26]) HSP 1 Score: 227.3 bits (578), Expect = 9.700e-56 Identity = 135/330 (40.91%), Postives = 174/330 (52.73%), Query Frame = 0 Query: 87 CLDHDI-PGHFERPARVISILNAL--KQYAPPLSLPPTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEXXXXXXXXXXXXXXXXXXXXXXXXXVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEVARE 414 C+ HD PGH E+PAR+ ++ +AL ++A L P AT Q+TR H +H+E L AV E + IDADTF+ PG+ AAL AAGAAC VD V+ G A FC VRPPGHHA +AMGFC FNNV +AA HAR HG+ RVA++D DVHHGNGTQ LF+AS+H Y FYPGSG + E G G + N P G GS++ FR AW ++ P L+AF+P+L+++S GFD R+DPL E L+ DY W+T ++ VA E Sbjct: 11 CIAHDPGPGHPEQPARLAAVRDALAAAEFAD--------------------LKRQTPPPATITQITRVHPREHVEGLLQ-------AVPSEGR----------------------------------VMIDADTFMSPGSGRAALLAAGAACAAVDAVIGGAATNAFCAVRPPGHHAETAQAMGFCLFNNVAIAAEHARQAHGLTRVAVVDFDVHHGNGTQHSFAHQEGLFFASSH-QYPFYPGSGAESETGG--GNIHNAPLPAGAGSTE-FRHAWSHQLLPALRAFQPQLVIVSAGFDGHRDDPLAEFALDDDDYAWITDALLTVAAE 275
BLAST of NO07G03880 vs. NCBI_GenBank
Match: WP_088153128.1 (acetoin utilization protein [Inquilinus limosus] >OWJ65011.1 acetoin utilization protein [Inquilinus limosus]) HSP 1 Score: 227.3 bits (578), Expect = 9.700e-56 Identity = 138/334 (41.32%), Postives = 175/334 (52.40%), Query Frame = 0 Query: 86 ACLDHDI-PGHFERPARVISILNALKQYAPPLSLPPTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEXXXXXXXXXXXXXXXXXXXXXXXXXVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEVARE--GGR 417 AC+ HD PGH ERP R+ ++L AL+ S LL ++P AT EQ+ H + L AAV ++ + IDADT + PG+ AALRAAGA C VD VL G A FC VRPPGHHA RAMGFC FN+V +AAMHAR HG++R+A++D DVHHGNGTQD +PDLFYASTH YPG+G E+E G G ++N P G + FR+A E+ + P + AF PEL+L+S GFDA DPL +EL D+ W T +M +A GGR Sbjct: 10 ACIGHDTGPGHPERPDRLRAVLTALED------------------ESFALLQRREAPEATIEQIALAHPDAFVRRLL-------AAVPED----------------------------------GLQPIDADTVLSPGSGAAALRAAGAGCAAVDAVLAGEARNAFCAVRPPGHHAEATRAMGFCLFNSVAIAAMHARLAHGLQRIAVVDFDVHHGNGTQDIFWSEPDLFYASTHQS-PLYPGTG-SEDETGVAGNILNAPLPPMSGGVE-FRRAMERIVLPAVDAFAPELLLISAGFDAHARDPLAHLELHEGDFAWATLELMRLADRHCGGR 281
BLAST of NO07G03880 vs. NCBI_GenBank
Match: WP_037453424.1 (acetoin utilization protein [Skermanella stibiiresistens] >EWY39790.1 acetoin utilization protein [Skermanella stibiiresistens SB22]) HSP 1 Score: 226.9 bits (577), Expect = 1.300e-55 Identity = 137/329 (41.64%), Postives = 170/329 (51.67%), Query Frame = 0 Query: 86 ACLDHDIP-GHFERPARVISILNALKQYAPPLSLPPTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEXXXXXXXXXXXXXXXXXXXXXXXXXVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEVARE 414 +C+DHD GH E P R+ ++L AL+ A L +P A EQL R H +IE R AA+ E ++++D DT +CP + EAALRAAGA C VD V+ G A FC RPPGHHA +RAMGFC FNNV V A AR HG+ RVA++D DVHHGNGTQD DP LFYASTH + YP +G EE G +VNVP E GS + FR A +FP L+ F+PELI++S GFDA DPL + L DY W+TR + E+ARE Sbjct: 10 SCIDHDTGIGHPECPERLKAVLAALEGEA------------------FHFLDRRVAPRAEVEQLARVHPADYIE-------RVLAAIPSE----------------------------------GMVELDNDTILCPSSGEAALRAAGAVCAAVDAVMSGEARNAFCATRPPGHHAERERAMGFCLFNNVAVGAEQARKVHGISRVAVIDFDVHHGNGTQDIFQDDPGLFYASTHQAH-LYPNTG-LPEERGVADNIVNVPLPEMAGSPE-FRHAMMTRVFPALEHFQPELIMISAGFDAHTRDPLASLHLVDDDYVWVTRKLGELARE 276 The following BLAST results are available for this feature:
BLAST of NO07G03880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G03880 ID=NO07G03880|Name=NO07G03880|organism=Nannochloropsis oceanica|type=gene|length=2447bpback to top protein sequence of NO07G03880.2 >NO07G03880.2-protein ID=NO07G03880.2-protein|Name=NO07G03880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=504bpback to top protein sequence of NO07G03880.1 >NO07G03880.1-protein ID=NO07G03880.1-protein|Name=NO07G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bpback to top Synonyms
Publications
|