NO07G03880.2, NO07G03880.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03880.2
Unique NameNO07G03880.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2275
Alignment locationchr7:1081196..1083642 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1081196..1083642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO07G03880.2 vs.
Match: XP_005852771.1 (histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526]; EKU23062.1 histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 397.9 bits (1021), Expect = 4.700e-107
Identity = 235/408 (57.60%), Postives = 285/408 (69.85%), Query Frame = 0 
Query:   88 GQPLPQLTKLGTTTVTTTPRASAFPPPPPPPPPPPPPPPPPPPPPPHPLLILSPLACLDHDIPGHFERPARVISILNALKQYAPPLSLP--PTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEGEEDGEEGGKKGGKEGGRARRASERVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEVAREGGRR-GRGRGRGGNVRCCRCWRE 493
            G+PLP+L K                 PP P   P    PPP P PP+PLL++SP ACL H+IPGHFERPAR+ +IL+AL    PP  LP  P   +PP LPPSAFLLS+ D P AT EQL RFH+ QH+  L SLFA S+        ++                 +S  + P +Y   +++DID DT VCPGTEEA LRAAGAACRGV+EV+EGRAE+V+C+VRPPGHHATP ++MGFCF N+ GVAAMHARA++GV+RVA+LDPDVHHGNGTQD    DPDLFYASTHVGYGFYPG+G +++ +GRE RLVNVPFREGEGSS++FRQAW +EIFP L+ F+PELI++SMGFDA  EDPLGEMEL  +D+ W +R   EV R GGR+ GR  GR G       WRE
Sbjct:   30 GKPLPRLCK---------------GVPPCPQARPSFRLPPPEPLPPYPLLVISPPACLKHNIPGHFERPARLTAILHALH---PPSRLPSLPPPHSPPSLPPSAFLLSDADCPRATHEQLARFHTTQHLAHLASLFAESQTLAATSQVQEPSHLDPS----------SSPHLFP-SYPPASLIDIDGDTTVCPGTEEATLRAAGAACRGVEEVMEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSR---EVRRVGGRKGGREGGREGCEGGVEYWRE 405
The following BLAST results are available for this feature:
BLAST of NO07G03880.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852771.14.700e-10757.60histone deacetylase superfamily protein, partial [... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03880NO07G03880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03880.2NO07G03880.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03880.2.cds1NO07G03880.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03880.2.cds2NO07G03880.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03880.2 ID=NO07G03880.2|Name=NO07G03880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp
ACAACTAGAAGAGCCAGCGGAGCCACGAATGTGAAGCTCCTTGAGCTTCA
TCATCATGAACGCGTTTCTCAAAGCAAAGGGCAGCAACGAGGAGACGGCG
TCGGTAGGCGCGGCGGTTATTGTAACCGTAATTGAGGAGCTTTTGGTAAG
TAACTTGCCGGCCACACGACGTCAGAAGCGTCGTGTGGTTGTGTGTGTGT
GTGTGTGGTGGTGGAGCGCTACGAGGTGAAAGTGCTGCATGACTCAGAAC
CCCTCCATCCCAGAGAGCGTCCGCTATAATTACCATCATCATGCTCAAGA
CCGTTCGTGACCCGCACACGCATGAACCACCACTCTGCACCGCCAGAAAC
ATCGCAACGACGGGTAGCGGGACGGCGTGGCAACAATTGCTGGATTCTCC
CTCCACTGAGTCTTATCTTTTGGCTCTCTCCCTCTGTCTTTTTCCCTTCC
CCCGAGCCTGCCAGTCCTCCATGTTTTATATCCACCTGCCTCGGCGTACC
TCCTCATTCATCACTTCTGACTTGTCTTTTGCCCCCTACTGCCCACTTCA
GGGTCAACCCCTTCCCCAGCTGACTAAGCTTGGCACGACCACCGTCACCA
CCACTCCTCGTGCTTCCGCTTTTCCTCCCCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACCCCCTCCT
CATCCTCTCTCCTCTCGCCTGCCTGGACCATGACATCCCCGGACATTTCG
AACGTCCTGCCCGTGTCATCTCCATCCTGAACGCCCTCAAGCAATACGCG
CCCCCTCTCTCCCTTCCTCCCACCTCTGGCGCTCCCCCCCTCCTTCCTCC
CTCCGCCTTCCTTCTCTCCAATGATGATTCCCCCCTCGCTACGCGCGAGC
AATTGACAAGGTTCCACTCTCTACAGCACATTGAAACTCTCTTCTCCCTG
TTTGCGCGATCCAAAGCCGCTGTGGAAGATGAAGGAGAAGAGGACGGCGA
GGAAGGGGGGAAGAAGGGAGGGAAGGAGGGAGGGAGGGCCAGGCGGGCCA
GTGAACGTGTCGGGCCTAAGAATTACAATGACAATGCCATCTTGGACATA
GATGCGGACACTTTCGTGTGCCCTGGCACGGAGGAAGCGGCCTTGCGCGC
AGCGGGAGCAGCGTGTAGGGGCGTCGATGAAGTCCTTGAGGGGAGGGCCG
AAACGGTTTTCTGTGTTGTTCGTCCCCCCGGCCACCATGCGACACCTGAC
AGGGCCATGGGATTTTGTTTCTTCAACAATGTAGGCGTGGCGGCCATGCA
TGCACGGGCGAAGCACGGGGTGAAACGGGTGGCGATCTTGGATCCAGACG
TGCACCATGGCAACGGCACGCAGGATTTCACCGTCCTCGATCCGGATCTT
TTTTATGCCTCTACGCACGTCGGCTACGGCTTCTACCCCGGTAGCGGGCA
CAAGGAGGAGGAGGAAGGGAGGGAAGGTAGGCTCGTGAATGTACCTTTCA
GGGAAGGGGAGGGGAGCAGCCAGCGCTTTAGGCAGGCGTGGGAGAAGGAG
ATTTTCCCCACGTTGAAGGCGTTTGAGCCGGAGTTGATCTTAATGTCGAT
GGGCTTCGACGCGGCGAGGGAGGACCCGCTGGGGGAGATGGAGCTGGAGG
CGAAGGATTACTGGTGGTTGACACGTGGCGTGATGGAGGTGGCGAGGGAG
GGGGGAAGGAGGGGGAGGGGGAGGGGGAGGGGAGGAAATGTAAGGTGTTG
TCGGTGTTGGAGGGAGGTTACCACCTGGGGGCGCTGGGGCTGTGTGGAGT
AGCCCATGTGAAGGCTTTACTGGGCTTGCCGTTTGACGAGGGAGCGGGGG
AGGAGACGGGGGAGGAGGAGGAGCCGTTGGAGGCGTTGCACTTGTTGCCG
CCAGTGGTGGATAGGGAGGAGGAGGAGCTGCTGGAGCGGATGGCGGGGGT
GTCGTTGGACGGGGGGAAGGAGAGGGGGTGAATGATGAGAGAGAGAAGGA
GACGTGCACGTGGCGCTTGCCAGGATATGAAGAGGAGAAACGAAAGGGAG
GATAGGAAAGGAGGAAGACTAGAGATTGGGAAAGGGGAGACGGAGGAGAT
GACTCCGGAGAGGAAGAGAAAAGGCTAGGAAGATGACCATACGCAGCAAA
GCAGGATTTATGCATGTTTTCATGTACATCCACACATATATATATGTACA
TGAGGCGCAATCCAAGCACGCATAGGTGAAAACGTATAAAAGAAAGATGC
ACTTACGCACCAGCCCAATTAGGAA
back to top

protein sequence of NO07G03880.2

>NO07G03880.2-protein ID=NO07G03880.2-protein|Name=NO07G03880.2|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MLKTVRDPHTHEPPLCTARNIATTGSGTAWQQLLDSPSTESYLLALSLCL
FPFPRACQSSMFYIHLPRRTSSFITSDLSFAPYCPLQGQPLPQLTKLGTT
TVTTTPRASAFPPPPPPPPPPPPPPPPPPPPPPHPLLILSPLACLDHDIP
GHFERPARVISILNALKQYAPPLSLPPTSGAPPLLPPSAFLLSNDDSPLA
TREQLTRFHSLQHIETLFSLFARSKAAVEDEGEEDGEEGGKKGGKEGGRA
RRASERVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLE
GRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAIL
DPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVN
VPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEM
ELEAKDYWWLTRGVMEVAREGGRRGRGRGRGGNVRCCRCWREVTTWGRWG
CVE*
back to top

mRNA from alignment at chr7:1081196..1083642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03880.2 ID=NO07G03880.2|Name=NO07G03880.2|organism=Nannochloropsis oceanica|type=mRNA|length=2447bp|location=Sequence derived from alignment at chr7:1081196..1083642- (Nannochloropsis oceanica)
ACAACTAGAAGAGCCAGCGGAGCCACGAATGTGAAGCTCCTTGAGCTTCA
TCATCATGAACGCGTTTCTCAAAGCAAAGGGCAGCAACGAGGAGACGGCG
TCGGTAGGCGCGGCGGTTATTGTAACCGTAATTGAGGAGCTTTTGGTAAG
TAACTTGCCGGCCACACGACGTCAGAAGCGTCGTGTGGTTGTGTGTGTGT
GTGTGTGGTGGTGGAGCGCTACGAGGTGAAAGTGCTGCATGACTCAGAAC
CCCTCCATCCCAGAGAGCGTCCGCTATAATTACCATCATCATGCTCAAGA
CCGTTCGTGACCCGCACACGCATGAACCACCACTCTGCACCGCCAGAAAC
ATCGCAACGACGGGTAGCGGGACGGCGTGGCAACAATTGCTGGATTCTCC
CTCCACTGAGTCTTATCTTTTGGCTCTCTCCCTCTGTCTTTTTCCCTTCC
CCCGAGCCTGCCAGTCCTCCATGTTTTATATCCACCTGCCTCGGCGTACC
TCCTCATTCATCACTTCTGACTTGTCTTTTGCCCCCTACTGCCCACTTCA
GGGTCAACCCCTTCCCCAGCTGACTAAGCTTGGCACGACCACCGTCACCA
CCACTCCTCGTGCTTCCGCTTTTCCTCCCCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACCCCCTCCT
CATCCTCTCTCCTCTCGCCTGCCTGGACCATGACATCCCCGGACATTTCG
AACGTCCTGCCCGTGTCATCTCCATCCTGAACGCCCTCAAGCAATACGCG
CCCCCTCTCTCCCTTCCTCCCACCTCTGGCGCTCCCCCCCTCCTTCCTCC
CTCCGCCTTCCTTCTCTCCAATGATGATTCCCCCCTCGCTACGCGCGAGC
AATTGACAAGGTTCCACTCTCTACAGCACATTGAAACTCTCTTCTCCCTG
TTTGCGCGATCCAAAGCCGCTGTGGAAGATGAAGGAGAAGAGGACGGCGA
GGAAGGGGGGAAGAAGGGAGGGAAGGAGGGAGGGAGGGCCAGGCGGGCCA
GTGAACGTGTCGGGCCTAAGAATTACAATGACAATGCCATCTTGGACATA
GATGCGGACACTTTCGTGTGCCCTGGCACGGAGGAAGCGGCCTTGCGCGC
AGCGGGAGCAGCGTGTAGGGGCGTCGATGAAGTCCTTGAGGGGAGGGCCG
AAACGGTTTTCTGTGTTGTTCGTCCCCCCGGCCACCATGCGACACCTGAC
AGGGCCATGGGATTTTGTTTCTTCAACAATGTAGGCGTGGCGGCCATGCA
TGCACGGGCGAAGCACGGGGTGAAACGGGTGGCGATCTTGGATCCAGGTA
TAAACAATCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAATGGGATA
GCCACATGTGACCGCGACTACGGATTTACACGTCGCATCATTGACTCTTC
CCTCCTTCCTATTTTTCTTCCTCTCTTCCCTCCCTCCCTCCCTCTCTCCC
TCCCTCCCTCGCTTTCTAGACGTGCACCATGGCAACGGCACGCAGGATTT
CACCGTCCTCGATCCGGATCTTTTTTATGCCTCTACGCACGTCGGCTACG
GCTTCTACCCCGGTAGCGGGCACAAGGAGGAGGAGGAAGGGAGGGAAGGT
AGGCTCGTGAATGTACCTTTCAGGGAAGGGGAGGGGAGCAGCCAGCGCTT
TAGGCAGGCGTGGGAGAAGGAGATTTTCCCCACGTTGAAGGCGTTTGAGC
CGGAGTTGATCTTAATGTCGATGGGCTTCGACGCGGCGAGGGAGGACCCG
CTGGGGGAGATGGAGCTGGAGGCGAAGGATTACTGGTGGTTGACACGTGG
CGTGATGGAGGTGGCGAGGGAGGGGGGAAGGAGGGGGAGGGGGAGGGGGA
GGGGAGGAAATGTAAGGTGTTGTCGGTGTTGGAGGGAGGTTACCACCTGG
GGGCGCTGGGGCTGTGTGGAGTAGCCCATGTGAAGGCTTTACTGGGCTTG
CCGTTTGACGAGGGAGCGGGGGAGGAGACGGGGGAGGAGGAGGAGCCGTT
GGAGGCGTTGCACTTGTTGCCGCCAGTGGTGGATAGGGAGGAGGAGGAGC
TGCTGGAGCGGATGGCGGGGGTGTCGTTGGACGGGGGGAAGGAGAGGGGG
TGAATGATGAGAGAGAGAAGGAGACGTGCACGTGGCGCTTGCCAGGATAT
GAAGAGGAGAAACGAAAGGGAGGATAGGAAAGGAGGAAGACTAGAGATTG
GGAAAGGGGAGACGGAGGAGATGACTCCGGAGAGGAAGAGAAAAGGCTAG
GAAGATGACCATACGCAGCAAAGCAGGATTTATGCATGTTTTCATGTACA
TCCACACATATATATATGTACATGAGGCGCAATCCAAGCACGCATAGGTG
AAAACGTATAAAAGAAAGATGCACTTACGCACCAGCCCAATTAGGAA
back to top

Coding sequence (CDS) from alignment at chr7:1081196..1083642-

>NO07G03880.2 ID=NO07G03880.2|Name=NO07G03880.2|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at chr7:1081196..1083642- (Nannochloropsis oceanica)
ATGCTCAAGACCGTTCGTGACCCGCACACGCATGAACCACCACTCTGCAC
CGCCAGAAACATCGCAACGACGGGTAGCGGGACGGCGTGGCAACAATTGC
TGGATTCTCCCTCCACTGAGTCTTATCTTTTGGCTCTCTCCCTCTGTCTT
TTTCCCTTCCCCCGAGCCTGCCAGTCCTCCATGTTTTATATCCACCTGCC
TCGGCGTACCTCCTCATTCATCACTTCTGACTTGTCTTTTGCCCCCTACT
GCCCACTTCAGGGTCAACCCCTTCCCCAGCTGACTAAGCTTGGCACGACC
ACCGTCACCACCACTCCTCGTGCTTCCGCTTTTCCTCCCCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
ACCCCCTCCTCATCCTCTCTCCTCTCGCCTGCCTGGACCATGACATCCCC
GGACATTTCGAACGTCCTGCCCGTGTCATCTCCATCCTGAACGCCCTCAA
GCAATACGCGCCCCCTCTCTCCCTTCCTCCCACCTCTGGCGCTCCCCCCC
TCCTTCCTCCCTCCGCCTTCCTTCTCTCCAATGATGATTCCCCCCTCGCT
ACGCGCGAGCAATTGACAAGGTTCCACTCTCTACAGCACATTGAAACTCT
CTTCTCCCTGTTTGCGCGATCCAAAGCCGCTGTGGAAGATGAAGGAGAAG
AGGACGGCGAGGAAGGGGGGAAGAAGGGAGGGAAGGAGGGAGGGAGGGCC
AGGCGGGCCAGTGAACGTGTCGGGCCTAAGAATTACAATGACAATGCCAT
CTTGGACATAGATGCGGACACTTTCGTGTGCCCTGGCACGGAGGAAGCGG
CCTTGCGCGCAGCGGGAGCAGCGTGTAGGGGCGTCGATGAAGTCCTTGAG
GGGAGGGCCGAAACGGTTTTCTGTGTTGTTCGTCCCCCCGGCCACCATGC
GACACCTGACAGGGCCATGGGATTTTGTTTCTTCAACAATGTAGGCGTGG
CGGCCATGCATGCACGGGCGAAGCACGGGGTGAAACGGGTGGCGATCTTG
GATCCAGACGTGCACCATGGCAACGGCACGCAGGATTTCACCGTCCTCGA
TCCGGATCTTTTTTATGCCTCTACGCACGTCGGCTACGGCTTCTACCCCG
GTAGCGGGCACAAGGAGGAGGAGGAAGGGAGGGAAGGTAGGCTCGTGAAT
GTACCTTTCAGGGAAGGGGAGGGGAGCAGCCAGCGCTTTAGGCAGGCGTG
GGAGAAGGAGATTTTCCCCACGTTGAAGGCGTTTGAGCCGGAGTTGATCT
TAATGTCGATGGGCTTCGACGCGGCGAGGGAGGACCCGCTGGGGGAGATG
GAGCTGGAGGCGAAGGATTACTGGTGGTTGACACGTGGCGTGATGGAGGT
GGCGAGGGAGGGGGGAAGGAGGGGGAGGGGGAGGGGGAGGGGAGGAAATG
TAAGGTGTTGTCGGTGTTGGAGGGAGGTTACCACCTGGGGGCGCTGGGGC
TGTGTGGAGTAG
back to top
Synonyms
Publications