NO07G03870, NO07G03870 (gene) Nannochloropsis oceanica

Overview
NameNO07G03870
Unique NameNO07G03870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length512
Alignment locationchr7:1080481..1080992 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1080481..1080992 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0090266regulation of mitotic cell cycle spindle assembly checkpoint
Vocabulary: Cellular Component
TermDefinition
GO:0005680anaphase-promoting complex
Vocabulary: INTERPRO
TermDefinition
IPR026182ANAPC15
Homology
The following BLAST results are available for this feature:
BLAST of NO07G03870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000460NSK000460Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03870.1NO07G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03870.1NO07G03870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03870 ID=NO07G03870|Name=NO07G03870|organism=Nannochloropsis oceanica|type=gene|length=512bp
ATGAACGCCATCCCCTTTCCCTTTCCACTTTTGGAGCCCCGCGACACCGA
GGAGGgtaagtgttatagcgtggtagatccctctaactcgcccctcaaag
tctcgtcgtgcgtaagtttgcctcatgtcaccgagtttgtaggcggaaaa
taacgcggtccagcattcatctctttcccctcccttccctcgtttccctc
ccccgtcgatatgaagCCTGGTTCCCGAGGTTGGAGCACGGAGAGCTGGA
AATGCTTGCGCACATGGAACGACAGCTGGAGGATAAGCTGGTTGAAATTC
AGACCATTGTTGCTCCCACGCCCATAGGGGTGGTGACCAGGCGGGAGGAG
GAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGA
AGAGGAGGAGATGGAGGAGATGGAGGAGGCCACGGTGGAGGGAGAAGATG
ATGCAGGGACGGAGTTTGAGGTGGATGAAGGATTGGGTCTGTCTGAAAGC
GATGGGGAGTAG
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protein sequence of NO07G03870.1

>NO07G03870.1-protein ID=NO07G03870.1-protein|Name=NO07G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MNAIPFPFPLLEPRDTEEAWFPRLEHGELEMLAHMERQLEDKLVEIQTIV
APTPIGVVTRREEEEEEEEEEEEEEEEEEEEEEMEEMEEATVEGEDDAGT
EFEVDEGLGLSESDGE*
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Synonyms
Publications