NO07G03870.1, NO07G03870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03870.1
Unique NameNO07G03870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length351
Alignment locationchr7:1080481..1080992 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1080481..1080992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO07G03870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03870NO07G03870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03870.1NO07G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03870.1.cds1NO07G03870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03870.1.cds2NO07G03870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03870.1 ID=NO07G03870.1|Name=NO07G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=351bp
ATGAACGCCATCCCCTTTCCCTTTCCACTTTTGGAGCCCCGCGACACCGA
GGAGGCCTGGTTCCCGAGGTTGGAGCACGGAGAGCTGGAAATGCTTGCGC
ACATGGAACGACAGCTGGAGGATAAGCTGGTTGAAATTCAGACCATTGTT
GCTCCCACGCCCATAGGGGTGGTGACCAGGCGGGAGGAGGAGGAGGAGGA
GGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGA
TGGAGGAGATGGAGGAGGCCACGGTGGAGGGAGAAGATGATGCAGGGACG
GAGTTTGAGGTGGATGAAGGATTGGGTCTGTCTGAAAGCGATGGGGAGTA
G
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protein sequence of NO07G03870.1

>NO07G03870.1-protein ID=NO07G03870.1-protein|Name=NO07G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MNAIPFPFPLLEPRDTEEAWFPRLEHGELEMLAHMERQLEDKLVEIQTIV
APTPIGVVTRREEEEEEEEEEEEEEEEEEEEEEMEEMEEATVEGEDDAGT
EFEVDEGLGLSESDGE*
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mRNA from alignment at chr7:1080481..1080992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03870.1 ID=NO07G03870.1|Name=NO07G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=512bp|location=Sequence derived from alignment at chr7:1080481..1080992+ (Nannochloropsis oceanica)
ATGAACGCCATCCCCTTTCCCTTTCCACTTTTGGAGCCCCGCGACACCGA
GGAGGGTAAGTGTTATAGCGTGGTAGATCCCTCTAACTCGCCCCTCAAAG
TCTCGTCGTGCGTAAGTTTGCCTCATGTCACCGAGTTTGTAGGCGGAAAA
TAACGCGGTCCAGCATTCATCTCTTTCCCCTCCCTTCCCTCGTTTCCCTC
CCCCGTCGATATGAAGCCTGGTTCCCGAGGTTGGAGCACGGAGAGCTGGA
AATGCTTGCGCACATGGAACGACAGCTGGAGGATAAGCTGGTTGAAATTC
AGACCATTGTTGCTCCCACGCCCATAGGGGTGGTGACCAGGCGGGAGGAG
GAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGA
AGAGGAGGAGATGGAGGAGATGGAGGAGGCCACGGTGGAGGGAGAAGATG
ATGCAGGGACGGAGTTTGAGGTGGATGAAGGATTGGGTCTGTCTGAAAGC
GATGGGGAGTAG
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Coding sequence (CDS) from alignment at chr7:1080481..1080992+

>NO07G03870.1 ID=NO07G03870.1|Name=NO07G03870.1|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at chr7:1080481..1080992+ (Nannochloropsis oceanica)
ATGAACGCCATCCCCTTTCCCTTTCCACTTTTGGAGCCCCGCGACACCGA
GGAGGCCTGGTTCCCGAGGTTGGAGCACGGAGAGCTGGAAATGCTTGCGC
ACATGGAACGACAGCTGGAGGATAAGCTGGTTGAAATTCAGACCATTGTT
GCTCCCACGCCCATAGGGGTGGTGACCAGGCGGGAGGAGGAGGAGGAGGA
GGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGA
TGGAGGAGATGGAGGAGGCCACGGTGGAGGGAGAAGATGATGCAGGGACG
GAGTTTGAGGTGGATGAAGGATTGGGTCTGTCTGAAAGCGATGGGGAGTA
G
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Synonyms
Publications