NO07G03530, NO07G03530 (gene) Nannochloropsis oceanica

Overview
NameNO07G03530
Unique NameNO07G03530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length543
Alignment locationchr7:972286..972828 -

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Properties
Property NameValue
DescriptionNadh dehydrogenase iron-sulfur protein mitochondrial
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:972286..972828 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019401Znf_CHCC
Homology
BLAST of NO07G03530 vs. NCBI_GenBank
Match: EWM27017.1 (nadh dehydrogenase iron-sulfur protein mitochondrial precursor [Nannochloropsis gaditana])

HSP 1 Score: 164.1 bits (414), Expect = 4.100e-37
Identity = 87/122 (71.31%), Postives = 97/122 (79.51%), Query Frame = 0
Query:   64 MLRTTLTRQLATVGTVLRVRTATVNVAPAVVV----RALSFSPPSS--SNPSKSPYTHGAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGEEISECKYCGLRYKMSHH 180
            MLR ++TRQLATV T  RV+      APA++     R  S  P SS  SNPS SPYTHGAHRS+AEELVAQFPVTEVHGTVALCDGGGG MGHPIEYIQLNTVGEE++ CKYCGL+YKM+HH
Sbjct:    1 MLRNSITRQLATVKTAFRVQRRV--HAPAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120          
BLAST of NO07G03530 vs. NCBI_GenBank
Match: XP_009841219.1 (hypothetical protein H257_14968 [Aphanomyces astaci] >ETV69362.1 hypothetical protein H257_14968 [Aphanomyces astaci])

HSP 1 Score: 99.4 bits (246), Expect = 1.200e-17
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 0
Query:  110 KSPYTH-GAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGEEISECKYCGLRYKMSHHH 181
            K+P+     HRSDAE  +AQ PV EV   VA+CDGGGGA+GHP+EYI LN V ++   CKYCGLRYK  HHH
Sbjct:   45 KTPFEDTNRHRSDAELRIAQVPVVEVDSDVAVCDGGGGALGHPVEYIALNIVSDKPQTCKYCGLRYKQKHHH 116          
BLAST of NO07G03530 vs. NCBI_GenBank
Match: XP_008874596.1 (hypothetical protein H310_10110 [Aphanomyces invadans] >ETV96819.1 hypothetical protein H310_10110 [Aphanomyces invadans])

HSP 1 Score: 96.7 bits (239), Expect = 8.000e-17
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 0
Query:   83 RTATVNVAPAVVVRALSFSPPSSSNPSKSPYTH-GAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGEEISECKYCGLRYKMSHHH 181
            R A   +AP         +  ++    K+P+     HRSDAE L+AQ PV EV   VA+CDGGGGA+GHP+EYI LNTV ++   CKYCGLRYK   HH
Sbjct:   17 RAAVKAMAPRAFAAVQQAAGYATIYDLKTPFEDTNRHRSDAEILIAQVPVVEVDSDVAVCDGGGGALGHPLEYIALNTVSDKPQTCKYCGLRYKQKPHH 115          
BLAST of NO07G03530 vs. NCBI_GenBank
Match: OQS06219.1 (hypothetical protein THRCLA_20420 [Thraustotheca clavata])

HSP 1 Score: 96.3 bits (238), Expect = 1.000e-16
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 0
Query:  118 HRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGEEISECKYCGLRYKMSHHH 181
            H SDAE  +AQ PV EV G  A+CDGGGGA+GHP+EYI L+ V +E   CKYCGLR+K SHHH
Sbjct:   49 HHSDAEIRIAQVPVIEVDGDTAVCDGGGGALGHPLEYIALDIVSKEPQVCKYCGLRFKKSHHH 111          
BLAST of NO07G03530 vs. NCBI_GenBank
Match: CBJ32168.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.4 bits (233), Expect = 4.000e-16
Identity = 50/105 (47.62%), Postives = 63/105 (60.00%), Query Frame = 0
Query:   77 GTVLRVRTATVNVAPAVVVRALSFSPPS--SSNPSKSPYTHGAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGEEISECKYCGLRYKMSHH 180
            G V  VR A++ +  A        +P +  S   SKS Y HGAHRSDAE  +A+ PV  V G VALCDGGGGA+GHP++YIQL +       C+YCG  Y+M  H
Sbjct:   23 GAVAAVRPASIGLTTAASRPFSQLAPTTTFSKERSKSVYEHGAHRSDAEARIAKVPVVMVDGPVALCDGGGGALGHPLDYIQLGSPDGGPRACQYCGTLYQMKTH 127          
BLAST of NO07G03530 vs. NCBI_GenBank
Match: XP_008609687.1 (hypothetical protein SDRG_05734 [Saprolegnia diclina VS20] >EQC36906.1 hypothetical protein SDRG_05734 [Saprolegnia diclina VS20])

HSP 1 Score: 92.8 bits (229), Expect = 1.200e-15
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   79 VLRVRTATVN-VAPAVVVRALSF----SPPSSSNPSKSPYTH-GAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGEEISECKYCGLRYKMSHHH 181
            VLRV  A +  VA    VR+L+F    +  S+    ++P+     H SDAE  +AQ PV EV G  A+CDGGGGA+GHP+EYI L+ V  E   CKYCGLR+K  HHH
Sbjct:    7 VLRVLRAPMRFVAAPKAVRSLAFRSQVARMSTIYKGQTPFEDINRHHSDAEIRIAQVPVIEVDGDTAVCDGGGGALGHPLEYIALDIVSHEPQACKYCGLRFKKHHHH 114          
BLAST of NO07G03530 vs. NCBI_GenBank
Match: GAX97793.1 (Hypothetical protein PINS_005636, partial [Pythium insidiosum])

HSP 1 Score: 92.8 bits (229), Expect = 1.200e-15
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 0
Query:  109 SKSPYTH-GAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTV-GEEISECKYCGLRYKM-----SHHH 181
            +K PY     HRSDAE+ +AQ P+ +V G VA+CDGGGGA+GHP+EYIQL+TV   E   CKYCG+RY+       HHH
Sbjct:   51 NKMPYEDVNRHRSDAEQRIAQVPIVDVEGDVAVCDGGGGALGHPLEYIQLDTVRHNEPQTCKYCGIRYRKKPGYHGHHH 129          
BLAST of NO07G03530 vs. NCBI_GenBank
Match: XP_012196609.1 (hypothetical protein SPRG_02655 [Saprolegnia parasitica CBS 223.65] >KDO32963.1 hypothetical protein SPRG_02655 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 92.0 bits (227), Expect = 2.000e-15
Identity = 53/108 (49.07%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   79 VLRVRTATV-NVAPAVVVRALSF----SPPSSSNPSKSPYTH-GAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGEEISECKYCGLRYKMSHHH 181
            VLRV  A + +VA    VR+L F    +  S+    ++P+     H SDAE  +AQ PV EV G  A+CDGGGGA+GHP+EYI L+ V  E   CKYCGLR+K  HHH
Sbjct:    7 VLRVLRAPMRSVAAPKAVRSLVFRSQVARMSTIYKGQTPFEDINRHHSDAEIRIAQVPVIEVDGDTAVCDGGGGALGHPLEYIALDIVSHEPQACKYCGLRFKKHHHH 114          
BLAST of NO07G03530 vs. NCBI_GenBank
Match: CCA27988.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 90.9 bits (224), Expect = 4.400e-15
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 0
Query:   99 SFSPPSSSNPSKSPYTHGAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGE-EISECKYCGLRYKM 177
            SF+    + P      H  HRSDAE  +AQ PV EV G +A+CDGGGGA+GHP+EYIQL+TV   E   CKYCG+RYKM
Sbjct:   38 SFATIYDAKPRPDDTVH--HRSDAEIRIAQVPVVEVEGNLAVCDGGGGALGHPLEYIQLDTVERYEPQTCKYCGIRYKM 114          
BLAST of NO07G03530 vs. NCBI_GenBank
Match: OQR99373.1 (hypothetical protein ACHHYP_06948 [Achlya hypogyna])

HSP 1 Score: 88.6 bits (218), Expect = 2.200e-14
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   79 VLRVRTATVNVAPA-VVVRALSF----SPPSSSNPSKSPYTH-GAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGEEISECKYCGLRYKMSHHH 181
            VLRV  A +  A A   +R++ F    +  S+    ++P+     H SDAE  +AQ PV EV    A+CDGGGGA+GHP+EYI L+ V +E   CKYCGLR+K +HHH
Sbjct:    7 VLRVLRAPLRHAAAPKAIRSVVFRTQVANMSNIYKGQTPFEDINRHHSDAEIRIAQVPVIEVDSDTAVCDGGGGALGHPLEYIALDIVSQEPQACKYCGLRFKKAHHH 114          
The following BLAST results are available for this feature:
BLAST of NO07G03530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27017.14.100e-3771.31nadh dehydrogenase iron-sulfur protein mitochondri... [more]
XP_009841219.11.200e-1761.11hypothetical protein H257_14968 [Aphanomyces astac... [more]
XP_008874596.18.000e-1749.49hypothetical protein H310_10110 [Aphanomyces invad... [more]
OQS06219.11.000e-1665.08hypothetical protein THRCLA_20420 [Thraustotheca c... [more]
CBJ32168.14.000e-1647.62conserved unknown protein [Ectocarpus siliculosus][more]
XP_008609687.11.200e-1549.07hypothetical protein SDRG_05734 [Saprolegnia dicli... [more]
GAX97793.11.200e-1555.70Hypothetical protein PINS_005636, partial [Pythium... [more]
XP_012196609.12.000e-1549.07hypothetical protein SPRG_02655 [Saprolegnia paras... [more]
CCA27988.14.400e-1556.96conserved hypothetical protein [Albugo laibachii N... [more]
OQR99373.12.200e-1446.30hypothetical protein ACHHYP_06948 [Achlya hypogyna... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000498NSK000498Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03530.1NO07G03530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581190gene_2690Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100444g3gene3531Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03530.1NO07G03530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03530 ID=NO07G03530|Name=NO07G03530|organism=Nannochloropsis oceanica|type=gene|length=543bp
ATGGTGCCCTTCCCACCGGGTCCTGGACGCACACTCCCTCGGCATGACCA
CCTGCCCCACGTGTACTACCAGGGGGACGAAGACTTGGTGGAGGTGAGCT
GGTCTTCTCAGCACTTACTGTGGATTCCACCTACACCTCTCACTCTTACC
CTCCCACCGCAACCCACAATCACAGCGTTACGTCCAATTATGCTGCGTAC
CACCCTTACCCGGCAGCTAGCCACCGTGGGGACCGTACTTCGAGTCCGTA
CAGCCACTGTCAACGTCGCCCCTGCCGTCGTCGTGCGTGCCCTCTCCTTT
TCCCCTCCCTCGTCCTCCAACCCAAGCAAGTCGCCCTACACTCACGGTGC
CCACCGGAGCGATGCCGAGGAGCTTGTAGCTCAATTTCCCGTGACAGAGG
TGCATGGGACAGTTGCATTGTGTGATGGTGGGGGGGGGGCGATGGGGCAC
CCCATTGAATACATTCAGCTCAACACTGTGGGGGAGGAGATATCGGAATG
CAAGTATTGTGGGCTTCGGTACAAGATGTCGCACCATCATTAG
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protein sequence of NO07G03530.1

>NO07G03530.1-protein ID=NO07G03530.1-protein|Name=NO07G03530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MVPFPPGPGRTLPRHDHLPHVYYQGDEDLVEVSWSSQHLLWIPPTPLTLT
LPPQPTITALRPIMLRTTLTRQLATVGTVLRVRTATVNVAPAVVVRALSF
SPPSSSNPSKSPYTHGAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGH
PIEYIQLNTVGEEISECKYCGLRYKMSHHH*
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Synonyms
Publications