NO07G03530.1, NO07G03530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03530.1
Unique NameNO07G03530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length543
Alignment locationchr7:972286..972828 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:972286..972828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03530.1 vs.
Match: EWM27017.1 (nadh dehydrogenase iron-sulfur protein mitochondrial precursor [Nannochloropsis gaditana])

HSP 1 Score: 164.1 bits (414), Expect = 4.100e-37
Identity = 87/122 (71.31%), Postives = 97/122 (79.51%), Query Frame = 0 
Query:   64 MLRTTLTRQLATVGTVLRVRTATVNVAPAVVV----RALSFSPPSS--SNPSKSPYTHGAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGHPIEYIQLNTVGEEISECKYCGLRYKMSHH 180
            MLR ++TRQLATV T  RV+      APA++     R  S  P SS  SNPS SPYTHGAHRS+AEELVAQFPVTEVHGTVALCDGGGG MGHPIEYIQLNTVGEE++ CKYCGL+YKM+HH
Sbjct:    1 MLRNSITRQLATVKTAFRVQRRVH--APAIMSAPSRRCFSVPPSSSPPSNPSNSPYTHGAHRSNAEELVAQFPVTEVHGTVALCDGGGGGMGHPIEYIQLNTVGEEVATCKYCGLQYKMAHH 120
The following BLAST results are available for this feature:
BLAST of NO07G03530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27017.14.100e-3771.31nadh dehydrogenase iron-sulfur protein mitochondri... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03530NO07G03530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03530.1NO07G03530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03530.1.cds1NO07G03530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03530.1 ID=NO07G03530.1|Name=NO07G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=543bp
ATGGTGCCCTTCCCACCGGGTCCTGGACGCACACTCCCTCGGCATGACCA
CCTGCCCCACGTGTACTACCAGGGGGACGAAGACTTGGTGGAGGTGAGCT
GGTCTTCTCAGCACTTACTGTGGATTCCACCTACACCTCTCACTCTTACC
CTCCCACCGCAACCCACAATCACAGCGTTACGTCCAATTATGCTGCGTAC
CACCCTTACCCGGCAGCTAGCCACCGTGGGGACCGTACTTCGAGTCCGTA
CAGCCACTGTCAACGTCGCCCCTGCCGTCGTCGTGCGTGCCCTCTCCTTT
TCCCCTCCCTCGTCCTCCAACCCAAGCAAGTCGCCCTACACTCACGGTGC
CCACCGGAGCGATGCCGAGGAGCTTGTAGCTCAATTTCCCGTGACAGAGG
TGCATGGGACAGTTGCATTGTGTGATGGTGGGGGGGGGGCGATGGGGCAC
CCCATTGAATACATTCAGCTCAACACTGTGGGGGAGGAGATATCGGAATG
CAAGTATTGTGGGCTTCGGTACAAGATGTCGCACCATCATTAG
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protein sequence of NO07G03530.1

>NO07G03530.1-protein ID=NO07G03530.1-protein|Name=NO07G03530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MVPFPPGPGRTLPRHDHLPHVYYQGDEDLVEVSWSSQHLLWIPPTPLTLT
LPPQPTITALRPIMLRTTLTRQLATVGTVLRVRTATVNVAPAVVVRALSF
SPPSSSNPSKSPYTHGAHRSDAEELVAQFPVTEVHGTVALCDGGGGAMGH
PIEYIQLNTVGEEISECKYCGLRYKMSHHH*
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mRNA from alignment at chr7:972286..972828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03530.1 ID=NO07G03530.1|Name=NO07G03530.1|organism=Nannochloropsis oceanica|type=mRNA|length=543bp|location=Sequence derived from alignment at chr7:972286..972828- (Nannochloropsis oceanica)
ATGGTGCCCTTCCCACCGGGTCCTGGACGCACACTCCCTCGGCATGACCA
CCTGCCCCACGTGTACTACCAGGGGGACGAAGACTTGGTGGAGGTGAGCT
GGTCTTCTCAGCACTTACTGTGGATTCCACCTACACCTCTCACTCTTACC
CTCCCACCGCAACCCACAATCACAGCGTTACGTCCAATTATGCTGCGTAC
CACCCTTACCCGGCAGCTAGCCACCGTGGGGACCGTACTTCGAGTCCGTA
CAGCCACTGTCAACGTCGCCCCTGCCGTCGTCGTGCGTGCCCTCTCCTTT
TCCCCTCCCTCGTCCTCCAACCCAAGCAAGTCGCCCTACACTCACGGTGC
CCACCGGAGCGATGCCGAGGAGCTTGTAGCTCAATTTCCCGTGACAGAGG
TGCATGGGACAGTTGCATTGTGTGATGGTGGGGGGGGGGCGATGGGGCAC
CCCATTGAATACATTCAGCTCAACACTGTGGGGGAGGAGATATCGGAATG
CAAGTATTGTGGGCTTCGGTACAAGATGTCGCACCATCATTAG
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Coding sequence (CDS) from alignment at chr7:972286..972828-

>NO07G03530.1 ID=NO07G03530.1|Name=NO07G03530.1|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at chr7:972286..972828- (Nannochloropsis oceanica)
ATGGTGCCCTTCCCACCGGGTCCTGGACGCACACTCCCTCGGCATGACCA
CCTGCCCCACGTGTACTACCAGGGGGACGAAGACTTGGTGGAGGTGAGCT
GGTCTTCTCAGCACTTACTGTGGATTCCACCTACACCTCTCACTCTTACC
CTCCCACCGCAACCCACAATCACAGCGTTACGTCCAATTATGCTGCGTAC
CACCCTTACCCGGCAGCTAGCCACCGTGGGGACCGTACTTCGAGTCCGTA
CAGCCACTGTCAACGTCGCCCCTGCCGTCGTCGTGCGTGCCCTCTCCTTT
TCCCCTCCCTCGTCCTCCAACCCAAGCAAGTCGCCCTACACTCACGGTGC
CCACCGGAGCGATGCCGAGGAGCTTGTAGCTCAATTTCCCGTGACAGAGG
TGCATGGGACAGTTGCATTGTGTGATGGTGGGGGGGGGGCGATGGGGCAC
CCCATTGAATACATTCAGCTCAACACTGTGGGGGAGGAGATATCGGAATG
CAAGTATTGTGGGCTTCGGTACAAGATGTCGCACCATCATTAG
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Synonyms
Publications