NO07G03290, NO07G03290 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_062305964.1 (rRNA pseudouridine synthase [Alicyclobacillus sendaiensis]) HSP 1 Score: 137.9 bits (346), Expect = 6.700e-29 Identity = 93/250 (37.20%), Postives = 138/250 (55.20%), Query Frame = 0 Query: 117 MFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIR-PLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGE 366 M RL ++LA+ GV SR + L+R G+V++ V + PS + V+ PI P+++ NKP+ ST+ DP+GR + L P +++ PVGRLD DT+GLLLF+ DG+LTQRLLHPS +++ Y +V G D+ + R L +GVE D GV+ K E++ + DGE+ G+ V+ + + EG++R VRR+ G PVV L R+ +G V LG L GE Sbjct: 1 MERLQKVLAHAGVASRRKCEELIRAGRVSVDGQTVTELGAKVDPSRQRIAVDGVPIELEQPVVLVLNKPVAYLSTVSDPLGRRTVMQLLPPMRERVY-PVGRLDYDTSGLLLFTNDGELTQRLLHPSREIEKVYRVSV------RGIVDR----EARRALMEGVELED--------GVTAPAKVEVL--RQADGED------GVAVVHLAIHEGRNRQVRRMFERLGLPVVRLKRIAFGPVSLGHLKTGE 223
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_035002211.1 (rRNA pseudouridine synthase [Corynebacterium jeikeium]) HSP 1 Score: 136.7 bits (343), Expect = 1.500e-28 Identity = 99/278 (35.61%), Postives = 146/278 (52.52%), Query Frame = 0 Query: 101 ENKKRPATNQPKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHL-PSTALLFVNQEPIRPLPLLVAY--NKPLGVHSTMGDPMGRPNLEDTLHPRLAK---LFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDA 373 E + A NQP + RL ++LA+ GV SR L+ G+V + NGEV+ + PS ++ V+ E ++ +V + NKP GVHSTM D +GRP + D + RL + LFH VGRLDA T GLLL + DG+L RL+HP V++ Y+ATV LG+ KL LK GVE DGT A+ + + + +G ++++ + EG+ +VRR+L AG+PV L R + V+LG+ G I ++ A Sbjct: 33 EQEAAAALNQPDSEKAQVRLQKVLASAGVASRRMSEKLIAAGRVEV-NGEVVVKMGTRIDPSVDIVRVDGERVQVNEEMVYFVLNKPRGVHSTMSDELGRPCVGDLVGTRLKEGQGLFH-VGRLDAATEGLLLLTNDGELANRLMHPKYEVRKTYMATV-LGEASR---------KLIRDLKDGVELDDGTARADSVQIVDV-------------------WQGKSLIKIELHEGRKHIVRRMLKEAGFPVQALVRTKIHTVQLGEQKPGTIRALNQA 279
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_042212325.1 (rRNA pseudouridine synthase [Lysinimicrobium mangrovi] >SEI81158.1 23S rRNA pseudouridine2605 synthase [Lysinimicrobium mangrovi]) HSP 1 Score: 136.7 bits (343), Expect = 1.500e-28 Identity = 94/257 (36.58%), Postives = 137/257 (53.31%), Query Frame = 0 Query: 116 EMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHL-PSTALLFVNQEPIRPLP--LLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEI 370 E RL ++LA+ GVGSR + L+ RG+V + +GEV+ + P ++ V+ E I L V NKP GV STM DP GRP L+ + +LFH VGRLDA+TTGLLL + DG+L RL HP+ V + Y+A V +G K + LK+G+E DG A V + K +++V + EG++R+VRR+L G+PV+ L R ++G + LG +A GE+ E+ Sbjct: 10 EGVRLQKVLASAGVGSRRKCEELIERGRVTV-DGEVVDQLGVRVDPEAVVIAVDGERISVAAGHLTVVLNKPFGVVSTMSDPQGRPALDQFVSQYQERLFH-VGRLDAETTGLLLLTNDGELANRLAHPTHGVSKVYVAKV----KGRVSK------HVTTQLKEGIELDDGPVRATACTVLDVAKDS-------------------SLVQVELHEGRNRIVRRMLDKVGHPVLELVRTQFGPLRLGTMAPGEVREL 235
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_034974260.1 (MULTISPECIES: rRNA pseudouridine synthase [Corynebacterium] >OFM59498.1 MFS transporter [Corynebacterium sp. HMSC058E07]) HSP 1 Score: 136.3 bits (342), Expect = 2.000e-28 Identity = 98/278 (35.25%), Postives = 146/278 (52.52%), Query Frame = 0 Query: 101 ENKKRPATNQPKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHL-PSTALLFVNQEPIRPLPLLVAY--NKPLGVHSTMGDPMGRPNLEDTLHPRLAK---LFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDA 373 E + A NQP + RL ++LA+ GV SR L+ G+V + NGE++ + PS ++ V+ E ++ +V + NKP GVHSTM D +GRP + D + RL + LFH VGRLDA T GLLL + DG+L RL+HP V++ Y+ATV LG+ KL LK GVE DGT A+ + + + +G ++++ + EG+ +VRR+L AG+PV L R + V+LG+ G I ++ A Sbjct: 33 EQEAAAALNQPDSEKAQVRLQKVLASAGVASRRMSEKLIAAGRVEV-NGEIVVKMGTRIDPSVDIVRVDGERVQVNEEMVYFVLNKPRGVHSTMSDELGRPCVGDLVGTRLKEGQGLFH-VGRLDAATEGLLLLTNDGELANRLMHPKYEVRKTYMATV-LGEASR---------KLIRDLKDGVELDDGTARADSVQIVDV-------------------WQGKSLIKIELHEGRKHIVRRMLKEAGFPVQALVRTKIHTVQLGEQKPGTIRALNQA 279
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_048543741.1 (rRNA pseudouridine synthase [Tetrasphaera jenkinsii]) HSP 1 Score: 136.3 bits (342), Expect = 2.000e-28 Identity = 92/268 (34.33%), Postives = 143/268 (53.36%), Query Frame = 0 Query: 105 RPATNQPKQKVEM-----FRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIR--PLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGE 366 RP +P + V++ RL +LLA GVGSR + L+ G+V + NG+++ + +P A++ V+ E ++ P + +A+NKPLGV +TM D +GR N+ D + R +LFH VGRLDADT GLLL + DG+L RL HP+ + + Y+A V G +D L + L++GVE DG + + +++ G ++ V + EG+ +VRR+L G+PV L R + G V LGD G+ Sbjct: 41 RPPVERPGEAVDVHDPNGIRLQKLLAASGVGSRRKCEELIAEGRVEV-NGQIVLELGIRVPPGAIIHVDGERVQTDPERVYLAFNKPLGVVTTMNDELGRVNVGDYVAQRRERLFH-VGRLDADTEGLLLLTNDGELANRLQHPAYGILKTYVAQV----PGPIPRD------LGKQLREGVELDDGVVRVDSFKLVDSL-------------------PGKAIVEVVLHEGRKHIVRRMLEAVGHPVQALARTQVGPVRLGDTKPGK 277
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_009680700.1 (pseudouridine synthase [Gordonia neofelifaecis] >EGD53762.1 pseudouridine synthase [Gordonia neofelifaecis NRRL B-59395]) HSP 1 Score: 136.0 bits (341), Expect = 2.600e-28 Identity = 98/259 (37.84%), Postives = 135/259 (52.12%), Query Frame = 0 Query: 119 RLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHL-PSTALLFVN--QEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRL---AKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDD 372 RL ++LA GV SR L+ G+V + +GEV+ + + P TA++ V+ + I +A NKP G HSTM D GRP + D + R+ +LFH VGRLDADT GLLL + DG+L RL+HPS V + YLATV G+ G L L+QGVE DG + + E +G ++R+ + EG+ R+VRRLLA G+PVVGL R G V LG G + +D+ Sbjct: 123 RLQKVLAAAGVASRRGAEELIAAGRVEV-DGEVVVEQGLRIDPDTAIIKVDGARVVIDESKQYLALNKPKGWHSTMSDDQGRPCIGDIIAERVMAGQRLFH-VGRLDADTEGLLLLTNDGELAHRLMHPSYEVPKTYLATVR-GEVNRG---------LGRELRQGVELEDGPVAVDSFALLEV-------------------NQGKSLVRLTLHEGRKRVVRRLLAEVGFPVVGLVRTDIGPVTLGKQRPGSLRVLDN 350
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_034967688.1 (rRNA pseudouridine synthase [Corynebacterium jeikeium]) HSP 1 Score: 136.0 bits (341), Expect = 2.600e-28 Identity = 98/278 (35.25%), Postives = 146/278 (52.52%), Query Frame = 0 Query: 101 ENKKRPATNQPKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHL-PSTALLFVNQEPIRPLPLLVAY--NKPLGVHSTMGDPMGRPNLEDTLHPRLAK---LFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDA 373 E + A NQP + RL ++LA+ GV SR L+ G+V + NGE++ + PS ++ V+ E ++ +V + NKP GVHSTM D +GRP + D + RL + LFH VGRLDA T GLLL + DG+L RL+HP V++ Y+ATV LG+ KL LK GVE DGT A+ + + + +G ++++ + EG+ +VRR+L AG+PV L R + V+LG+ G I ++ A Sbjct: 33 EQEAAAALNQPDSEKAKVRLQKVLASAGVASRRMSEKLIAAGRVEV-NGEIVVKMGTRIDPSVDIVRVDGERVQVNEEMVYFVLNKPRGVHSTMSDELGRPCVGDLVGTRLKEGQGLFH-VGRLDAATEGLLLLTNDGELANRLMHPKYEVRKTYMATV-LGEASR---------KLIRDLKDGVELDDGTARADSVQIVDV-------------------WQGKSLIKIELHEGRKHIVRRMLKEAGFPVQALVRTKIHTVQLGEQKPGTIRALNQA 279
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_076049452.1 (rRNA pseudouridine synthase [Mycobacterium heraklionense] >OMC08327.1 pseudouridine synthase [Mycobacterium heraklionense]) HSP 1 Score: 136.0 bits (341), Expect = 2.600e-28 Identity = 96/262 (36.64%), Postives = 143/262 (54.58%), Query Frame = 0 Query: 111 PKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHL-PSTALLFVN--QEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRL---AKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEI 367 P ++ + RL ++L+ GV SR ++R G+V + +G+V+ + + P+TA++ V+ + + + +A NKP GVHSTM D GRP + D + R+ AKLFH VGRLDADT GL+L + DG+L RL+HPS V + Y+ATV +G G L + L++GVE DG + V +A+ G ++RV + EG+ R+VRR+LA G+PV L R G VELG+ G I Sbjct: 4 PGEEQDGVRLQKVLSQAGVASRRVAERMIRDGRVEV-DGQVVTELGTRVDPATAVIRVDGARVTVDDTRVYLALNKPRGVHSTMSDDRGRPCIGDYVEHRVRGDAKLFH-VGRLDADTEGLMLLTNDGELAHRLMHPSYQVPKTYIATV-IGTVPRG---------LGKKLREGVELDDGPAKVDDFAVVDAV-------------------PGKSMVRVTLHEGRKRIVRRMLAAVGFPVQELVRTDIGSVELGEQRPGSI 234
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_014464425.1 (rRNA pseudouridine synthase [Alicyclobacillus acidocaldarius] >AEJ43558.1 pseudouridine synthase [Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1]) HSP 1 Score: 134.8 bits (338), Expect = 5.700e-28 Identity = 92/252 (36.51%), Postives = 142/252 (56.35%), Query Frame = 0 Query: 117 MFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHL-PSTALLFVNQEPIR-PLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADG-TYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGE 366 M RL ++LA+ GV SR + L+ G+V++ +GEV+ + PS + V+ PI P+++ NKP+ ST+ DP+GR + + L P + + +PVGRLD DT+GLLLF+ DG+LTQRLLHPS +++ Y +V G D+ + R L +GVE DG T PA + + +A DGE+ G+ V+ + + EG++R VRR+ G PV+ L R+ +G + LG L G+ Sbjct: 1 MERLQKVLAHAGVASRRKCEELILAGRVSV-DGEVVTQLGAKVDPSRQRIAVDGVPIELEQPVVLVLNKPVAYLSTVSDPLGRRTVMELL-PPIRERVYPVGRLDYDTSGLLLFTNDGELTQRLLHPSREIEKVYRVSV------RGIVDR----ETRRALMEGVELEDGVTAPARVEVLRQA-----------DGED------GVAVVHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPISLGHLKTGQ 223
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_017837673.1 (rRNA pseudouridine synthase [Dietzia sp. UCD-THP] >EYT61779.1 pseudouridine synthase [Dietzia sp. UCD-THP]) HSP 1 Score: 134.8 bits (338), Expect = 5.700e-28 Identity = 95/252 (37.70%), Postives = 138/252 (54.76%), Query Frame = 0 Query: 119 RLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHL-PSTALLFVNQEPIRPLPLLV--AYNKPLGVHSTMGDPMGRPNLEDTLHPRL---AKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEG 365 RL ++LA G+ SR L+ RG+V + NG+++++ + P+TA++ V+ I LV A NKP G H+TM D MGRP + D + R+ +LFH VGRLDADT GLLL + DG+L RL+HPS V + Y+ATV G G+G + +TL++GVE DG + V + +G +++V + EG+ +VRRLL+ G+PV L R R+G V LGD G Sbjct: 13 RLQKILAQAGIASRRASEDLIARGRVEV-NGKIVREMGVKVDPATAVIRVDGTRIVLDDNLVYLALNKPRGYHTTMSDDMGRPCVGDLVADRVDAGQRLFH-VGRLDADTEGLLLVTNDGELAHRLMHPSYEVSKTYMATV-TGVVGKG---------VGKTLREGVELEDGPAKVDQFSVLDV-------------------HEGRSLVKVVLHEGRKHIVRRLLSEVGHPVESLVRTRFGAVALGDQRAG 233 The following BLAST results are available for this feature:
BLAST of NO07G03290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G03290 ID=NO07G03290|Name=NO07G03290|organism=Nannochloropsis oceanica|type=gene|length=1567bpback to top protein sequence of NO07G03290.1 >NO07G03290.1-protein ID=NO07G03290.1-protein|Name=NO07G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bpback to top Synonyms
Publications
|