NO07G03290.1, NO07G03290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03290.1
Unique NameNO07G03290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr7:908252..909818 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:908252..909818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03290.1 vs.
Match: EWM27039.1 (ribosomal large subunit pseudouridine synthase b [Nannochloropsis gaditana])

HSP 1 Score: 348.2 bits (892), Expect = 3.300e-92
Identity = 223/408 (54.66%), Postives = 272/408 (66.67%), Query Frame = 0 
Query:    1 MRSG-AQQQQGLLVIYVLL--GAMMLASTMALSL--IGTVARR--------SHIALTSALFLPPCSSSIFYHPTRHGHQPSQGIRTRSTSSSGSSSSRSGSSRRHACEKDGSDENKKRPATNQPKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVEL-----GDEGEGGKDKFD-EAKLRETLKQGVETADGTYPAELLGVSEAIK-----KEIVEKEEEDGEEGGE-KTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMM 384
            M++G  QQ +G  V+  LL    +++A+  A S   IG  + R        + +  TS LF P  S  + +  T   +Q   G    + S +G  S+  GS  + +     S + KK+      K+K EMFRLDRLLANRGVG+RTEVT LVRRGKVAL N +V+KDP FH+PS A+L V+  P++PLPLLV Y+KP GVHSTMGDPMGRPNLED L PRLAK FHPVGRLDADTTGLLLFS DGQLTQRLLHPS NVQREYLATV++     G+E E  + + D EA LR  L  GV+TADG Y A+LL V    K      E+   EE+ G EG +   +  LVLRVGVSEGKHRMVRRLLANAGYPVV LHRVRYG + LG L+EGE+ EI+  S+ GQWARR++
Sbjct:   17 MKTGWRQQHKGKQVVLALLLFKMVIMAANSARSCMKIGFASTRLPFWRAVCTKVHGTSFLF-PSRSRVLRFSSTEDSNQ---GRPPYAASDTGDEST--GSESKISIISKASSKKKKKGG----KEKAEMFRLDRLLANRGVGTRTEVTALVRRGKVALDNKKVVKDPSFHIPSDAVLLVDHVPVQPLPLLVVYHKPFGVHSTMGDPMGRPNLEDVLPPRLAKTFHPVGRLDADTTGLLLFSGDGQLTQRLLHPSSNVQREYLATVDIDVGVNGNEEEKKRKEADFEAALRAKLAAGVKTADGIYEAQLLEVMRRKKIEERDDEVNSIEEDKGAEGRKSNAREELVLRVGVSEGKHRMVRRLLANAGYPVVALHRVRYGHISLGTLSEGEVTEIEAQSEGGQWARRLL 414
The following BLAST results are available for this feature:
BLAST of NO07G03290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27039.13.300e-9254.66ribosomal large subunit pseudouridine synthase b [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03290NO07G03290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03290.1NO07G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03290.1.cds1NO07G03290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03290.1.cds2NO07G03290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03290.1.cds3NO07G03290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03290.1 ID=NO07G03290.1|Name=NO07G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGAGAAGCGGAGCGCAGCAGCAGCAAGGCCTCCTCGTTATTTACGTGCT
CCTTGGGGCGATGATGCTGGCATCAACCATGGCACTTTCATTGATTGGTA
CAGTCGCAAGAAGATCACACATAGCATTGACATCCGCCCTCTTCTTGCCT
CCCTGTTCCTCCTCCATCTTCTACCACCCCACACGCCATGGCCACCAGCC
TTCACAAGGCATCCGCACACGCAGCACCAGCAGTAGCGGTAGCAGTAGCA
GCAGAAGTGGTAGCAGCAGACGTCATGCCTGTGAGAAAGATGGCAGTGAC
GAGAACAAGAAGAGGCCTGCCACCAATCAGCCGAAGCAGAAGGTTGAAAT
GTTTCGTCTTGACCGACTTCTGGCCAACCGAGGGGTAGGCAGTCGGACGG
AGGTCACGGTGTTGGTGCGTCGGGGAAAAGTGGCATTACAGAATGGGGAG
GTGATCAAAGACCCCAAGTTTCACCTTCCCTCCACCGCCCTTCTTTTTGT
CAACCAAGAGCCCATCCGCCCCCTCCCCCTCCTCGTCGCTTATAACAAGC
CTCTGGGCGTGCACTCCACAATGGGTGATCCTATGGGTCGCCCGAATCTT
GAAGATACATTACATCCTCGTCTAGCCAAATTGTTTCATCCTGTCGGCAG
GCTTGACGCTGACACCACGGGCTTGCTTTTATTTTCAATCGATGGACAAC
TAACCCAGCGACTGTTACACCCCTCGGGAAACGTGCAGAGAGAATATCTG
GCAACTGTCGAGTTGGGGGATGAGGGGGAGGGAGGGAAGGACAAGTTTGA
CGAAGCAAAGCTGAGGGAGACGTTGAAGCAGGGAGTGGAAACAGCGGATG
GCACATACCCTGCCGAATTGTTAGGGGTGTCGGAAGCGATTAAAAAAGAG
ATAGTTGAAAAAGAGGAGGAGGATGGGGAGGAAGGAGGGGAGAAGACAAA
AGGTCTACTTGTACTGCGTGTTGGCGTGTCGGAAGGGAAGCATCGGATGG
TTCGTCGATTGCTTGCAAATGCGGGCTACCCTGTCGTAGGCTTGCATCGA
GTAAGGTACGGTAGGGTAGAGTTGGGAGATTTGGCCGAGGGCGAAATCGT
GGAGATAGATGATGCAAGTGACGTTGGACAGTGGGCTAGGCGGATGATGG
AAGGGAAACATTAG
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protein sequence of NO07G03290.1

>NO07G03290.1-protein ID=NO07G03290.1-protein|Name=NO07G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MRSGAQQQQGLLVIYVLLGAMMLASTMALSLIGTVARRSHIALTSALFLP
PCSSSIFYHPTRHGHQPSQGIRTRSTSSSGSSSSRSGSSRRHACEKDGSD
ENKKRPATNQPKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGE
VIKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNL
EDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYL
ATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKE
IVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHR
VRYGRVELGDLAEGEIVEIDDASDVGQWARRMMEGKH*
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mRNA from alignment at chr7:908252..909818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03290.1 ID=NO07G03290.1|Name=NO07G03290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1567bp|location=Sequence derived from alignment at chr7:908252..909818+ (Nannochloropsis oceanica)
ATGAGAAGCGGAGCGCAGCAGCAGCAAGGCCTCCTCGTTATTTACGTGCT
CCTTGGGGCGATGATGCTGGCATCAACCATGGTGCGTAATTCTTCTAGGG
ATTGGAGGTAGTATAGTGCCGCACGTCTGTGGGGCTTATTTGGGCCGAAG
ACTGATCTTGCTCGGGGCTCCTATCCCCGTTGATCTCCTTTCTCGTTCGC
TCAACCCTCCCCACCCCTCTCACCTTCCCTCCTCTATTCAACCCCTTCCT
GCAGGCACTTTCATTGATTGGTACAGTCGCAAGAAGATCACACATAGCAT
TGACATCCGCCCTCTTCTTGCCTCCCTGTTCCTCCTCCATCTTCTACCAC
CCCACACGCCATGGCCACCAGCCTTCACAAGGCATCCGCACACGCAGCAC
CAGCAGTAGCGGTAGCAGTAGCAGCAGAAGTGGTAGCAGCAGACGTCATG
CCTGTGAGAAAGATGGCAGTGACGAGAACAAGAAGAGGCCTGCCACCAAT
CAGCCGAAGCAGAAGGTTGAAATGTTTCGTCTTGACCGACTTCTGGCCAA
CCGAGGGGTAGGCAGTCGGACGGAGGTCACGGTGTTGGTGCGTCGGGGAA
AAGTGGCATTACAGAATGGGGAGGTGATCAAGTACGTTGAGGAACGCTGA
TTGATGTGGAAAGAGTGAGAGGAGAAGCGAATTCGCATGCGCAGACGAAG
AGACTGTCCTCCTTCTCATTTAACCCCCTCTCTGCAGTAGTCAGTAGAAC
ACCTCTTCAGTTCCAATAGACGCTACAGATATCAACTTACTTTGTCCACT
CTTTCACTGCCATACTGCATCATAATTACCTCCCCGTCTTCCATCCCTCA
TTCCCTCCCAGAGACCCCAAGTTTCACCTTCCCTCCACCGCCCTTCTTTT
TGTCAACCAAGAGCCCATCCGCCCCCTCCCCCTCCTCGTCGCTTATAACA
AGCCTCTGGGCGTGCACTCCACAATGGGTGATCCTATGGGTCGCCCGAAT
CTTGAAGATACATTACATCCTCGTCTAGCCAAATTGTTTCATCCTGTCGG
CAGGCTTGACGCTGACACCACGGGCTTGCTTTTATTTTCAATCGATGGAC
AACTAACCCAGCGACTGTTACACCCCTCGGGAAACGTGCAGAGAGAATAT
CTGGCAACTGTCGAGTTGGGGGATGAGGGGGAGGGAGGGAAGGACAAGTT
TGACGAAGCAAAGCTGAGGGAGACGTTGAAGCAGGGAGTGGAAACAGCGG
ATGGCACATACCCTGCCGAATTGTTAGGGGTGTCGGAAGCGATTAAAAAA
GAGATAGTTGAAAAAGAGGAGGAGGATGGGGAGGAAGGAGGGGAGAAGAC
AAAAGGTCTACTTGTACTGCGTGTTGGCGTGTCGGAAGGGAAGCATCGGA
TGGTTCGTCGATTGCTTGCAAATGCGGGCTACCCTGTCGTAGGCTTGCAT
CGAGTAAGGTACGGTAGGGTAGAGTTGGGAGATTTGGCCGAGGGCGAAAT
CGTGGAGATAGATGATGCAAGTGACGTTGGACAGTGGGCTAGGCGGATGA
TGGAAGGGAAACATTAG
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Coding sequence (CDS) from alignment at chr7:908252..909818+

>NO07G03290.1 ID=NO07G03290.1|Name=NO07G03290.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr7:908252..909818+ (Nannochloropsis oceanica)
ATGAGAAGCGGAGCGCAGCAGCAGCAAGGCCTCCTCGTTATTTACGTGCT
CCTTGGGGCGATGATGCTGGCATCAACCATGGCACTTTCATTGATTGGTA
CAGTCGCAAGAAGATCACACATAGCATTGACATCCGCCCTCTTCTTGCCT
CCCTGTTCCTCCTCCATCTTCTACCACCCCACACGCCATGGCCACCAGCC
TTCACAAGGCATCCGCACACGCAGCACCAGCAGTAGCGGTAGCAGTAGCA
GCAGAAGTGGTAGCAGCAGACGTCATGCCTGTGAGAAAGATGGCAGTGAC
GAGAACAAGAAGAGGCCTGCCACCAATCAGCCGAAGCAGAAGGTTGAAAT
GTTTCGTCTTGACCGACTTCTGGCCAACCGAGGGGTAGGCAGTCGGACGG
AGGTCACGGTGTTGGTGCGTCGGGGAAAAGTGGCATTACAGAATGGGGAG
GTGATCAAAGACCCCAAGTTTCACCTTCCCTCCACCGCCCTTCTTTTTGT
CAACCAAGAGCCCATCCGCCCCCTCCCCCTCCTCGTCGCTTATAACAAGC
CTCTGGGCGTGCACTCCACAATGGGTGATCCTATGGGTCGCCCGAATCTT
GAAGATACATTACATCCTCGTCTAGCCAAATTGTTTCATCCTGTCGGCAG
GCTTGACGCTGACACCACGGGCTTGCTTTTATTTTCAATCGATGGACAAC
TAACCCAGCGACTGTTACACCCCTCGGGAAACGTGCAGAGAGAATATCTG
GCAACTGTCGAGTTGGGGGATGAGGGGGAGGGAGGGAAGGACAAGTTTGA
CGAAGCAAAGCTGAGGGAGACGTTGAAGCAGGGAGTGGAAACAGCGGATG
GCACATACCCTGCCGAATTGTTAGGGGTGTCGGAAGCGATTAAAAAAGAG
ATAGTTGAAAAAGAGGAGGAGGATGGGGAGGAAGGAGGGGAGAAGACAAA
AGGTCTACTTGTACTGCGTGTTGGCGTGTCGGAAGGGAAGCATCGGATGG
TTCGTCGATTGCTTGCAAATGCGGGCTACCCTGTCGTAGGCTTGCATCGA
GTAAGGTACGGTAGGGTAGAGTTGGGAGATTTGGCCGAGGGCGAAATCGT
GGAGATAGATGATGCAAGTGACGTTGGACAGTGGGCTAGGCGGATGATGG
AAGGGAAACATTAG
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Synonyms
Publications