NO07G03290, NO07G03290 (gene) Nannochloropsis oceanica

Overview
NameNO07G03290
Unique NameNO07G03290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1567
Alignment locationchr7:908252..909818 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal large subunit pseudouridine synthase b
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:908252..909818 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016866intramolecular transferase activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR000748PsdUridine_synth_RsuA/RluB/E/F
IPR006145PsdUridine_synth_RsuA/RluD
IPR002942S4_RNA-bd
Homology
BLAST of NO07G03290 vs. NCBI_GenBank
Match: EWM27039.1 (ribosomal large subunit pseudouridine synthase b [Nannochloropsis gaditana])

HSP 1 Score: 352.4 bits (903), Expect = 1.700e-93
Identity = 188/284 (66.20%), Postives = 213/284 (75.00%), Query Frame = 0
Query:  112 KQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFD------EAKLRETLKQGVETADGTYPAELLGVSEAIK-----KEIVEKEEEDGEEGGE-KTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMM 384
            K+K EMFRLDRLLANRGVG+RTEVT LVRRGKVAL N +V+KDP FH+PS A+L V+  P++PLPLLV Y+KP GVHSTMGDPMGRPNLED L PRLAK FHPVGRLDADTTGLLLFS DGQLTQRLLHPS NVQREYLATV++                  EA LR  L  GV+TADG Y A+LL V    K      E+   EE+ G EG +   +  LVLRVGVSEGKHRMVRRLLANAGYPVV LHRVRYG + LG L+EGE+ EI+  S+ GQWARR++
Sbjct:  131 KEKAEMFRLDRLLANRGVGTRTEVTALVRRGKVALDNKKVVKDPSFHIPSDAVLLVDHVPVQPLPLLVVYHKPFGVHSTMGDPMGRPNLEDVLPPRLAKTFHPVGRLDADTTGLLLFSGDGQLTQRLLHPSSNVQREYLATVDIXXXXXXXXXXXXXXEADFEAALRAKLAAGVKTADGIYEAQLLEVMRRKKIEERDDEVNSIEEDKGAEGRKSNAREELVLRVGVSEGKHRMVRRLLANAGYPVVALHRVRYGHISLGTLSEGEVTEIEAQSEGGQWARRLL 414          
BLAST of NO07G03290 vs. NCBI_GenBank
Match: XP_005852618.1 (pseudouridine synthase [Nannochloropsis gaditana CCMP526] >EKU23213.1 pseudouridine synthase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 320.5 bits (820), Expect = 7.300e-84
Identity = 178/284 (62.68%), Postives = 200/284 (70.42%), Query Frame = 0
Query:  112 KQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFD------EAKLRETLKQGVETADGTYPAELLGVSEAIK-----KEIVEKEEEDGEEGGE-KTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMM 384
            K+K EMFRLDRLLANRGVG+RTEVT LVRRGKVAL N +V+KDP FH+PS A+L V+               P GVHSTMGDPMGRPNLED L PRLAK FHPVGRLDADTTGLLLFS DGQLTQRLLHPS NVQREYLA V++                  EA LR  L  GV+TADG Y A+LL V    K      E+   EE+ G EG +   +  LVLRVGVSEGKHRMVRRLLANAGYPVV LHRVRYG + LG L+EGE+ EI+  S+ GQWARR++
Sbjct:  131 KEKAEMFRLDRLLANRGVGTRTEVTALVRRGKVALDNKKVVKDPSFHIPSDAVLLVDH--------------PFGVHSTMGDPMGRPNLEDVLPPRLAKTFHPVGRLDADTTGLLLFSGDGQLTQRLLHPSSNVQREYLAMVDIXXXXXXXXXXXXXXEADFEAALRAKLAAGVKTADGIYEAQLLEVMRRKKIEERDDEVNSIEEDKGAEGRKSNAREELVLRVGVSEGKHRMVRRLLANAGYPVVALHRVRYGHISLGTLSEGEVTEIEAQSEGGQWARRLL 400          
BLAST of NO07G03290 vs. NCBI_GenBank
Match: CBN77595.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 207.2 bits (526), Expect = 9.000e-50
Identity = 123/266 (46.24%), Postives = 165/266 (62.03%), Query Frame = 0
Query:  119 RLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMME 385
            RL +LLA+R +G+R+EV  LVRRG+V + +G V+K PK  LP   ++ VN E   P+PLLVA++KP GV +T+ D   R +L D L   L    HPVGRLDAD++GLLL S DG LT RLL+P   V+REY+A+V++  EGE   D      L   LK+G+ TADG Y A++  +S              G + G          V V EGK+RMVRR+LANAGYPV+ L R RYG++ LGDL EGE V +  + D  +WAR +++
Sbjct:  137 RLSKLLADRAIGTRSEVDTLVRRGRVKV-DGAVVKSPKTKLPVDCVIEVNGEVHGPVPLLVAFHKPKGVITTLSDDWDREDLSDVLPKSLLLKHHPVGRLDADSSGLLLLSSDGALTHRLLNPRFEVEREYVASVDVPPEGEEPGD-----SLVTALKEGITTADGVYKADVPAIS--------------GRDVG----------VVVREGKNRMVRRMLANAGYPVLELRRERYGKILLGDLPEGEHVPV--SGDALEWARSVLQ 370          
BLAST of NO07G03290 vs. NCBI_GenBank
Match: XP_002286079.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95720.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 178.7 bits (452), Expect = 3.400e-41
Identity = 121/309 (39.16%), Postives = 177/309 (57.28%), Query Frame = 0
Query:  103 KKRPATNQPKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVAL--------QNGEVIKDPKFHLPSTALLFVNQEPI-RPLPLLVAYNKPLGVHSTMGD-----PMGRPNLEDTLHPRLAKL-FHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELL------GVSEAIKKEIVEKEEEDGEEGGEKTKG------LLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMME 385
            K R A  + ++K  + R+D++LA+RGVG+R++   L +  ++          +    IK P   +PS A LF++   +  P PLL+ Y+KP  V S M D        R +L   L PR A+   HPVGRLD DTTGL+LFS DG+LTQRLLHP   V++EY+ATV+          + + ++LRE L  GVET DGT+ A L+      G SE  ++++    EED  EGG++T           +R+ VSEGK+RMVRR+LAN+G+PVV L R R+G + L DL  G+  ++    +  +WA  + +
Sbjct:   75 KARTAKLKGRKKAALQRIDKVLADRGVGTRSQTFDLAKAKRITWSTSPDATHEERTRIKGPSEKVPSNASLFLDGNLLPAPTPLLLVYHKPKFVLSVMEDDKKYQDQQRKHLGHILEPRYARSGMHPVGRLDYDTTGLILFSSDGKLTQRLLHPRRGVEKEYVATVQ---------GEVNASELREMLANGVETTDGTFAANLIAVTSSNGPSEVSEEDLNNVPEED--EGGDETTDEPYNGPYSDVRLVVSEGKYRMVRRILANSGHPVVELRRERHGEILLDDLPVGKFRDV--TPEELEWAEALKQ 370          
BLAST of NO07G03290 vs. NCBI_GenBank
Match: EJK43763.1 (hypothetical protein THAOC_37761 [Thalassiosira oceanica])

HSP 1 Score: 172.9 bits (437), Expect = 1.900e-39
Identity = 114/290 (39.31%), Postives = 166/290 (57.24%), Query Frame = 0
Query:  117 MFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGE--------VIKDPKFHLPSTALLFVNQEPI-RPLPLLVAYNKPLGVHSTMGDPM-----GRPNLEDTLHPRLAK-LFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKE--------EEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMM 384
            + R+D+LLA+RGVG+R+    L +  +V   + +         I  PK  +P  A LF++ + +   LPLL+AY+KP  V S M D +      R +L   L PR  K   HPVGRLD +TTGLLLFS DG+LTQ+LLHP   V++EY+ATVE            DE +L +TL +GVET +G + AEL+ V+++      E +        ++D ++  E       +R+ V EGKHRMVRR+LAN GYPVV L R+R+G + L +L  GE      +++  +WA  ++
Sbjct:   88 LVRIDKLLAHRGVGTRSATFELAKARRVCWADSDDSTHEERTRIAGPKEKVPLGASLFLDGKLLPGALPLLIAYHKPKFVLSVMRDDIRWKDQARRHLGQVLEPRFLKGGIHPVGRLDYETTGLLLFSTDGKLTQQLLHPRRGVEKEYIATVE---------GAVDEGELSQTLAEGVETTEGIHTAELVKVTQSADGPSSEVDPSRSDASPQDDEKDDDEYCGPYSDVRLVVKEGKHRMVRRILANCGYPVVELKRLRHGEIRLRELPPGEFRNC--SNEEIEWAESLL 366          
BLAST of NO07G03290 vs. NCBI_GenBank
Match: XP_005766703.1 (hypothetical protein EMIHUDRAFT_45202, partial [Emiliania huxleyi CCMP1516] >XP_005776398.1 hypothetical protein EMIHUDRAFT_56428, partial [Emiliania huxleyi CCMP1516] >EOD14274.1 hypothetical protein EMIHUDRAFT_45202, partial [Emiliania huxleyi CCMP1516] >EOD23969.1 hypothetical protein EMIHUDRAFT_56428, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 162.5 bits (410), Expect = 2.600e-36
Identity = 109/239 (45.61%), Postives = 132/239 (55.23%), Query Frame = 0
Query:  119 RLDRLLANRGVGSRTEVTVLVRRGKVALQNGEV-------IKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHR 351
            RLD+LLA+RG GSR +V  L+R+G V L+N E            K  +P  A   V+     P PLL AY+KPLGV S+M D  GRP+L   L     K  HPVGRLDADTTGLLLF  DG LT RLLHP   V+REY+ATVE            DE  LR  L  GVET +   P  + G       E++  E       G++      +R    EGK+RMVRR+LAN G+PVV LHR
Sbjct:    5 RLDKLLADRGAGSRKDVDRLIRKGLVELENPETGSYEVVGKSGGKLKVPWDACPLVDGFDYPPPPLLAAYHKPLGVVSSMKDDKGRPDLASVLPQPWQKALHPVGRLDADTTGLLLFCRDGDLTHRLLHPKYVVEREYVATVE---------GAVDEELLRGRLAAGVETVEEGEPFVVQG-------ELLSVE-------GQR------VRCVFREGKYRMVRRVLANCGHPVVALHR 214          
BLAST of NO07G03290 vs. NCBI_GenBank
Match: GAX15679.1 (23S rRNA pseudouridine2605 synthase [Fistulifera solaris])

HSP 1 Score: 162.2 bits (409), Expect = 3.300e-36
Identity = 109/292 (37.33%), Postives = 162/292 (55.48%), Query Frame = 0
Query:  118 FRLDRLLANRGVGSRTEVTVLVRRGKVALQ-----NGEVIKDPKFHLPSTALLFVNQEPIRPL--PLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGV----SEAIKKEIVEKE--------EEDGEEGGE----KTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMMEGK 387
            FR DR+LANR   SR++   L++  +V  +     N +V+K P   +P  A LF+++    PL  PL   Y KP  + S   DPM RP +       +    HPVGRLD DT+GLLLFS  G LTQ+LLHP   +++EY+A V             D  +LR+ L+ GVET++G + A LL V    S+ ++  + + +        + D +E G     +   L  +R+ V EGK+RMVRR+LAN G+ VV L R R G ++LGDL EG++ ++   +D   WA ++++GK
Sbjct:   35 FRADRVLANRTGQSRSQCFQLLKDKRVWQKLDDEGNFQVVKGPAEQIPMQASLFIDRAHEIPLPPPLAQVYCKPKWMLSVRSDPMQRPCI-----AHICPNLHPVGRLDYDTSGLLLFSSSGTLTQQLLHPKHEIEKEYVAVV---------TGAVDAERLRQQLQDGVETSEGVHTAVLLDVQHWDSDTVRPYLQQVQAAVPSHYNQTDLQEKGHWRIFEANELSTVRLTVQEGKYRMVRRILANCGHEVVDLRRERLGMIQLGDLPEGKVRDL--TADELAWAEQVLQGK 310          
BLAST of NO07G03290 vs. NCBI_GenBank
Match: GAX13583.1 (23S rRNA pseudouridine2605 synthase [Fistulifera solaris])

HSP 1 Score: 159.5 bits (402), Expect = 2.200e-35
Identity = 107/292 (36.64%), Postives = 162/292 (55.48%), Query Frame = 0
Query:  118 FRLDRLLANRGVGSRTEVTVLVRRGKVALQ-----NGEVIKDPKFHLPSTALLFVNQEPIRPL--PLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGV----SEAIKKEIVEKE--------EEDGEEGGE----KTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMMEGK 387
            FR DR+LANR   SR++   L++  +V  +     N +V+K P   +P  A LF+++    PL  PL   Y KP  + S   DP+ RP +       +    HPVGRLD DT+GLLLFS  G LTQ+LLHP   +++EY+A V             D  +LR+ L+ GV T++G + A LL V    ++ ++  + + +        + D +E G     +   L  +R+ V EGK+RMVRR+LAN G+ VV L R R GR++LGDL EG++ ++   +D   WA ++++GK
Sbjct:   37 FRADRVLANRTGQSRSQCFQLLKEKRVWQKLDDEGNFQVVKGPAEQIPMQASLFIDRTHEIPLPPPLAQVYCKPKWMLSVRSDPLQRPCI-----AHICPNLHPVGRLDYDTSGLLLFSSAGTLTQQLLHPKHEIEKEYVAVV---------TGVVDTERLRQQLQDGVATSEGVHTAVLLDVQHWDTDTVRPYLEQVQGAVPSHYNQTDLQEKGHWRIFEANELSTVRLTVQEGKYRMVRRILANCGHEVVDLRRERLGRIQLGDLPEGKVRDL--TADELAWAEQVLQGK 312          
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_067848014.1 (rRNA pseudouridine synthase [Alicyclobacillus mali])

HSP 1 Score: 139.0 bits (349), Expect = 3.000e-29
Identity = 94/251 (37.45%), Postives = 140/251 (55.78%), Query Frame = 0
Query:  117 MFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIR-PLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADG-TYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGE 366
            M RL ++LA+ GV SR +   L+  G+V++    V +      PS   + V+  PI    P+++A NKP+   ST+ DPMGR  +   L P + +  +PVGRLD DT+GLLLF+ DG+LTQRLLHPS  +++ Y A+V       G  D+    ++R  L +GVE  DG T PA         K E+V + + +         G+ V+ + + EG++R VRR+L   G PV+ L R+ +G + LG L  GE
Sbjct:    1 MERLQKVLAHAGVASRRKCEELILAGRVSVDGETVTQLGAKVDPSRQRIAVDGVPIEMEQPVVLALNKPVAYLSTVSDPMGRRTVMQLL-PPIRERVYPVGRLDYDTSGLLLFTNDGELTQRLLHPSREIEKVYRASV------RGIVDR----EIRRALVEGVELEDGLTAPA---------KVEVVRQSDRE--------DGVAVVHLAIHEGRNRQVRRMLERLGLPVLRLKRIAFGPISLGHLKTGE 223          
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_070768099.1 (rRNA pseudouridine synthase [Corynebacterium sp. HMSC04H06] >OFS23258.1 hypothetical protein HMPREF3067_02200 [Corynebacterium sp. HMSC04H06])

HSP 1 Score: 138.7 bits (348), Expect = 3.900e-29
Identity = 100/268 (37.31%), Postives = 139/268 (51.87%), Query Frame = 0
Query:  111 PKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIRPLPLLVAY---NKPLGVHSTMGDPMGRPNLEDTLHPRLA---KLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDA 373
            P Q+ E  RL ++LA  GV SR    VL+ +G+V + NG+ I                          + Y   NKP GVHSTM D MGRP + D +  R+A   +LFH VGRLDADT GLLL + DG+L  RL+HP   V++ YLATV     GEG K      KL   LK+G+E  DG   A+ + V                    +K +G  ++R+ + EG+  +VRR+L  AGYPV  L R +   V+LG+L  G++  ++D+
Sbjct:   66 PAQQGE--RLQKVLAKAGVASRRHAEVLIEKGRVEV-NGKKITRQGVRXXXXXXXXXXXXXXXXXXXDMEYFVLNKPRGVHSTMSDEMGRPCVGDLISERVAAGQRLFH-VGRLDADTEGLLLLTNDGELANRLMHPKYEVRKTYLATV----LGEGDK------KLVRALKEGIELDDGVAKADFVQVV-------------------DKNQGYSLIRLELHEGRKHIVRRMLKAAGYPVQRLVRTKIHTVQLGELKPGKMRALNDS 300          
The following BLAST results are available for this feature:
BLAST of NO07G03290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27039.11.700e-9366.20ribosomal large subunit pseudouridine synthase b [... [more]
XP_005852618.17.300e-8462.68pseudouridine synthase [Nannochloropsis gaditana C... [more]
CBN77595.19.000e-5046.24conserved unknown protein [Ectocarpus siliculosus][more]
XP_002286079.13.400e-4139.16predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK43763.11.900e-3939.31hypothetical protein THAOC_37761 [Thalassiosira oc... [more]
XP_005766703.12.600e-3645.61hypothetical protein EMIHUDRAFT_45202, partial [Em... [more]
GAX15679.13.300e-3637.3323S rRNA pseudouridine2605 synthase [Fistulifera s... [more]
GAX13583.12.200e-3536.6423S rRNA pseudouridine2605 synthase [Fistulifera s... [more]
WP_067848014.13.000e-2937.45rRNA pseudouridine synthase [Alicyclobacillus mali... [more]
WP_070768099.13.900e-2937.31rRNA pseudouridine synthase [Corynebacterium sp. H... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000530NSK000530Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03290.1NO07G03290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581108gene_2663Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100056g17gene3506Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03290.1NO07G03290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03290 ID=NO07G03290|Name=NO07G03290|organism=Nannochloropsis oceanica|type=gene|length=1567bp
ATGAGAAGCGGAGCGCAGCAGCAGCAAGGCCTCCTCGTTATTTACGTGCT
CCTTGGGGCGATGATGCTGGCATCAACCATGgtgcgtaattcttctaggg
attggaggtagtatagtgccgcacgtctgtggggcttatttgggccgaag
actgatcttgctcggggctcctatccccgttgatctcctttctcgttcgc
tcaaccctccccacccctctcaccttccctcctctattcaaccccttcct
gcagGCACTTTCATTGATTGGTACAGTCGCAAGAAGATCACACATAGCAT
TGACATCCGCCCTCTTCTTGCCTCCCTGTTCCTCCTCCATCTTCTACCAC
CCCACACGCCATGGCCACCAGCCTTCACAAGGCATCCGCACACGCAGCAC
CAGCAGTAGCGGTAGCAGTAGCAGCAGAAGTGGTAGCAGCAGACGTCATG
CCTGTGAGAAAGATGGCAGTGACGAGAACAAGAAGAGGCCTGCCACCAAT
CAGCCGAAGCAGAAGGTTGAAATGTTTCGTCTTGACCGACTTCTGGCCAA
CCGAGGGGTAGGCAGTCGGACGGAGGTCACGGTGTTGGTGCGTCGGGGAA
AAGTGGCATTACAGAATGGGGAGGTGATCAAgtacgttgaggaacgctga
ttgatgtggaaagagtgagaggagaagcgaattcgcatgcgcagacgaag
agactgtcctccttctcatttaaccccctctctgcagtagtcagtagaac
acctcttcagttccaatagacgctacagatatcaacttactttgtccact
ctttcactgccatactgcatcataattacctccccgtcttccatccctca
ttccctcccagAGACCCCAAGTTTCACCTTCCCTCCACCGCCCTTCTTTT
TGTCAACCAAGAGCCCATCCGCCCCCTCCCCCTCCTCGTCGCTTATAACA
AGCCTCTGGGCGTGCACTCCACAATGGGTGATCCTATGGGTCGCCCGAAT
CTTGAAGATACATTACATCCTCGTCTAGCCAAATTGTTTCATCCTGTCGG
CAGGCTTGACGCTGACACCACGGGCTTGCTTTTATTTTCAATCGATGGAC
AACTAACCCAGCGACTGTTACACCCCTCGGGAAACGTGCAGAGAGAATAT
CTGGCAACTGTCGAGTTGGGGGATGAGGGGGAGGGAGGGAAGGACAAGTT
TGACGAAGCAAAGCTGAGGGAGACGTTGAAGCAGGGAGTGGAAACAGCGG
ATGGCACATACCCTGCCGAATTGTTAGGGGTGTCGGAAGCGATTAAAAAA
GAGATAGTTGAAAAAGAGGAGGAGGATGGGGAGGAAGGAGGGGAGAAGAC
AAAAGGTCTACTTGTACTGCGTGTTGGCGTGTCGGAAGGGAAGCATCGGA
TGGTTCGTCGATTGCTTGCAAATGCGGGCTACCCTGTCGTAGGCTTGCAT
CGAGTAAGGTACGGTAGGGTAGAGTTGGGAGATTTGGCCGAGGGCGAAAT
CGTGGAGATAGATGATGCAAGTGACGTTGGACAGTGGGCTAGGCGGATGA
TGGAAGGGAAACATTAG
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protein sequence of NO07G03290.1

>NO07G03290.1-protein ID=NO07G03290.1-protein|Name=NO07G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MRSGAQQQQGLLVIYVLLGAMMLASTMALSLIGTVARRSHIALTSALFLP
PCSSSIFYHPTRHGHQPSQGIRTRSTSSSGSSSSRSGSSRRHACEKDGSD
ENKKRPATNQPKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGE
VIKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNL
EDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYL
ATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKE
IVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHR
VRYGRVELGDLAEGEIVEIDDASDVGQWARRMMEGKH*
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