NO07G03290, NO07G03290 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G03290 vs. NCBI_GenBank
Match: EWM27039.1 (ribosomal large subunit pseudouridine synthase b [Nannochloropsis gaditana]) HSP 1 Score: 352.4 bits (903), Expect = 1.700e-93 Identity = 188/284 (66.20%), Postives = 213/284 (75.00%), Query Frame = 0 Query: 112 KQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFD------EAKLRETLKQGVETADGTYPAELLGVSEAIK-----KEIVEKEEEDGEEGGE-KTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMM 384 K+K EMFRLDRLLANRGVG+RTEVT LVRRGKVAL N +V+KDP FH+PS A+L V+ P++PLPLLV Y+KP GVHSTMGDPMGRPNLED L PRLAK FHPVGRLDADTTGLLLFS DGQLTQRLLHPS NVQREYLATV++ EA LR L GV+TADG Y A+LL V K E+ EE+ G EG + + LVLRVGVSEGKHRMVRRLLANAGYPVV LHRVRYG + LG L+EGE+ EI+ S+ GQWARR++ Sbjct: 131 KEKAEMFRLDRLLANRGVGTRTEVTALVRRGKVALDNKKVVKDPSFHIPSDAVLLVDHVPVQPLPLLVVYHKPFGVHSTMGDPMGRPNLEDVLPPRLAKTFHPVGRLDADTTGLLLFSGDGQLTQRLLHPSSNVQREYLATVDIXXXXXXXXXXXXXXEADFEAALRAKLAAGVKTADGIYEAQLLEVMRRKKIEERDDEVNSIEEDKGAEGRKSNAREELVLRVGVSEGKHRMVRRLLANAGYPVVALHRVRYGHISLGTLSEGEVTEIEAQSEGGQWARRLL 414
BLAST of NO07G03290 vs. NCBI_GenBank
Match: XP_005852618.1 (pseudouridine synthase [Nannochloropsis gaditana CCMP526] >EKU23213.1 pseudouridine synthase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 320.5 bits (820), Expect = 7.300e-84 Identity = 178/284 (62.68%), Postives = 200/284 (70.42%), Query Frame = 0 Query: 112 KQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFD------EAKLRETLKQGVETADGTYPAELLGVSEAIK-----KEIVEKEEEDGEEGGE-KTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMM 384 K+K EMFRLDRLLANRGVG+RTEVT LVRRGKVAL N +V+KDP FH+PS A+L V+ P GVHSTMGDPMGRPNLED L PRLAK FHPVGRLDADTTGLLLFS DGQLTQRLLHPS NVQREYLA V++ EA LR L GV+TADG Y A+LL V K E+ EE+ G EG + + LVLRVGVSEGKHRMVRRLLANAGYPVV LHRVRYG + LG L+EGE+ EI+ S+ GQWARR++ Sbjct: 131 KEKAEMFRLDRLLANRGVGTRTEVTALVRRGKVALDNKKVVKDPSFHIPSDAVLLVDH--------------PFGVHSTMGDPMGRPNLEDVLPPRLAKTFHPVGRLDADTTGLLLFSGDGQLTQRLLHPSSNVQREYLAMVDIXXXXXXXXXXXXXXEADFEAALRAKLAAGVKTADGIYEAQLLEVMRRKKIEERDDEVNSIEEDKGAEGRKSNAREELVLRVGVSEGKHRMVRRLLANAGYPVVALHRVRYGHISLGTLSEGEVTEIEAQSEGGQWARRLL 400
BLAST of NO07G03290 vs. NCBI_GenBank
Match: CBN77595.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 207.2 bits (526), Expect = 9.000e-50 Identity = 123/266 (46.24%), Postives = 165/266 (62.03%), Query Frame = 0 Query: 119 RLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMME 385 RL +LLA+R +G+R+EV LVRRG+V + +G V+K PK LP ++ VN E P+PLLVA++KP GV +T+ D R +L D L L HPVGRLDAD++GLLL S DG LT RLL+P V+REY+A+V++ EGE D L LK+G+ TADG Y A++ +S G + G V V EGK+RMVRR+LANAGYPV+ L R RYG++ LGDL EGE V + + D +WAR +++ Sbjct: 137 RLSKLLADRAIGTRSEVDTLVRRGRVKV-DGAVVKSPKTKLPVDCVIEVNGEVHGPVPLLVAFHKPKGVITTLSDDWDREDLSDVLPKSLLLKHHPVGRLDADSSGLLLLSSDGALTHRLLNPRFEVEREYVASVDVPPEGEEPGD-----SLVTALKEGITTADGVYKADVPAIS--------------GRDVG----------VVVREGKNRMVRRMLANAGYPVLELRRERYGKILLGDLPEGEHVPV--SGDALEWARSVLQ 370
BLAST of NO07G03290 vs. NCBI_GenBank
Match: XP_002286079.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95720.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 178.7 bits (452), Expect = 3.400e-41 Identity = 121/309 (39.16%), Postives = 177/309 (57.28%), Query Frame = 0 Query: 103 KKRPATNQPKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVAL--------QNGEVIKDPKFHLPSTALLFVNQEPI-RPLPLLVAYNKPLGVHSTMGD-----PMGRPNLEDTLHPRLAKL-FHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELL------GVSEAIKKEIVEKEEEDGEEGGEKTKG------LLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMME 385 K R A + ++K + R+D++LA+RGVG+R++ L + ++ + IK P +PS A LF++ + P PLL+ Y+KP V S M D R +L L PR A+ HPVGRLD DTTGL+LFS DG+LTQRLLHP V++EY+ATV+ + + ++LRE L GVET DGT+ A L+ G SE ++++ EED EGG++T +R+ VSEGK+RMVRR+LAN+G+PVV L R R+G + L DL G+ ++ + +WA + + Sbjct: 75 KARTAKLKGRKKAALQRIDKVLADRGVGTRSQTFDLAKAKRITWSTSPDATHEERTRIKGPSEKVPSNASLFLDGNLLPAPTPLLLVYHKPKFVLSVMEDDKKYQDQQRKHLGHILEPRYARSGMHPVGRLDYDTTGLILFSSDGKLTQRLLHPRRGVEKEYVATVQ---------GEVNASELREMLANGVETTDGTFAANLIAVTSSNGPSEVSEEDLNNVPEED--EGGDETTDEPYNGPYSDVRLVVSEGKYRMVRRILANSGHPVVELRRERHGEILLDDLPVGKFRDV--TPEELEWAEALKQ 370
BLAST of NO07G03290 vs. NCBI_GenBank
Match: EJK43763.1 (hypothetical protein THAOC_37761 [Thalassiosira oceanica]) HSP 1 Score: 172.9 bits (437), Expect = 1.900e-39 Identity = 114/290 (39.31%), Postives = 166/290 (57.24%), Query Frame = 0 Query: 117 MFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGE--------VIKDPKFHLPSTALLFVNQEPI-RPLPLLVAYNKPLGVHSTMGDPM-----GRPNLEDTLHPRLAK-LFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKE--------EEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMM 384 + R+D+LLA+RGVG+R+ L + +V + + I PK +P A LF++ + + LPLL+AY+KP V S M D + R +L L PR K HPVGRLD +TTGLLLFS DG+LTQ+LLHP V++EY+ATVE DE +L +TL +GVET +G + AEL+ V+++ E + ++D ++ E +R+ V EGKHRMVRR+LAN GYPVV L R+R+G + L +L GE +++ +WA ++ Sbjct: 88 LVRIDKLLAHRGVGTRSATFELAKARRVCWADSDDSTHEERTRIAGPKEKVPLGASLFLDGKLLPGALPLLIAYHKPKFVLSVMRDDIRWKDQARRHLGQVLEPRFLKGGIHPVGRLDYETTGLLLFSTDGKLTQQLLHPRRGVEKEYIATVE---------GAVDEGELSQTLAEGVETTEGIHTAELVKVTQSADGPSSEVDPSRSDASPQDDEKDDDEYCGPYSDVRLVVKEGKHRMVRRILANCGYPVVELKRLRHGEIRLRELPPGEFRNC--SNEEIEWAESLL 366
BLAST of NO07G03290 vs. NCBI_GenBank
Match: XP_005766703.1 (hypothetical protein EMIHUDRAFT_45202, partial [Emiliania huxleyi CCMP1516] >XP_005776398.1 hypothetical protein EMIHUDRAFT_56428, partial [Emiliania huxleyi CCMP1516] >EOD14274.1 hypothetical protein EMIHUDRAFT_45202, partial [Emiliania huxleyi CCMP1516] >EOD23969.1 hypothetical protein EMIHUDRAFT_56428, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 162.5 bits (410), Expect = 2.600e-36 Identity = 109/239 (45.61%), Postives = 132/239 (55.23%), Query Frame = 0 Query: 119 RLDRLLANRGVGSRTEVTVLVRRGKVALQNGEV-------IKDPKFHLPSTALLFVNQEPIRPLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHR 351 RLD+LLA+RG GSR +V L+R+G V L+N E K +P A V+ P PLL AY+KPLGV S+M D GRP+L L K HPVGRLDADTTGLLLF DG LT RLLHP V+REY+ATVE DE LR L GVET + P + G E++ E G++ +R EGK+RMVRR+LAN G+PVV LHR Sbjct: 5 RLDKLLADRGAGSRKDVDRLIRKGLVELENPETGSYEVVGKSGGKLKVPWDACPLVDGFDYPPPPLLAAYHKPLGVVSSMKDDKGRPDLASVLPQPWQKALHPVGRLDADTTGLLLFCRDGDLTHRLLHPKYVVEREYVATVE---------GAVDEELLRGRLAAGVETVEEGEPFVVQG-------ELLSVE-------GQR------VRCVFREGKYRMVRRVLANCGHPVVALHR 214
BLAST of NO07G03290 vs. NCBI_GenBank
Match: GAX15679.1 (23S rRNA pseudouridine2605 synthase [Fistulifera solaris]) HSP 1 Score: 162.2 bits (409), Expect = 3.300e-36 Identity = 109/292 (37.33%), Postives = 162/292 (55.48%), Query Frame = 0 Query: 118 FRLDRLLANRGVGSRTEVTVLVRRGKVALQ-----NGEVIKDPKFHLPSTALLFVNQEPIRPL--PLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGV----SEAIKKEIVEKE--------EEDGEEGGE----KTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMMEGK 387 FR DR+LANR SR++ L++ +V + N +V+K P +P A LF+++ PL PL Y KP + S DPM RP + + HPVGRLD DT+GLLLFS G LTQ+LLHP +++EY+A V D +LR+ L+ GVET++G + A LL V S+ ++ + + + + D +E G + L +R+ V EGK+RMVRR+LAN G+ VV L R R G ++LGDL EG++ ++ +D WA ++++GK Sbjct: 35 FRADRVLANRTGQSRSQCFQLLKDKRVWQKLDDEGNFQVVKGPAEQIPMQASLFIDRAHEIPLPPPLAQVYCKPKWMLSVRSDPMQRPCI-----AHICPNLHPVGRLDYDTSGLLLFSSSGTLTQQLLHPKHEIEKEYVAVV---------TGAVDAERLRQQLQDGVETSEGVHTAVLLDVQHWDSDTVRPYLQQVQAAVPSHYNQTDLQEKGHWRIFEANELSTVRLTVQEGKYRMVRRILANCGHEVVDLRRERLGMIQLGDLPEGKVRDL--TADELAWAEQVLQGK 310
BLAST of NO07G03290 vs. NCBI_GenBank
Match: GAX13583.1 (23S rRNA pseudouridine2605 synthase [Fistulifera solaris]) HSP 1 Score: 159.5 bits (402), Expect = 2.200e-35 Identity = 107/292 (36.64%), Postives = 162/292 (55.48%), Query Frame = 0 Query: 118 FRLDRLLANRGVGSRTEVTVLVRRGKVALQ-----NGEVIKDPKFHLPSTALLFVNQEPIRPL--PLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGV----SEAIKKEIVEKE--------EEDGEEGGE----KTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDASDVGQWARRMMEGK 387 FR DR+LANR SR++ L++ +V + N +V+K P +P A LF+++ PL PL Y KP + S DP+ RP + + HPVGRLD DT+GLLLFS G LTQ+LLHP +++EY+A V D +LR+ L+ GV T++G + A LL V ++ ++ + + + + D +E G + L +R+ V EGK+RMVRR+LAN G+ VV L R R GR++LGDL EG++ ++ +D WA ++++GK Sbjct: 37 FRADRVLANRTGQSRSQCFQLLKEKRVWQKLDDEGNFQVVKGPAEQIPMQASLFIDRTHEIPLPPPLAQVYCKPKWMLSVRSDPLQRPCI-----AHICPNLHPVGRLDYDTSGLLLFSSAGTLTQQLLHPKHEIEKEYVAVV---------TGVVDTERLRQQLQDGVATSEGVHTAVLLDVQHWDTDTVRPYLEQVQGAVPSHYNQTDLQEKGHWRIFEANELSTVRLTVQEGKYRMVRRILANCGHEVVDLRRERLGRIQLGDLPEGKVRDL--TADELAWAEQVLQGK 312
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_067848014.1 (rRNA pseudouridine synthase [Alicyclobacillus mali]) HSP 1 Score: 139.0 bits (349), Expect = 3.000e-29 Identity = 94/251 (37.45%), Postives = 140/251 (55.78%), Query Frame = 0 Query: 117 MFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIR-PLPLLVAYNKPLGVHSTMGDPMGRPNLEDTLHPRLAKLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADG-TYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGE 366 M RL ++LA+ GV SR + L+ G+V++ V + PS + V+ PI P+++A NKP+ ST+ DPMGR + L P + + +PVGRLD DT+GLLLF+ DG+LTQRLLHPS +++ Y A+V G D+ ++R L +GVE DG T PA K E+V + + + G+ V+ + + EG++R VRR+L G PV+ L R+ +G + LG L GE Sbjct: 1 MERLQKVLAHAGVASRRKCEELILAGRVSVDGETVTQLGAKVDPSRQRIAVDGVPIEMEQPVVLALNKPVAYLSTVSDPMGRRTVMQLL-PPIRERVYPVGRLDYDTSGLLLFTNDGELTQRLLHPSREIEKVYRASV------RGIVDR----EIRRALVEGVELEDGLTAPA---------KVEVVRQSDRE--------DGVAVVHLAIHEGRNRQVRRMLERLGLPVLRLKRIAFGPISLGHLKTGE 223
BLAST of NO07G03290 vs. NCBI_GenBank
Match: WP_070768099.1 (rRNA pseudouridine synthase [Corynebacterium sp. HMSC04H06] >OFS23258.1 hypothetical protein HMPREF3067_02200 [Corynebacterium sp. HMSC04H06]) HSP 1 Score: 138.7 bits (348), Expect = 3.900e-29 Identity = 100/268 (37.31%), Postives = 139/268 (51.87%), Query Frame = 0 Query: 111 PKQKVEMFRLDRLLANRGVGSRTEVTVLVRRGKVALQNGEVIKDPKFHLPSTALLFVNQEPIRPLPLLVAY---NKPLGVHSTMGDPMGRPNLEDTLHPRLA---KLFHPVGRLDADTTGLLLFSIDGQLTQRLLHPSGNVQREYLATVELGDEGEGGKDKFDEAKLRETLKQGVETADGTYPAELLGVSEAIKKEIVEKEEEDGEEGGEKTKGLLVLRVGVSEGKHRMVRRLLANAGYPVVGLHRVRYGRVELGDLAEGEIVEIDDA 373 P Q+ E RL ++LA GV SR VL+ +G+V + NG+ I + Y NKP GVHSTM D MGRP + D + R+A +LFH VGRLDADT GLLL + DG+L RL+HP V++ YLATV GEG K KL LK+G+E DG A+ + V +K +G ++R+ + EG+ +VRR+L AGYPV L R + V+LG+L G++ ++D+ Sbjct: 66 PAQQGE--RLQKVLAKAGVASRRHAEVLIEKGRVEV-NGKKITRQGVRXXXXXXXXXXXXXXXXXXXDMEYFVLNKPRGVHSTMSDEMGRPCVGDLISERVAAGQRLFH-VGRLDADTEGLLLLTNDGELANRLMHPKYEVRKTYLATV----LGEGDK------KLVRALKEGIELDDGVAKADFVQVV-------------------DKNQGYSLIRLELHEGRKHIVRRMLKAAGYPVQRLVRTKIHTVQLGELKPGKMRALNDS 300 The following BLAST results are available for this feature:
BLAST of NO07G03290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G03290 ID=NO07G03290|Name=NO07G03290|organism=Nannochloropsis oceanica|type=gene|length=1567bpback to top protein sequence of NO07G03290.1 >NO07G03290.1-protein ID=NO07G03290.1-protein|Name=NO07G03290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bpback to top Synonyms
Publications
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