NO07G02850, NO07G02850 (gene) Nannochloropsis oceanica

Overview
NameNO07G02850
Unique NameNO07G02850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2607
Alignment locationchr7:806547..809153 -

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Properties
Property NameValue
DescriptionTbp-associated factor 15b
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:806547..809153 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO07G02850 vs. NCBI_GenBank
Match: GAQ91413.1 (hypothetical protein KFL_007790050 [Klebsormidium nitens])

HSP 1 Score: 104.8 bits (260), Expect = 4.100e-19
Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 0 
Query:   39 REIRDKLGRVLDKLRVNGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSM 145
            ++  DK G   D    N  I+ISGL  +TTE EI E F  IG + +++QKRGY DQWP+ IK+Y D++GK KG+ VLTYE+P +AH++  FF+G  L G  L V+M
Sbjct:  164 KQCDDKCGDSCD----NARIYISGLPDNTTEDEIRELFSGIGQIGRIRQKRGYKDQWPWNIKIYTDDAGKQKGDGVLTYEDPAAAHSAGGFFNGHSLRGSKLTVTM 265
[Close]
BLAST of NO07G02850 vs. NCBI_GenBank
Match: OAE21470.1 (hypothetical protein AXG93_613s1070 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 104.8 bits (260), Expect = 4.100e-19
Identity = 51/106 (48.11%), Postives = 72/106 (67.92%), Query Frame = 0 
Query:   39 REIRDKLGRVLDKLRVNGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSM 145
            ++  D+ G   D  R    I+ISGL    T  E+ E FG IG V ++KQKRGY DQWP+ +K+Y DE+GK+KG+ VLTYE+P++AH++ SFF+   L G  +KV+M
Sbjct:  137 KQCDDECGDTCDNTR----IYISGLPLDVTVDELRELFGGIGQVARIKQKRGYKDQWPWNVKIYTDEAGKNKGDAVLTYEDPSAAHSAGSFFNDHSLRGNKIKVTM 238
[Close]
BLAST of NO07G02850 vs. NCBI_GenBank
Match: PTQ35011.1 (hypothetical protein MARPO_0074s0009 [Marchantia polymorpha])

HSP 1 Score: 104.8 bits (260), Expect = 4.100e-19
Identity = 51/106 (48.11%), Postives = 72/106 (67.92%), Query Frame = 0 
Query:   39 REIRDKLGRVLDKLRVNGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSM 145
            ++  D+ G   D  R    I+ISGL    T  E+ E FG IG V ++KQKRGY DQWP+ +K+Y DE+GK+KG+ VLTYE+P++AH++ SFF+   L G  +KV+M
Sbjct:  111 KQCDDECGDTCDNTR----IYISGLPLDVTVDELRELFGGIGQVARIKQKRGYKDQWPWNVKIYTDEAGKNKGDAVLTYEDPSAAHSAGSFFNDHSLRGNKIKVTM 212
[Close]
BLAST of NO07G02850 vs. NCBI_GenBank
Match: XP_024578393.1 (tbp-associated factor 15b [Plasmopara halstedii] >CEG42024.1 tbp-associated factor 15b [Plasmopara halstedii])

HSP 1 Score: 103.2 bits (256), Expect = 1.200e-18
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 0 
Query:   58 IFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSMVSYGE 150
            I+IS L   TT  E+ E FG IG+V + KQKRGY DQWP+KIK+Y D  G+ KG+ VLTYE+ N+A  +  FF+G+E+ GK +KV +    E
Sbjct:  114 IYISNLPADTTTDELQEMFGAIGVVAREKQKRGYKDQWPFKIKIYTDAGGQPKGDAVLTYEDSNAARTAPDFFNGSEIRGKVIKVELAGKPE 205
[Close]
BLAST of NO07G02850 vs. NCBI_GenBank
Match: CBN75961.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 102.8 bits (255), Expect = 1.600e-18
Identity = 41/93 (44.09%), Postives = 68/93 (73.12%), Query Frame = 0 
Query:   55 NGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDE-SGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSMVS 147
            N  +++SGL  + TE ++ E F  IGI+ +++QKRGY DQWP+ +++Y+D+ +GK KG+C++ YEEPNSAHA++ +F G +  G  + V+M +
Sbjct:   58 NNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRGYKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAA 150
[Close]
BLAST of NO07G02850 vs. NCBI_GenBank
Match: CDP09239.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 102.4 bits (254), Expect = 2.100e-18
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 0 
Query:   55 NGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSM 145
            N  I+IS L P  T  E+ E FG IG V ++KQKRGY DQWP+ IK+Y D+ GK+KG+ VL+YE+P++AH++  FF+  +L G  + V+M
Sbjct:  847 NSRIYISNLPPDVTIEELQELFGSIGQVARIKQKRGYKDQWPWSIKLYTDDQGKNKGDAVLSYEDPSAAHSAGGFFNNHDLRGYAISVAM 936
[Close]
BLAST of NO07G02850 vs. NCBI_GenBank
Match: XP_012839257.1 (PREDICTED: transcription initiation factor TFIID subunit 15b [Erythranthe guttata])

HSP 1 Score: 102.4 bits (254), Expect = 2.100e-18
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 0 
Query:   55 NGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSM 145
            N  I+IS L P  T  E+ E FG IG V ++KQKRGY DQWP+ IK+Y DE GK+KG+ VL+YE+P++AH++  FF+  ++ G  + VSM
Sbjct:  297 NSRIYISNLPPDVTVEELRELFGSIGQVARIKQKRGYKDQWPWSIKIYTDEQGKNKGDAVLSYEDPSAAHSAGGFFNMHDMRGHKITVSM 386
[Close]
BLAST of NO07G02850 vs. NCBI_GenBank
Match: KZV25758.1 (transcription initiation factor TFIID subunit 15b-like, partial [Dorcoceras hygrometricum])

HSP 1 Score: 102.4 bits (254), Expect = 2.100e-18
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 0 
Query:   55 NGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSM 145
            N  I+IS L P  T  E+ E FG IG V ++KQKRGY DQWP+ IK+Y DE G +KG+ VL+YE+P++AH++  FF+  ++ G  +KVSM
Sbjct:  216 NARIYISNLPPDVTIEELRELFGSIGQVARIKQKRGYKDQWPWSIKLYTDEQGNNKGDAVLSYEDPSAAHSAGGFFNMHDMRGYKIKVSM 305
[Close]
BLAST of NO07G02850 vs. NCBI_GenBank
Match: PIN25450.1 (hypothetical protein CDL12_01816 [Handroanthus impetiginosus])

HSP 1 Score: 102.4 bits (254), Expect = 2.100e-18
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 0 
Query:   55 NGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSM 145
            N  I+IS L P  T  E+ E FG IG V ++KQKRGY DQWP+ IK+Y DE G +KG+ VL+YE+P++AHA+  FF+  +L G  + VSM
Sbjct:  327 NSRIYISNLPPDVTIEELRELFGSIGQVARIKQKRGYKDQWPWSIKLYTDEQGNNKGDAVLSYEDPSAAHAAGGFFNMHDLRGYKISVSM 416
[Close]
BLAST of NO07G02850 vs. NCBI_GenBank
Match: KMZ67317.1 (putative RNA binding protein [Zostera marina])

HSP 1 Score: 102.1 bits (253), Expect = 2.700e-18
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 0 
Query:   55 NGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSM 145
            N  I+IS L    T  E+ E FG IG+V ++KQKRGY DQWP+ IK+Y D++GK KG+  L YE+P++AH++  F++G +L G T+ VSM
Sbjct:  247 NSRIYISNLPSDVTIEELQELFGGIGMVGRIKQKRGYKDQWPWNIKIYTDDNGKKKGDACLAYEDPSAAHSAGGFYNGYDLRGNTISVSM 336
The following BLAST results are available for this feature:
BLAST of NO07G02850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAQ91413.14.100e-1949.06hypothetical protein KFL_007790050 [Klebsormidium ... [more]
OAE21470.14.100e-1948.11hypothetical protein AXG93_613s1070 [Marchantia po... [more]
PTQ35011.14.100e-1948.11hypothetical protein MARPO_0074s0009 [Marchantia p... [more]
XP_024578393.11.200e-1851.09tbp-associated factor 15b [Plasmopara halstedii] >... [more]
CBN75961.11.600e-1844.09conserved unknown protein [Ectocarpus siliculosus][more]
CDP09239.12.100e-1850.00unnamed protein product [Coffea canephora][more]
XP_012839257.12.100e-1851.11PREDICTED: transcription initiation factor TFIID s... [more]
KZV25758.12.100e-1851.11transcription initiation factor TFIID subunit 15b-... [more]
PIN25450.12.100e-1852.22hypothetical protein CDL12_01816 [Handroanthus imp... [more]
KMZ67317.12.700e-1850.00putative RNA binding protein [Zostera marina][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02850.2NO07G02850.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G02850.1NO07G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|661896gene_2615Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100046g27gene3448Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02850.2NO07G02850.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G02850.1NO07G02850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02850 ID=NO07G02850|Name=NO07G02850|organism=Nannochloropsis oceanica|type=gene|length=2607bp
ACATGCTGCTTGTGTGGGTGGCTGCGGTGGTGCGAGAAAGTGGGTGTGGG
TGTGTCGAAGTGCATGAATGATAAAGAAATGAAAATCACTTCGAGCGAGC
GCTTCTTCAAGAAGTTCCTTCTGAATCCTGGATAATTAAGTTGACACTAA
ATTTCTCCACCACAGACGCAGCCAATCCACACCAAGAAGCTTTACCGCAC
AAGGTCCTGCAAGGATCAGTGGAAGTTTGGTGCGGTTGATCGTGTGCTTG
ACTGCGCCGGAAATAAGCCTCGTGGGGAGGTGTAGACTTCTGGCAACGCA
AAACAACAACTCCCTTACCGAGCAATAACAACCTTCCACCTATCTCCTCC
TTTCTCACACACGCGCACACACCAAATAGACAATCTGTTCAACACGAAGA
CAAAGCAACTGGATTAACTATGAGCGAGAGCAACGCCGCGCCGGCCTCTG
AACCGTCTGCGCCTGCAGAGCCTGCGGAGGACCCTAGCGAGGTTATTCGG
TTCTTGACACATCTAAGCCCTACATACGCGGAGCCTGCGAAGGTATGCAG
GAGAAGAATTGCTGGAGTTGAAAGAATGGTGGTCGTATGCAGGAGAAGAG
AGTCTGGAGTAAAAAGAGCGGTGGTCGGCGTGGAGAGGGGCGAGAAGTGG
ATGGTCAGGCACCTCGTGTAGCGGCAGAGAGGGCGGAGGCTGGTAGTAAG
CCATGACGAAGGAACAAGCTGGGTCTCGGGAGTCTTAGCAAGCCGCACGA
ATCATGAATATTAACTTTCCATTCTTATCCGCACAGACATTGGTGGCGGG
TGGGGTGGAGACCGTGGCAGATTTGGCGGGGCTGGATTATCAAGACTTGA
GCAAATATGATATTTCCCGGGAAATTCGGGACAAGCTGGGTCGCGTGgtg
agtgaggcggaaggggtaaagggatgaaaagatgataaaagtgatgagtg
gaataaaggggaaagaagcgcgttcgccatggacggctttgttgggctgc
gtgatagataatgttttgtcgaaggagatggagactgcggccaagactcc
gtgggttaggtaagcataatgagcagttcttccctccccccctccgtcct
tccccgtcccacatactgatgtgtcatttctttttaatttacccagtttc
ataaactgaaaacacacgtgaacatactccggctagttagcttcccatgc
ccccaccctcgcaagggtgggctgagatgagtgcgggcgaagttgtttac
tccggaggagaacaagatgcgtcttccccctcttttcttcttcgaaggaa
gaaagggaggcacgactcggtcgaactcgcataagcaccctgggattaat
ttcctcattccagggccgcttgtttagttggagcacataggtttcttttt
atggagagtctttccccttgaattttcctcaaccttgccgtcctccctcc
ctttttatgcattcggataaccggtgtatcaaccagagcgatttatcaga
tttagggcactatcctctacagctgcatcataaacaacattagcattcct
tactcaatttttcccttcaccctccctccctcccccccttgccagTTGGA
CAAATTGCGTGTTAACGGCACTATCTTTATCTCTGGGCTCAGTCCCTCAA
CAACTGAAGCCGAGATTGCGGAATACTTCGGCCAGATTGGTATTGTCAAG
AAGATGAAGCAAAAGCGAGGgtaagagaaaatgatattgagcgcgtgcgt
tgctttgggtgaagagatgtaccacctccccatcctttcctccttccctt
tttttctccctcccttctccctacttcttgatccagatgttcgacaaaaa
caatctgtaccggggcgggccatgcgaaggcccaaaacgatttgacgtga
cccacgaagatgcaaattccaccttctcttccattctcagtcacccctct
ctccctcccaccctccctccctccctccttattttcttagCTACCCGGAC
CAATGGCCTTACAAAATCAAAATGTACCGCGACGAATCGGGTAAAAGCAA
AGGCGAATGCGTGCTCACGTACGAAGAGCCTAATTCTGCCCATGCTTCGA
TCTCATTTTTCCACGGCACGGAACTGGCTGGGAAGACGTTGAAGGTGAGT
ATGGTGTCATACGGGGAGGATGAGGAGGGAGGAAGTGGAGGAGGGTACTC
CGGAGGAGGGGGGGTTACGGTGGTGGAGGAGGGGGATACGGAGGAGGGAG
GGGCGGAGGGGGTGGGTATGGAGGAGGGCGAGGAGGGGGAGGAGGTGGCT
ATGGAAGGGACGACCGAGGAGGAGGTGGAGGATATAGGGGTGGCGGAGGA
GGAAGGGGAGGGGGAGGAGGGTACGGAGGAGGTTACGGAAGGTACGATGA
TAGGGGCGGACGTAGGGGCGACAGGCGCGACCGGCCGTATTAAATACACA
CAACAGCCTTTTTACGGAAAAAGGTCGAGTAAATGAGCACGCTATACAAG
ATATTTACGAAAGAACCAATCAGAAAGGAAGGGGGAAAAGGGGATACATT
CAACACTCAACAACTTACGTGACACGGATCTCTCGCCCTTGAAGAACTTC
TTGCTCA
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protein sequence of NO07G02850.2

>NO07G02850.2-protein ID=NO07G02850.2-protein|Name=NO07G02850.2|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MNINFPFLSAQTLVAGGVETVADLAGLDYQDLSKYDISREIRDKLGRVLD
KLRVNGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIK
MYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSMVSYGED
EEGGSGGGYSGGGGVTVVEEGDTEEGGAEGVGMEEGEEGEEVAMEGTTEE
EVEDIGVAEEEGEGEEGTEEVTEGTMIGADVGATGATGRIKYTQQPFYGK
RSSK*
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protein sequence of NO07G02850.1

>NO07G02850.1-protein ID=NO07G02850.1-protein|Name=NO07G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MSESNAAPASEPSAPAEPAEDPSEVIRFLTHLSPTYAEPAKTLVAGGVET
VADLAGLDYQDLSKYDISREIRDKLGRVLDKLRVNGTIFISGLSPSTTEA
EIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEP
NSAHASISFFHGTELAGKTLKVSMVSYGEDEEGGSGGGYSGGGGVTVVEE
GDTEEGGAEGVGMEEGEEGEEVAMEGTTEEEVEDIGVAEEEGEGEEGTEE
VTEGTMIGADVGATGATGRIKYTQQPFYGKRSSK*
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Synonyms
Publications