NO07G02850.1, NO07G02850.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G02850.1
Unique Name	NO07G02850.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1395
Alignment location	chr7:806547..809153 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:806547..809153 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G02850.1 vs.
Match: EWM27111.1 (tbp-associated factor 15b [Nannochloropsis gaditana])

HSP 1 Score: 313.2 bits (801), Expect = 8.600e-82
Identity = 157/199 (78.89%), Postives = 175/199 (87.94%), Query Frame = 0

Query:    1 MSESNAAPASEPSAPAEPAEDPSEVIRFLTHLSPTYAEPAKTLVAGGVETVADLAGLDYQDLSKYDISREIRDKLGRVLDKLRVNGTIFISGLSPSTTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEPNSAHASISFFHGTELAGKTLKVSMVSYGEDEEGGSGGGYSGGGGVTVVE 200
            +S + A   + P  P EPAEDP+EV+RFLTHLSPTYAE AK LVA GVETVADLAGL+Y+DL  Y + ++IRDKLGRVLDKLRVNGT+FISGL+P+TTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRD+SGKSKGECVLTYEEPNSAHASISFFHGTELAG+ LKVSMVSYGEDEEGG+ GG    GG+  +E
Sbjct:    9 VSAAEAEAPAAPPEPEEPAEDPNEVVRFLTHLSPTYAEAAKALVAAGVETVADLAGLEYRDLGSYGLPQDIRDKLGRVLDKLRVNGTVFISGLNPATTEAEIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDDSGKSKGECVLTYEEPNSAHASISFFHGTELAGRKLKVSMVSYGEDEEGGNQGGAEETGGIGRIE 207

The following BLAST results are available for this feature:

BLAST of NO07G02850.1 vs.

BLAST of NO07G02850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27111.1	8.600e-82	78.89	tbp-associated factor 15b [Nannochloropsis gaditan...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G02850	NO07G02850	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G02850.1	NO07G02850.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G02850.1.cds1	NO07G02850.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G02850.1.cds2	NO07G02850.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G02850.1.cds3	NO07G02850.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G02850.1.cds4	NO07G02850.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:806547..809153-
coding sequence from alignment at chr7:806547..809153-

mRNA sequence

>NO07G02850.1 ID=NO07G02850.1|Name=NO07G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp
ACATGCTGCTTGTGTGGGTGGCTGCGGTGGTGCGAGAAAGTGGGTGTGGG
TGTGTCGAAGTGCATGAATGATAAAGAAATGAAAATCACTTCGAGCGAGC
GCTTCTTCAAGAAGTTCCTTCTGAATCCTGGATAATTAAGTTGACACTAA
ATTTCTCCACCACAGACGCAGCCAATCCACACCAAGAAGCTTTACCGCAC
AAGGTCCTGCAAGGATCAGTGGAAGTTTGGTGCGGTTGATCGTGTGCTTG
ACTGCGCCGGAAATAAGCCTCGTGGGGAGGTGTAGACTTCTGGCAACGCA
AAACAACAACTCCCTTACCGAGCAATAACAACCTTCCACCTATCTCCTCC
TTTCTCACACACGCGCACACACCAAATAGACAATCTGTTCAACACGAAGA
CAAAGCAACTGGATTAACTATGAGCGAGAGCAACGCCGCGCCGGCCTCTG
AACCGTCTGCGCCTGCAGAGCCTGCGGAGGACCCTAGCGAGGTTATTCGG
TTCTTGACACATCTAAGCCCTACATACGCGGAGCCTGCGAAGACATTGGT
GGCGGGTGGGGTGGAGACCGTGGCAGATTTGGCGGGGCTGGATTATCAAG
ACTTGAGCAAATATGATATTTCCCGGGAAATTCGGGACAAGCTGGGTCGC
GTGTTGGACAAATTGCGTGTTAACGGCACTATCTTTATCTCTGGGCTCAG
TCCCTCAACAACTGAAGCCGAGATTGCGGAATACTTCGGCCAGATTGGTA
TTGTCAAGAAGATGAAGCAAAAGCGAGGCTACCCGGACCAATGGCCTTAC
AAAATCAAAATGTACCGCGACGAATCGGGTAAAAGCAAAGGCGAATGCGT
GCTCACGTACGAAGAGCCTAATTCTGCCCATGCTTCGATCTCATTTTTCC
ACGGCACGGAACTGGCTGGGAAGACGTTGAAGGTGAGTATGGTGTCATAC
GGGGAGGATGAGGAGGGAGGAAGTGGAGGAGGGTACTCCGGAGGAGGGGG
GGTTACGGTGGTGGAGGAGGGGGATACGGAGGAGGGAGGGGCGGAGGGGG
TGGGTATGGAGGAGGGCGAGGAGGGGGAGGAGGTGGCTATGGAAGGGACG
ACCGAGGAGGAGGTGGAGGATATAGGGGTGGCGGAGGAGGAAGGGGAGGG
GGAGGAGGGTACGGAGGAGGTTACGGAAGGTACGATGATAGGGGCGGACG
TAGGGGCGACAGGCGCGACCGGCCGTATTAAATACACACAACAGCCTTTT
TACGGAAAAAGGTCGAGTAAATGAGCACGCTATACAAGATATTTACGAAA
GAACCAATCAGAAAGGAAGGGGGAAAAGGGGATACATTCAACACTCAACA
ACTTACGTGACACGGATCTCTCGCCCTTGAAGAACTTCTTGCTCA

protein sequence of NO07G02850.1

>NO07G02850.1-protein ID=NO07G02850.1-protein|Name=NO07G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MSESNAAPASEPSAPAEPAEDPSEVIRFLTHLSPTYAEPAKTLVAGGVET
VADLAGLDYQDLSKYDISREIRDKLGRVLDKLRVNGTIFISGLSPSTTEA
EIAEYFGQIGIVKKMKQKRGYPDQWPYKIKMYRDESGKSKGECVLTYEEP
NSAHASISFFHGTELAGKTLKVSMVSYGEDEEGGSGGGYSGGGGVTVVEE
GDTEEGGAEGVGMEEGEEGEEVAMEGTTEEEVEDIGVAEEEGEGEEGTEE
VTEGTMIGADVGATGATGRIKYTQQPFYGKRSSK*

mRNA from alignment at chr7:806547..809153-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G02850.1 ID=NO07G02850.1|Name=NO07G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp|location=Sequence derived from alignment at chr7:806547..809153- (Nannochloropsis oceanica)
ACATGCTGCTTGTGTGGGTGGCTGCGGTGGTGCGAGAAAGTGGGTGTGGG
TGTGTCGAAGTGCATGAATGATAAAGAAATGAAAATCACTTCGAGCGAGC
GCTTCTTCAAGAAGTTCCTTCTGAATCCTGGATAATTAAGTTGACACTAA
ATTTCTCCACCACAGACGCAGCCAATCCACACCAAGAAGCTTTACCGCAC
AAGGTCCTGCAAGGATCAGTGGAAGTTTGGTGCGGTTGATCGTGTGCTTG
ACTGCGCCGGAAATAAGCCTCGTGGGGAGGTGTAGACTTCTGGCAACGCA
AAACAACAACTCCCTTACCGAGCAATAACAACCTTCCACCTATCTCCTCC
TTTCTCACACACGCGCACACACCAAATAGACAATCTGTTCAACACGAAGA
CAAAGCAACTGGATTAACTATGAGCGAGAGCAACGCCGCGCCGGCCTCTG
AACCGTCTGCGCCTGCAGAGCCTGCGGAGGACCCTAGCGAGGTTATTCGG
TTCTTGACACATCTAAGCCCTACATACGCGGAGCCTGCGAAGGTATGCAG
GAGAAGAATTGCTGGAGTTGAAAGAATGGTGGTCGTATGCAGGAGAAGAG
AGTCTGGAGTAAAAAGAGCGGTGGTCGGCGTGGAGAGGGGCGAGAAGTGG
ATGGTCAGGCACCTCGTGTAGCGGCAGAGAGGGCGGAGGCTGGTAGTAAG
CCATGACGAAGGAACAAGCTGGGTCTCGGGAGTCTTAGCAAGCCGCACGA
ATCATGAATATTAACTTTCCATTCTTATCCGCACAGACATTGGTGGCGGG
TGGGGTGGAGACCGTGGCAGATTTGGCGGGGCTGGATTATCAAGACTTGA
GCAAATATGATATTTCCCGGGAAATTCGGGACAAGCTGGGTCGCGTGGTG
AGTGAGGCGGAAGGGGTAAAGGGATGAAAAGATGATAAAAGTGATGAGTG
GAATAAAGGGGAAAGAAGCGCGTTCGCCATGGACGGCTTTGTTGGGCTGC
GTGATAGATAATGTTTTGTCGAAGGAGATGGAGACTGCGGCCAAGACTCC
GTGGGTTAGGTAAGCATAATGAGCAGTTCTTCCCTCCCCCCCTCCGTCCT
TCCCCGTCCCACATACTGATGTGTCATTTCTTTTTAATTTACCCAGTTTC
ATAAACTGAAAACACACGTGAACATACTCCGGCTAGTTAGCTTCCCATGC
CCCCACCCTCGCAAGGGTGGGCTGAGATGAGTGCGGGCGAAGTTGTTTAC
TCCGGAGGAGAACAAGATGCGTCTTCCCCCTCTTTTCTTCTTCGAAGGAA
GAAAGGGAGGCACGACTCGGTCGAACTCGCATAAGCACCCTGGGATTAAT
TTCCTCATTCCAGGGCCGCTTGTTTAGTTGGAGCACATAGGTTTCTTTTT
ATGGAGAGTCTTTCCCCTTGAATTTTCCTCAACCTTGCCGTCCTCCCTCC
CTTTTTATGCATTCGGATAACCGGTGTATCAACCAGAGCGATTTATCAGA
TTTAGGGCACTATCCTCTACAGCTGCATCATAAACAACATTAGCATTCCT
TACTCAATTTTTCCCTTCACCCTCCCTCCCTCCCCCCCTTGCCAGTTGGA
CAAATTGCGTGTTAACGGCACTATCTTTATCTCTGGGCTCAGTCCCTCAA
CAACTGAAGCCGAGATTGCGGAATACTTCGGCCAGATTGGTATTGTCAAG
AAGATGAAGCAAAAGCGAGGGTAAGAGAAAATGATATTGAGCGCGTGCGT
TGCTTTGGGTGAAGAGATGTACCACCTCCCCATCCTTTCCTCCTTCCCTT
TTTTTCTCCCTCCCTTCTCCCTACTTCTTGATCCAGATGTTCGACAAAAA
CAATCTGTACCGGGGCGGGCCATGCGAAGGCCCAAAACGATTTGACGTGA
CCCACGAAGATGCAAATTCCACCTTCTCTTCCATTCTCAGTCACCCCTCT
CTCCCTCCCACCCTCCCTCCCTCCCTCCTTATTTTCTTAGCTACCCGGAC
CAATGGCCTTACAAAATCAAAATGTACCGCGACGAATCGGGTAAAAGCAA
AGGCGAATGCGTGCTCACGTACGAAGAGCCTAATTCTGCCCATGCTTCGA
TCTCATTTTTCCACGGCACGGAACTGGCTGGGAAGACGTTGAAGGTGAGT
ATGGTGTCATACGGGGAGGATGAGGAGGGAGGAAGTGGAGGAGGGTACTC
CGGAGGAGGGGGGGTTACGGTGGTGGAGGAGGGGGATACGGAGGAGGGAG
GGGCGGAGGGGGTGGGTATGGAGGAGGGCGAGGAGGGGGAGGAGGTGGCT
ATGGAAGGGACGACCGAGGAGGAGGTGGAGGATATAGGGGTGGCGGAGGA
GGAAGGGGAGGGGGAGGAGGGTACGGAGGAGGTTACGGAAGGTACGATGA
TAGGGGCGGACGTAGGGGCGACAGGCGCGACCGGCCGTATTAAATACACA
CAACAGCCTTTTTACGGAAAAAGGTCGAGTAAATGAGCACGCTATACAAG
ATATTTACGAAAGAACCAATCAGAAAGGAAGGGGGAAAAGGGGATACATT
CAACACTCAACAACTTACGTGACACGGATCTCTCGCCCTTGAAGAACTTC
TTGCTCA

Coding sequence (CDS) from alignment at chr7:806547..809153-

>NO07G02850.1 ID=NO07G02850.1|Name=NO07G02850.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr7:806547..809153- (Nannochloropsis oceanica)
ATGAGCGAGAGCAACGCCGCGCCGGCCTCTGAACCGTCTGCGCCTGCAGA
GCCTGCGGAGGACCCTAGCGAGGTTATTCGGTTCTTGACACATCTAAGCC
CTACATACGCGGAGCCTGCGAAGACATTGGTGGCGGGTGGGGTGGAGACC
GTGGCAGATTTGGCGGGGCTGGATTATCAAGACTTGAGCAAATATGATAT
TTCCCGGGAAATTCGGGACAAGCTGGGTCGCGTGTTGGACAAATTGCGTG
TTAACGGCACTATCTTTATCTCTGGGCTCAGTCCCTCAACAACTGAAGCC
GAGATTGCGGAATACTTCGGCCAGATTGGTATTGTCAAGAAGATGAAGCA
AAAGCGAGGCTACCCGGACCAATGGCCTTACAAAATCAAAATGTACCGCG
ACGAATCGGGTAAAAGCAAAGGCGAATGCGTGCTCACGTACGAAGAGCCT
AATTCTGCCCATGCTTCGATCTCATTTTTCCACGGCACGGAACTGGCTGG
GAAGACGTTGAAGGTGAGTATGGTGTCATACGGGGAGGATGAGGAGGGAG
GAAGTGGAGGAGGGTACTCCGGAGGAGGGGGGGTTACGGTGGTGGAGGAG
GGGGATACGGAGGAGGGAGGGGCGGAGGGGGTGGGTATGGAGGAGGGCGA
GGAGGGGGAGGAGGTGGCTATGGAAGGGACGACCGAGGAGGAGGTGGAGG
ATATAGGGGTGGCGGAGGAGGAAGGGGAGGGGGAGGAGGGTACGGAGGAG
GTTACGGAAGGTACGATGATAGGGGCGGACGTAGGGGCGACAGGCGCGAC
CGGCCGTATTAAATACACACAACAGCCTTTTTACGGAAAAAGGTCGAGTA
AATGA

Synonyms

Publications