NO07G02840, NO07G02840 (gene) Nannochloropsis oceanica

Overview
NameNO07G02840
Unique NameNO07G02840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1254
Alignment locationchr7:804897..806150 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:804897..806150 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO07G02840 vs. NCBI_GenBank
Match: EWM27112.1 (hypothetical protein Naga_100046g29 [Nannochloropsis gaditana] >EWM27113.1 hypothetical protein Naga_100046g29 [Nannochloropsis gaditana])

HSP 1 Score: 152.5 bits (384), Expect = 1.500e-33
Identity = 73/149 (48.99%), Postives = 106/149 (71.14%), Query Frame = 0 
Query:   36 AEKQP-----RKRNRKFACCAICVSSFLILGILAAIFYPRVPRVSLYSSSLLEIDGFTGATANFVIKVENNNFYTLAFQDLVADVHDFDGIKIGTITRPERFKVEARSSGLVTTTGVFRTSLPQIGLVGLNCLSNELETQVDIRATVDL 180
            A KQP      +   KF C  + +   L+LGIL AIF+PR P+++L++SS+L IDGFTGATA FV ++ N N Y ++FQ+LVA+V+D +GI +GTI RP RF+V  R++G VT TGVFR++LPQ+  VG++C+ N + T + +R + DL
Sbjct:   99 AYKQPPRTTCERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVLAIDGFTGATARFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRFQVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLRTSGDL 247
[Close]
BLAST of NO07G02840 vs. NCBI_GenBank
Match: EWM21586.1 (hypothetical protein Naga_100012g8 [Nannochloropsis gaditana])

HSP 1 Score: 112.8 bits (281), Expect = 1.300e-21
Identity = 81/246 (32.93%), Postives = 119/246 (48.37%), Query Frame = 0 
Query:   10 ETKAEQHMAYNVHPFEVEEGTSEVFKAEKQPRKRNRKFACCAICVSSFLILGILAAI----------FYPRVPRVSLYSSSLLEIDGF--TGATANFVIKVENNNFYTLAFQDLVADVHDFDGIKIGTITRPERFKVEARSSGLVTTTGVFRTSLPQIGLVGLNCLSNELETQVDIRATVDLRL----FR-------------------GADVPPPEGKPASPA-PTLAEQIGNAINEGINNLFGG 220
            ETK E++   ++ P E+E+G     KAE  P    +K   CA      + LGI+A I            P+ P  +L   S L +DG     AT +  +KV+N N Y +AF+DL  DV+DF G  IG +TRPERF+V+ RS+ ++  T   + S  +I  +G+NCL N+  T++ ++ TV  R     FR                   G+    P   PA+     +   IG AI++GI  L GG
Sbjct:   16 ETKEEENGGRDILPLEMEDGR----KAESAPPAEVKKRGFCARHKGKLIFLGIVALILIALAIAIPLLMPKDPTATLLEQSNLRLDGLGAGSATIDLTMKVQNPNPYAIAFEDLRLDVYDFSGAHIGELTRPERFRVQGRSTNIMNATATMQPSFFEILSMGVNCLQNDNLTKLKLQGTVQARFAGRTFRTQVGPMEQLTQCVATNIAGGSSXXXPGVTPAAVGNGQIINSIGEAISQGIQRLRGG 257
The following BLAST results are available for this feature:
BLAST of NO07G02840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27112.11.500e-3348.99hypothetical protein Naga_100046g29 [Nannochlorops... [more]
EWM21586.11.300e-2132.93hypothetical protein Naga_100012g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02840.1NO07G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564130gene_2614Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02840.1NO07G02840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02840 ID=NO07G02840|Name=NO07G02840|organism=Nannochloropsis oceanica|type=gene|length=1254bp
ATGGCACCCGTCGAACGAGGCGCAGAAGAGACCAAGGCCGAGCAGCACAT
GGCTTACAATGTCCACCCTTTTGAAGTGGAGGAGGGCACTTCGGAGGTCT
TCAAAGCCGAGAAACAACCGAGGAAGCGTAATAGGAAGTTTGCATGTTGT
GCAATTTGCGTGTCCTCGTTCTTAATTCTCGGCATCCTGGCCGCTATCTT
CTACCCCAGGGTACCGCGTGTATCACTGTATAGCTCAAGCCTTCTGGAGA
TCGATGGTTTTACTGgtaagcgggcaggggatgcagaagttgtcgccccg
gctttggagttggaccatcttagcaccttttctttttcttgtgctcctta
gattataaggcacaaaacactctacctgccgcaggataagccattattta
taatgcctaccatgggatttggacattctaaaattttctttttccacatc
cctcaccatgacctcttcccacctcaatcaacccgacgatagGCGCCACG
GCCAATTTCGTCATCAAGGTTGAGAACAACAATTTTTATACATTAGCCTT
CCAAGACCTCGTGGCAGATGTGCATGACTTCGATGGCATTAAAATCGGTA
CCATCACAAGGCCTGAGCGATTTAAAGTGGAGGCTCGCTCGTCGGGATTG
GTGACTACCACAGGCGTGTTCCGCACTTCATTACCACAGATTGGTTTGGT
TGGACTGAATTGCCTTTCTAATGAGCTCGAGACCCAGGTCGACATCCGGG
CAACGGTAGACTTGCGATTGTTCAGGGgtacgcggcgaattccatttacc
accaacgaaagagtgccatgcagtgtcacaaacatcggagggggaagcgg
tgcaggtgatgctcgtggtgctcctgtgcccgcttccccactggctccca
ttacgcgtaccggaggttggcgcggttcagaaggtatgcctgcgcccgct
acccctgtagctcctgttgccagtgccgctgctccccctcctccttctcc
tgtccatgcagctccacgcgcacaacctcctgccgctcctgtggccgaag
tgactgccccccctcccccccccctcctggtcgtgccactactacccccc
cccccctcctgctggtgtcggtgcccccccttctgcagGTGCCGATGTTC
CTCCTCCAGAAGGAAAACCGGCTTCCCCGGCTCCCACATTGGCCGAGCAA
ATTGGCAATGCAATCAACGAAGGTATTAACAATCTCTTTGGTGGAGGACG
CTAA
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protein sequence of NO07G02840.1

>NO07G02840.1-protein ID=NO07G02840.1-protein|Name=NO07G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MAPVERGAEETKAEQHMAYNVHPFEVEEGTSEVFKAEKQPRKRNRKFACC
AICVSSFLILGILAAIFYPRVPRVSLYSSSLLEIDGFTGATANFVIKVEN
NNFYTLAFQDLVADVHDFDGIKIGTITRPERFKVEARSSGLVTTTGVFRT
SLPQIGLVGLNCLSNELETQVDIRATVDLRLFRGADVPPPEGKPASPAPT
LAEQIGNAINEGINNLFGGGR*
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Synonyms
Publications