NO07G02840.1, NO07G02840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02840.1
Unique NameNO07G02840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length666
Alignment locationchr7:804897..806150 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:804897..806150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02840.1 vs.
Match: EWM27112.1 (hypothetical protein Naga_100046g29 [Nannochloropsis gaditana]; EWM27113.1 hypothetical protein Naga_100046g29 [Nannochloropsis gaditana])

HSP 1 Score: 152.9 bits (385), Expect = 1.200e-33
Identity = 76/167 (45.51%), Postives = 119/167 (71.26%), Query Frame = 0 
Query:   20 NVHPFEVEEGTSEVFK--AEKQPRK----RNR-KFACCAICVSSFLILGILAAIFYPRVPRVSLYSSSLLEIDGFTGATANFVIKVENNNFYTLAFQDLVADVHDFDGIKIGTITRPERFKVEARSSGLVTTTGVFRTSLPQIGLVGLNCLSNELETQVDIRATVDL 180
            ++H +++++   + +   A KQP +    R+R KF C  + +   L+LGIL AIF+PR P+++L++SS+L IDGFTGATA FV ++ N N Y ++FQ+LVA+V+D +GI +GTI RP RF+V  R++G VT TGVFR++LPQ+  VG++C+ N + T + +R + DL
Sbjct:   81 SMHSYDMDDVMVDPYTGLAYKQPPRTTCERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVLAIDGFTGATARFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRFQVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLRTSGDL 247
The following BLAST results are available for this feature:
BLAST of NO07G02840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27112.11.200e-3345.51hypothetical protein Naga_100046g29 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02840NO07G02840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02840.1NO07G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02840.1.cds1NO07G02840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02840.1.cds2NO07G02840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02840.1.cds3NO07G02840.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02840.1 ID=NO07G02840.1|Name=NO07G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=666bp
ATGGCACCCGTCGAACGAGGCGCAGAAGAGACCAAGGCCGAGCAGCACAT
GGCTTACAATGTCCACCCTTTTGAAGTGGAGGAGGGCACTTCGGAGGTCT
TCAAAGCCGAGAAACAACCGAGGAAGCGTAATAGGAAGTTTGCATGTTGT
GCAATTTGCGTGTCCTCGTTCTTAATTCTCGGCATCCTGGCCGCTATCTT
CTACCCCAGGGTACCGCGTGTATCACTGTATAGCTCAAGCCTTCTGGAGA
TCGATGGTTTTACTGGCGCCACGGCCAATTTCGTCATCAAGGTTGAGAAC
AACAATTTTTATACATTAGCCTTCCAAGACCTCGTGGCAGATGTGCATGA
CTTCGATGGCATTAAAATCGGTACCATCACAAGGCCTGAGCGATTTAAAG
TGGAGGCTCGCTCGTCGGGATTGGTGACTACCACAGGCGTGTTCCGCACT
TCATTACCACAGATTGGTTTGGTTGGACTGAATTGCCTTTCTAATGAGCT
CGAGACCCAGGTCGACATCCGGGCAACGGTAGACTTGCGATTGTTCAGGG
GTGCCGATGTTCCTCCTCCAGAAGGAAAACCGGCTTCCCCGGCTCCCACA
TTGGCCGAGCAAATTGGCAATGCAATCAACGAAGGTATTAACAATCTCTT
TGGTGGAGGACGCTAA
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protein sequence of NO07G02840.1

>NO07G02840.1-protein ID=NO07G02840.1-protein|Name=NO07G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MAPVERGAEETKAEQHMAYNVHPFEVEEGTSEVFKAEKQPRKRNRKFACC
AICVSSFLILGILAAIFYPRVPRVSLYSSSLLEIDGFTGATANFVIKVEN
NNFYTLAFQDLVADVHDFDGIKIGTITRPERFKVEARSSGLVTTTGVFRT
SLPQIGLVGLNCLSNELETQVDIRATVDLRLFRGADVPPPEGKPASPAPT
LAEQIGNAINEGINNLFGGGR*
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mRNA from alignment at chr7:804897..806150-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02840.1 ID=NO07G02840.1|Name=NO07G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1254bp|location=Sequence derived from alignment at chr7:804897..806150- (Nannochloropsis oceanica)
ATGGCACCCGTCGAACGAGGCGCAGAAGAGACCAAGGCCGAGCAGCACAT
GGCTTACAATGTCCACCCTTTTGAAGTGGAGGAGGGCACTTCGGAGGTCT
TCAAAGCCGAGAAACAACCGAGGAAGCGTAATAGGAAGTTTGCATGTTGT
GCAATTTGCGTGTCCTCGTTCTTAATTCTCGGCATCCTGGCCGCTATCTT
CTACCCCAGGGTACCGCGTGTATCACTGTATAGCTCAAGCCTTCTGGAGA
TCGATGGTTTTACTGGTAAGCGGGCAGGGGATGCAGAAGTTGTCGCCCCG
GCTTTGGAGTTGGACCATCTTAGCACCTTTTCTTTTTCTTGTGCTCCTTA
GATTATAAGGCACAAAACACTCTACCTGCCGCAGGATAAGCCATTATTTA
TAATGCCTACCATGGGATTTGGACATTCTAAAATTTTCTTTTTCCACATC
CCTCACCATGACCTCTTCCCACCTCAATCAACCCGACGATAGGCGCCACG
GCCAATTTCGTCATCAAGGTTGAGAACAACAATTTTTATACATTAGCCTT
CCAAGACCTCGTGGCAGATGTGCATGACTTCGATGGCATTAAAATCGGTA
CCATCACAAGGCCTGAGCGATTTAAAGTGGAGGCTCGCTCGTCGGGATTG
GTGACTACCACAGGCGTGTTCCGCACTTCATTACCACAGATTGGTTTGGT
TGGACTGAATTGCCTTTCTAATGAGCTCGAGACCCAGGTCGACATCCGGG
CAACGGTAGACTTGCGATTGTTCAGGGGTACGCGGCGAATTCCATTTACC
ACCAACGAAAGAGTGCCATGCAGTGTCACAAACATCGGAGGGGGAAGCGG
TGCAGGTGATGCTCGTGGTGCTCCTGTGCCCGCTTCCCCACTGGCTCCCA
TTACGCGTACCGGAGGTTGGCGCGGTTCAGAAGGTATGCCTGCGCCCGCT
ACCCCTGTAGCTCCTGTTGCCAGTGCCGCTGCTCCCCCTCCTCCTTCTCC
TGTCCATGCAGCTCCACGCGCACAACCTCCTGCCGCTCCTGTGGCCGAAG
TGACTGCCCCCCCTCCCCCCCCCCTCCTGGTCGTGCCACTACTACCCCCC
CCCCCCTCCTGCTGGTGTCGGTGCCCCCCCTTCTGCAGGTGCCGATGTTC
CTCCTCCAGAAGGAAAACCGGCTTCCCCGGCTCCCACATTGGCCGAGCAA
ATTGGCAATGCAATCAACGAAGGTATTAACAATCTCTTTGGTGGAGGACG
CTAA
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Coding sequence (CDS) from alignment at chr7:804897..806150-

>NO07G02840.1 ID=NO07G02840.1|Name=NO07G02840.1|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at chr7:804897..806150- (Nannochloropsis oceanica)
ATGGCACCCGTCGAACGAGGCGCAGAAGAGACCAAGGCCGAGCAGCACAT
GGCTTACAATGTCCACCCTTTTGAAGTGGAGGAGGGCACTTCGGAGGTCT
TCAAAGCCGAGAAACAACCGAGGAAGCGTAATAGGAAGTTTGCATGTTGT
GCAATTTGCGTGTCCTCGTTCTTAATTCTCGGCATCCTGGCCGCTATCTT
CTACCCCAGGGTACCGCGTGTATCACTGTATAGCTCAAGCCTTCTGGAGA
TCGATGGTTTTACTGGCGCCACGGCCAATTTCGTCATCAAGGTTGAGAAC
AACAATTTTTATACATTAGCCTTCCAAGACCTCGTGGCAGATGTGCATGA
CTTCGATGGCATTAAAATCGGTACCATCACAAGGCCTGAGCGATTTAAAG
TGGAGGCTCGCTCGTCGGGATTGGTGACTACCACAGGCGTGTTCCGCACT
TCATTACCACAGATTGGTTTGGTTGGACTGAATTGCCTTTCTAATGAGCT
CGAGACCCAGGTCGACATCCGGGCAACGGTAGACTTGCGATTGTTCAGGG
GTGCCGATGTTCCTCCTCCAGAAGGAAAACCGGCTTCCCCGGCTCCCACA
TTGGCCGAGCAAATTGGCAATGCAATCAACGAAGGTATTAACAATCTCTT
TGGTGGAGGACGCTAA
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Synonyms
Publications