NO07G02830, NO07G02830 (gene) Nannochloropsis oceanica

Overview
NameNO07G02830
Unique NameNO07G02830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1301
Alignment locationchr7:802007..803307 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:802007..803307 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO07G02830 vs. NCBI_GenBank
Match: EWM27112.1 (hypothetical protein Naga_100046g29 [Nannochloropsis gaditana] >EWM27113.1 hypothetical protein Naga_100046g29 [Nannochloropsis gaditana])

HSP 1 Score: 149.1 bits (375), Expect = 2.700e-32
Identity = 78/173 (45.09%), Postives = 112/173 (64.74%), Query Frame = 0 
Query:   56 RTTWERHRNKLPWCGLFVLLALLVGVALAVFYPKRPQVSLFTSSVLEIDGFVGARANFVVKIDNPNYFAFNVDDVVAEVSGYDGKQIGTLLRPEHFQVDRRTTSFMPATGIFQNNLLQVGLIGMDCMNNRGMTLIHINAAANVRILGRNRRVSMIITEPVACAVRNVAGSNNG 229
            RTT ERHR K    G+ + L L++G+ +A+F+P+ PQ++LF SSVL IDGF GA A FV +I N N +  +  ++VAEV   +G  +GT+LRP  FQV  R T F+ ATG+F++ L Q+  +GMDCM N  MT + +  + ++ +LG  RRV    T  V C V+N+  +NNG
Sbjct:  105 RTTCERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVLAIDGFTGATARFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRFQVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLRTSGDLLVLGTTRRVVSSATVMVNCNVQNI--NNNG 275
[Close]
BLAST of NO07G02830 vs. NCBI_GenBank
Match: EWM21586.1 (hypothetical protein Naga_100012g8 [Nannochloropsis gaditana])

HSP 1 Score: 100.9 bits (250), Expect = 8.300e-18
Identity = 57/201 (28.36%), Postives = 98/201 (48.76%), Query Frame = 0 
Query:   30 KTVNPLELAHSSSITIPDSPQRYRDKRTTWERHRNKLPWCGLFVLLALLVGVALAVFYPKRPQVSLFTSSVLEIDGFVGARA--NFVVKIDNPNYFAFNVDDVVAEVSGYDGKQIGTLLRPEHFQVDRRTTSFMPATGIFQNNLLQVGLIGMDCMNNRGMTLIHINAAANVRILGRNRRVSMIITEPVA-CAVRNVAGSNN 228
            + + PLE+          +P     KR    RH+ KL + G+  L+ + + +A+ +  PK P  +L   S L +DG     A  +  +K+ NPN +A   +D+  +V  + G  IG L RPE F+V  R+T+ M AT   Q +  ++  +G++C+ N  +T + +      R  GR  R  +   E +  C   N+AG ++
Sbjct:   25 RDILPLEMEDGRK--AESAPPAEVKKRGFCARHKGKLIFLGIVALILIALAIAIPLLMPKDPTATLLEQSNLRLDGLGAGSATIDLTMKVQNPNPYAIAFEDLRLDVYDFSGAHIGELTRPERFRVQGRSTNIMNATATMQPSFFEILSMGVNCLQNDNLTKLKLQGTVQARFAGRTFRTQVGPMEQLTQCVATNIAGGSS 223
The following BLAST results are available for this feature:
BLAST of NO07G02830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27112.12.700e-3245.09hypothetical protein Naga_100046g29 [Nannochlorops... [more]
EWM21586.18.300e-1828.36hypothetical protein Naga_100012g8 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000586NSK000586Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02830.1NO07G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|333700gene_2613Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100046g29gene3450Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02830.1NO07G02830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02830 ID=NO07G02830|Name=NO07G02830|organism=Nannochloropsis oceanica|type=gene|length=1301bp
ATGCCATATCACGAACAAAGCATACGAGATGTCAGGGCTGAGTGGTACGA
TGAAGACATGGACTTTGAGCCAAACAGGGTCAAGGTCAAGACCGTGAATC
CATTGGAGCTGGCGCACAGCAGCAGTATCACAATACCTGACTCTCCTCAG
AGGTATCGGGATAAACGCACCACGTGGGAGCGGCATCGCAACAAGTTACC
TTGGTGTGGGCTCTTCGTGTTATTGGCTTTACTCGTCGGCGTTGCCCTCG
CCGTCTTCTACCCTAAGAGGCCGCAGGTGTCGCTATTTACCTCAAGCGTT
CTGGAAATCGACGGCTTTGTTGgtaagggttgtgaagaagcaagaggaag
aacgtgccgctctactgtaaaaagtgagcataccgtaaaccgagtcagct
cctcataattcgtgctttccatccataccaaacgttacaacaccaacagG
GGCCAGAGCCAATTTTGTCGTAAAAATCGATAATCCGAATTACTTCGCGT
TCAATGTGGACGACGTGGTTGCCGAAGTTTCCGGGTACGACGGCAAGCAA
ATCGGCACCCTCCTCCGACCGGAACATTTTCAAGTCGATAGAAGGACGAC
ATCCTTTATGCCAGCCACGGGAATATTCCAAAACAACCTGCTACAAGTGG
GTTTAATTGGAATGGACTGCATGAACAATAGGGGCATGACACTCATACAT
ATCAATGCAGCGGCGAACGTGAGAATTCTGGGGAGGAATCGTCGGGTTTC
AATGATCATCACTGAGCCCGTGGCCTGCGCCGTCAGAAACGTGGCTGGTA
GCAATAATGGAAgtatggttgacggcaatgatcgaaatatgattgatgac
gatagtacaccgggccgttggagaccctcgcctattgatccttcttcgcc
tgtgcgccaaggcaatgatctaagTGGTGGTGGTAATCAGGGTGATGGCA
ATCAAGCCAGTGGTGGCAATCAAGCTGGTGGTGCAGGTAACCAGGCCGGC
GTGGGCGACCAACCTGCTGGTGCTGGTAGTCAGGCGGGTGGTGCCAATCA
GGCCGGTACGGGTAATCAGGCTGGTGGTGCTGGGTATAAACCTGGTGCTG
GCAACCAAGCGGAAGGTGGTAACCAGGCTAGTGATGCTGGTGGTGGTCAG
GCCGGTGCTGGCAACCAAGCCGGTGGTAGCAATCAGGCTTGGGGTGGTGG
CGCTAATCAAGCTTGGGGTGGTGGTGGTCAGGCTGGTGCTGGCGACCAAG
CCGGTGGTGGTAGTCAGGCTGGTGCTGGTAGTGCTGCGGGTGGTGGTTTA
A
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protein sequence of NO07G02830.1

>NO07G02830.1-protein ID=NO07G02830.1-protein|Name=NO07G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MPYHEQSIRDVRAEWYDEDMDFEPNRVKVKTVNPLELAHSSSITIPDSPQ
RYRDKRTTWERHRNKLPWCGLFVLLALLVGVALAVFYPKRPQVSLFTSSV
LEIDGFVGARANFVVKIDNPNYFAFNVDDVVAEVSGYDGKQIGTLLRPEH
FQVDRRTTSFMPATGIFQNNLLQVGLIGMDCMNNRGMTLIHINAAANVRI
LGRNRRVSMIITEPVACAVRNVAGSNNGMVVVIRVMAIKPVVAIKLVVQV
TRPAWATNLLVLVVRRVVPIRPVRVIRLVVLGINLVLATKRKVVTRLVML
VVVRPVLATKPVVAIRLGVVALIKLGVVVVRLVLATKPVVVVRLVLVVLR
VVV*
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Synonyms
Publications