NO07G02830.1, NO07G02830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02830.1
Unique NameNO07G02830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr7:802007..803307 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:802007..803307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02830.1 vs.
Match: EWM27112.1 (hypothetical protein Naga_100046g29 [Nannochloropsis gaditana]; EWM27113.1 hypothetical protein Naga_100046g29 [Nannochloropsis gaditana])

HSP 1 Score: 149.1 bits (375), Expect = 2.700e-32
Identity = 78/173 (45.09%), Postives = 112/173 (64.74%), Query Frame = 0 
Query:   56 RTTWERHRNKLPWCGLFVLLALLVGVALAVFYPKRPQVSLFTSSVLEIDGFVGARANFVVKIDNPNYFAFNVDDVVAEVSGYDGKQIGTLLRPEHFQVDRRTTSFMPATGIFQNNLLQVGLIGMDCMNNRGMTLIHINAAANVRILGRNRRVSMIITEPVACAVRNVAGSNNG 229
            RTT ERHR K    G+ + L L++G+ +A+F+P+ PQ++LF SSVL IDGF GA A FV +I N N +  +  ++VAEV   +G  +GT+LRP  FQV  R T F+ ATG+F++ L Q+  +GMDCM N  MT + +  + ++ +LG  RRV    T  V C V+N+  +NNG
Sbjct:  105 RTTCERHRGKFICLGVTLGLLLVLGILIAIFFPRAPQITLFNSSVLAIDGFTGATARFVFQIRNRNLYQVSFQNLVAEVYDTNGIFLGTILRPGRFQVFGRATGFVTATGVFRSALPQLANVGMDCMQNGMMTHLQLRTSGDLLVLGTTRRVVSSATVMVNCNVQNI--NNNG 275
The following BLAST results are available for this feature:
BLAST of NO07G02830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27112.12.700e-3245.09hypothetical protein Naga_100046g29 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02830NO07G02830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02830.1NO07G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02830.1.cds1NO07G02830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02830.1.cds2NO07G02830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G02830.1.cds3NO07G02830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02830.1 ID=NO07G02830.1|Name=NO07G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
ATGCCATATCACGAACAAAGCATACGAGATGTCAGGGCTGAGTGGTACGA
TGAAGACATGGACTTTGAGCCAAACAGGGTCAAGGTCAAGACCGTGAATC
CATTGGAGCTGGCGCACAGCAGCAGTATCACAATACCTGACTCTCCTCAG
AGGTATCGGGATAAACGCACCACGTGGGAGCGGCATCGCAACAAGTTACC
TTGGTGTGGGCTCTTCGTGTTATTGGCTTTACTCGTCGGCGTTGCCCTCG
CCGTCTTCTACCCTAAGAGGCCGCAGGTGTCGCTATTTACCTCAAGCGTT
CTGGAAATCGACGGCTTTGTTGGGGCCAGAGCCAATTTTGTCGTAAAAAT
CGATAATCCGAATTACTTCGCGTTCAATGTGGACGACGTGGTTGCCGAAG
TTTCCGGGTACGACGGCAAGCAAATCGGCACCCTCCTCCGACCGGAACAT
TTTCAAGTCGATAGAAGGACGACATCCTTTATGCCAGCCACGGGAATATT
CCAAAACAACCTGCTACAAGTGGGTTTAATTGGAATGGACTGCATGAACA
ATAGGGGCATGACACTCATACATATCAATGCAGCGGCGAACGTGAGAATT
CTGGGGAGGAATCGTCGGGTTTCAATGATCATCACTGAGCCCGTGGCCTG
CGCCGTCAGAAACGTGGCTGGTAGCAATAATGGAATGGTGGTGGTAATCA
GGGTGATGGCAATCAAGCCAGTGGTGGCAATCAAGCTGGTGGTGCAGGTA
ACCAGGCCGGCGTGGGCGACCAACCTGCTGGTGCTGGTAGTCAGGCGGGT
GGTGCCAATCAGGCCGGTACGGGTAATCAGGCTGGTGGTGCTGGGTATAA
ACCTGGTGCTGGCAACCAAGCGGAAGGTGGTAACCAGGCTAGTGATGCTG
GTGGTGGTCAGGCCGGTGCTGGCAACCAAGCCGGTGGTAGCAATCAGGCT
TGGGGTGGTGGCGCTAATCAAGCTTGGGGTGGTGGTGGTCAGGCTGGTGC
TGGCGACCAAGCCGGTGGTGGTAGTCAGGCTGGTGCTGGTAGTGCTGCGG
GTGGTGGTTTAA
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protein sequence of NO07G02830.1

>NO07G02830.1-protein ID=NO07G02830.1-protein|Name=NO07G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MPYHEQSIRDVRAEWYDEDMDFEPNRVKVKTVNPLELAHSSSITIPDSPQ
RYRDKRTTWERHRNKLPWCGLFVLLALLVGVALAVFYPKRPQVSLFTSSV
LEIDGFVGARANFVVKIDNPNYFAFNVDDVVAEVSGYDGKQIGTLLRPEH
FQVDRRTTSFMPATGIFQNNLLQVGLIGMDCMNNRGMTLIHINAAANVRI
LGRNRRVSMIITEPVACAVRNVAGSNNGMVVVIRVMAIKPVVAIKLVVQV
TRPAWATNLLVLVVRRVVPIRPVRVIRLVVLGINLVLATKRKVVTRLVML
VVVRPVLATKPVVAIRLGVVALIKLGVVVVRLVLATKPVVVVRLVLVVLR
VVV*
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mRNA from alignment at chr7:802007..803307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02830.1 ID=NO07G02830.1|Name=NO07G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at chr7:802007..803307- (Nannochloropsis oceanica)
ATGCCATATCACGAACAAAGCATACGAGATGTCAGGGCTGAGTGGTACGA
TGAAGACATGGACTTTGAGCCAAACAGGGTCAAGGTCAAGACCGTGAATC
CATTGGAGCTGGCGCACAGCAGCAGTATCACAATACCTGACTCTCCTCAG
AGGTATCGGGATAAACGCACCACGTGGGAGCGGCATCGCAACAAGTTACC
TTGGTGTGGGCTCTTCGTGTTATTGGCTTTACTCGTCGGCGTTGCCCTCG
CCGTCTTCTACCCTAAGAGGCCGCAGGTGTCGCTATTTACCTCAAGCGTT
CTGGAAATCGACGGCTTTGTTGGTAAGGGTTGTGAAGAAGCAAGAGGAAG
AACGTGCCGCTCTACTGTAAAAAGTGAGCATACCGTAAACCGAGTCAGCT
CCTCATAATTCGTGCTTTCCATCCATACCAAACGTTACAACACCAACAGG
GGCCAGAGCCAATTTTGTCGTAAAAATCGATAATCCGAATTACTTCGCGT
TCAATGTGGACGACGTGGTTGCCGAAGTTTCCGGGTACGACGGCAAGCAA
ATCGGCACCCTCCTCCGACCGGAACATTTTCAAGTCGATAGAAGGACGAC
ATCCTTTATGCCAGCCACGGGAATATTCCAAAACAACCTGCTACAAGTGG
GTTTAATTGGAATGGACTGCATGAACAATAGGGGCATGACACTCATACAT
ATCAATGCAGCGGCGAACGTGAGAATTCTGGGGAGGAATCGTCGGGTTTC
AATGATCATCACTGAGCCCGTGGCCTGCGCCGTCAGAAACGTGGCTGGTA
GCAATAATGGAAGTATGGTTGACGGCAATGATCGAAATATGATTGATGAC
GATAGTACACCGGGCCGTTGGAGACCCTCGCCTATTGATCCTTCTTCGCC
TGTGCGCCAAGGCAATGATCTAAGTGGTGGTGGTAATCAGGGTGATGGCA
ATCAAGCCAGTGGTGGCAATCAAGCTGGTGGTGCAGGTAACCAGGCCGGC
GTGGGCGACCAACCTGCTGGTGCTGGTAGTCAGGCGGGTGGTGCCAATCA
GGCCGGTACGGGTAATCAGGCTGGTGGTGCTGGGTATAAACCTGGTGCTG
GCAACCAAGCGGAAGGTGGTAACCAGGCTAGTGATGCTGGTGGTGGTCAG
GCCGGTGCTGGCAACCAAGCCGGTGGTAGCAATCAGGCTTGGGGTGGTGG
CGCTAATCAAGCTTGGGGTGGTGGTGGTCAGGCTGGTGCTGGCGACCAAG
CCGGTGGTGGTAGTCAGGCTGGTGCTGGTAGTGCTGCGGGTGGTGGTTTA
A
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Coding sequence (CDS) from alignment at chr7:802007..803307-

>NO07G02830.1 ID=NO07G02830.1|Name=NO07G02830.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr7:802007..803307- (Nannochloropsis oceanica)
ATGCCATATCACGAACAAAGCATACGAGATGTCAGGGCTGAGTGGTACGA
TGAAGACATGGACTTTGAGCCAAACAGGGTCAAGGTCAAGACCGTGAATC
CATTGGAGCTGGCGCACAGCAGCAGTATCACAATACCTGACTCTCCTCAG
AGGTATCGGGATAAACGCACCACGTGGGAGCGGCATCGCAACAAGTTACC
TTGGTGTGGGCTCTTCGTGTTATTGGCTTTACTCGTCGGCGTTGCCCTCG
CCGTCTTCTACCCTAAGAGGCCGCAGGTGTCGCTATTTACCTCAAGCGTT
CTGGAAATCGACGGCTTTGTTGGGGCCAGAGCCAATTTTGTCGTAAAAAT
CGATAATCCGAATTACTTCGCGTTCAATGTGGACGACGTGGTTGCCGAAG
TTTCCGGGTACGACGGCAAGCAAATCGGCACCCTCCTCCGACCGGAACAT
TTTCAAGTCGATAGAAGGACGACATCCTTTATGCCAGCCACGGGAATATT
CCAAAACAACCTGCTACAAGTGGGTTTAATTGGAATGGACTGCATGAACA
ATAGGGGCATGACACTCATACATATCAATGCAGCGGCGAACGTGAGAATT
CTGGGGAGGAATCGTCGGGTTTCAATGATCATCACTGAGCCCGTGGCCTG
CGCCGTCAGAAACGTGGCTGGTAGCAATAATGGAATGGTGGTGGTAATCA
GGGTGATGGCAATCAAGCCAGTGGTGGCAATCAAGCTGGTGGTGCAGGTA
ACCAGGCCGGCGTGGGCGACCAACCTGCTGGTGCTGGTAGTCAGGCGGGT
GGTGCCAATCAGGCCGGTACGGGTAATCAGGCTGGTGGTGCTGGGTATAA
ACCTGGTGCTGGCAACCAAGCGGAAGGTGGTAACCAGGCTAGTGATGCTG
GTGGTGGTCAGGCCGGTGCTGGCAACCAAGCCGGTGGTAGCAATCAGGCT
TGGGGTGGTGGCGCTAATCAAGCTTGGGGTGGTGGTGGTCAGGCTGGTGC
TGGCGACCAAGCCGGTGGTGGTAGTCAGGCTGGTGCTGGTAGTGCTGCGG
GTGGTGGTTTAA
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Synonyms
Publications