NO07G02620, NO07G02620 (gene) Nannochloropsis oceanica

Overview
NameNO07G02620
Unique NameNO07G02620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1875
Alignment locationchr7:755659..757533 -

Link to JBrowse

Properties
Property NameValue
DescriptionRna polymerase-associated protein ctr9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:755659..757533 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0016570histone modification
GO:0016043cellular component organization
GO:0009058biosynthetic process
GO:0006464cellular protein modification process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR031101Ctr9
IPR019734TPR_repeat
Homology
BLAST of NO07G02620 vs. NCBI_GenBank
Match: XP_005855148.1 (ctr9 protein, partial [Nannochloropsis gaditana CCMP526] >EKU21209.1 ctr9 protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 511.9 bits (1317), Expect = 2.800e-141
Identity = 257/332 (77.41%), Postives = 292/332 (87.95%), Query Frame = 0
Query:    1 MGEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKEGDPYAMVALGNLYFMNSITVPDKAHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAADGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLVLDASVSEAFKRANALVTTSVEESRGAQRDLLVAIDMLSRSELASTYAKVKKKVDYLKANQSLARQYVQAEGKRFREDEENKARQ 333
            MGE +AAEEL LAI+KQYPS+ +A++KLG+LA  QG   +A  WLG+AR LAPQD+EVAA+CGKVEQD G RDQAQRLFEPLNKEGDPYAMVALGNLYFMNS+TVPDKAHH+GHARVYHTKVLKK+ +NLYAAHGLGLVLAEEFGKV+DARAVLQAVRERSGDKPDEILINI H+FVAQ QR+AAIHCYE+FLKK  L+ DGL+VRVLE+++HAHFL R WEKALRAI K  H+EP K +LAFNVGL+LDASVSE+FKR+NA  TTSV ESR A+RDL VAI +LSR ELA  Y KVK+KVDY+KAN  LARQYVQAE KRFREDEE++ RQ
Sbjct:  405 MGELAAAEELLLAITKQYPSHVSAHIKLGILAHGQGHTKQAGSWLGRARQLAPQDKEVAAVCGKVEQDAGHRDQAQRLFEPLNKEGDPYAMVALGNLYFMNSVTVPDKAHHMGHARVYHTKVLKKDARNLYAAHGLGLVLAEEFGKVEDARAVLQAVRERSGDKPDEILINIAHLFVAQKQRNAAIHCYESFLKKHRLSTDGLHVRVLEYVSHAHFLERSWEKALRAILKALHVEPGKPALAFNVGLILDASVSESFKRSNAQRTTSVSESRSAERDLSVAISVLSRPELAQAYPKVKRKVDYMKANLQLARQYVQAEEKRFREDEESRTRQ 736          
BLAST of NO07G02620 vs. NCBI_GenBank
Match: EWM27070.1 (rna polymerase-associated protein ctr9 [Nannochloropsis gaditana])

HSP 1 Score: 511.9 bits (1317), Expect = 2.800e-141
Identity = 257/332 (77.41%), Postives = 292/332 (87.95%), Query Frame = 0
Query:    1 MGEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKEGDPYAMVALGNLYFMNSITVPDKAHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAADGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLVLDASVSEAFKRANALVTTSVEESRGAQRDLLVAIDMLSRSELASTYAKVKKKVDYLKANQSLARQYVQAEGKRFREDEENKARQ 333
            MGE +AAEEL LAI+KQYPS+ +A++KLG+LA  QG   +A  WLG+AR LAPQD+EVAA+CGKVEQD G RDQAQRLFEPLNKEGDPYAMVALGNLYFMNS+TVPDKAHH+GHARVYHTKVLKK+ +NLYAAHGLGLVLAEEFGKV+DARAVLQAVRERSGDKPDEILINI H+FVAQ QR+AAIHCYE+FLKK  L+ DGL+VRVLE+++HAHFL R WEKALRAI K  H+EP K +LAFNVGL+LDASVSE+FKR+NA  TTSV ESR A+RDL VAI +LSR ELA  Y KVK+KVDY+KAN  LARQYVQAE KRFREDEE++ RQ
Sbjct:  784 MGELAAAEELLLAITKQYPSHVSAHIKLGILAHGQGHTKQAGSWLGRARQLAPQDKEVAAVCGKVEQDAGHRDQAQRLFEPLNKEGDPYAMVALGNLYFMNSVTVPDKAHHMGHARVYHTKVLKKDARNLYAAHGLGLVLAEEFGKVEDARAVLQAVRERSGDKPDEILINIAHLFVAQKQRNAAIHCYESFLKKHRLSTDGLHVRVLEYVSHAHFLERSWEKALRAILKALHVEPGKPALAFNVGLILDASVSESFKRSNAQRTTSVSESRSAERDLSVAISVLSRPELAQAYPKVKRKVDYMKANLQLARQYVQAEEKRFREDEESRTRQ 1115          
BLAST of NO07G02620 vs. NCBI_GenBank
Match: CBJ49050.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 141.4 bits (355), Expect = 9.800e-30
Identity = 88/290 (30.34%), Postives = 151/290 (52.07%), Query Frame = 0
Query:    2 GEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPL----NKEGDPYAMVALGNLYFMNSITVPDKAHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAAD-GLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLVLDASVSEAFKRANALVTTSVEESRGAQRDLLVAIDMLS 287
            G   AA+EL+ A+  ++P+Y  +Y++LG++A+  G+  EA  W  +A  +  ++  + A  G +         AQ+ FE +       GD YA ++LGN+YF N         H+ HA  ++ +VLKK+  N ++A+GLG+VLAE+ G +D A+ V   VRE S +   ++ IN+ H+++AQ + + AI  Y+  LKK     D  L++    ++AHA+F  R +   +R + K  H+ P    L +N+ L  +       ++       ++ E   A  DL  A  + S
Sbjct:  714 GHHEAAQELHKAVLAEHPTYVNSYLRLGIMARDSGQIHEASKWFKQALEVDGENPNIVAYIGNLHMRNSEWGPAQKKFEKILEMPGLRGDSYANLSLGNIYFSNLEDRTKYEKHLLHAANFYHEVLKKDDANAFSANGLGMVLAEK-GTLDHAKDVFARVREVSAEVLGDVWINLAHVYLAQNKHNEAIRLYQNCLKKFHGGRDPSLHI----YLAHAYFDARQYNDCMRVLLKALHVSPNNLQLWYNLALARETFAVAVLQKEQKGEARTLAEVENAIEDLKGATKLFS 998          
BLAST of NO07G02620 vs. NCBI_GenBank
Match: GAA52741.1 (RNA polymerase-associated protein CTR9 homolog [Clonorchis sinensis])

HSP 1 Score: 131.0 bits (328), Expect = 1.300e-26
Identity = 85/255 (33.33%), Postives = 140/255 (54.90%), Query Frame = 0
Query:    2 GEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKE----GDPYAMVALGNLYFM---NSITVPDK-AHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAADGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLV 249
            G    AEE+Y +I  Q+PSY   Y++LG +A+ +G   +A +W   A  + P   +V ++ G +       +QAQ+ F+ + ++     D +A ++LGN++     + I   DK   H   A  ++  VL  +P+N++AAHG+G VLA + G V++AR V   VRE + D PD + INI H++V Q Q +AAI  YE  LKK  +  +     +L+++A A+F     ++    + K  H++P    L FN+ LV
Sbjct:  564 GRPDLAEEIYKSILLQHPSYIDCYLRLGCIARDRGMIWDASIWFKDALDIDPDHPDVWSLIGLLHLSKNEAEQAQKKFDRIIRQPTYRADAFARISLGNIWLTTLHHPIRDKDKRKRHQDRALSFYKAVLCADPRNIWAAHGIGCVLAHK-GFVNEARDVFAQVREATADFPD-VWINIAHIYVEQKQYTAAIQMYENCLKKFSMQNN---TELLQYLARAYFKAGQLKECKTMLLKAMHVKPWDQLLTFNLALV 813          
BLAST of NO07G02620 vs. NCBI_GenBank
Match: XP_009174146.1 (hypothetical protein T265_09719 [Opisthorchis viverrini] >KER22100.1 hypothetical protein T265_09719 [Opisthorchis viverrini])

HSP 1 Score: 131.0 bits (328), Expect = 1.300e-26
Identity = 85/255 (33.33%), Postives = 140/255 (54.90%), Query Frame = 0
Query:    2 GEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKE----GDPYAMVALGNLYFM---NSITVPDK-AHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAADGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLV 249
            G    AEE+Y +I  Q+PSY   Y++LG +A+ +G   +A +W   A  + P   +V ++ G +       +QAQ+ F+ + ++     D +A ++LGN++     + I   DK   H   A  ++  VL  +P+N++AAHG+G VLA + G V++AR V   VRE + D PD + INI H++V Q Q +AAI  YE  LKK  +  +     +L+++A A+F     ++    + K  H++P    L FN+ LV
Sbjct:  564 GRPDLAEEIYKSILLQHPSYIDCYLRLGCIARDRGMIWDASIWFKDALDIDPDHPDVWSLIGLLHLSKNEAEQAQKKFDRIIRQPTYRADAFARISLGNIWLTTLHHPIRDKDKRKRHQDRALSFYKAVLCADPRNIWAAHGIGCVLAHK-GFVNEARDVFAQVREATADFPD-VWINIAHIYVEQKQYTAAIQMYENCLKKFSMQNN---TELLQYLARAYFKAGQLKECKTMLLKAMHVKPWDQLLTFNLALV 813          
BLAST of NO07G02620 vs. NCBI_GenBank
Match: OON18788.1 (tetratricopeptide repeat protein, partial [Opisthorchis viverrini])

HSP 1 Score: 131.0 bits (328), Expect = 1.300e-26
Identity = 85/255 (33.33%), Postives = 140/255 (54.90%), Query Frame = 0
Query:    2 GEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKE----GDPYAMVALGNLYFM---NSITVPDK-AHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAADGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLV 249
            G    AEE+Y +I  Q+PSY   Y++LG +A+ +G   +A +W   A  + P   +V ++ G +       +QAQ+ F+ + ++     D +A ++LGN++     + I   DK   H   A  ++  VL  +P+N++AAHG+G VLA + G V++AR V   VRE + D PD + INI H++V Q Q +AAI  YE  LKK  +  +     +L+++A A+F     ++    + K  H++P    L FN+ LV
Sbjct:  531 GRPDLAEEIYKSILLQHPSYIDCYLRLGCIARDRGMIWDASIWFKDALDIDPDHPDVWSLIGLLHLSKNEAEQAQKKFDRIIRQPTYRADAFARISLGNIWLTTLHHPIRDKDKRKRHQDRALSFYKAVLCADPRNIWAAHGIGCVLAHK-GFVNEARDVFAQVREATADFPD-VWINIAHIYVEQKQYTAAIQMYENCLKKFSMQNN---TELLQYLARAYFKAGQLKECKTMLLKAMHVKPWDQLLTFNLALV 780          
BLAST of NO07G02620 vs. NCBI_GenBank
Match: XP_002287483.1 (hypothetical protein THAPSDRAFT_268346 [Thalassiosira pseudonana CCMP1335] >EED94926.1 hypothetical protein THAPSDRAFT_268346 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 130.2 bits (326), Expect = 2.300e-26
Identity = 79/219 (36.07%), Postives = 128/219 (58.45%), Query Frame = 0
Query:    2 GEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKEGDP----YAMVALGNLYFMNSITVPDKAHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAADGLYVRVLEFMAHAHF 217
            G    A EL+ AI K++PSY  +Y++L  +A+  G   +   WL  A ++AP + EV  + G +   L     AQ++F+ L  +  P    Y+M++LGN+YF N  T    + H+ HA  ++ ++L K+  N YAA+GLG VLAE  G++  A+ V   VRE SGD   + L+N+GH+++AQ + S A+  Y++++  R  A+D     VL ++A A+F
Sbjct:  388 GRIVPAVELHKAIVKRHPSYVNSYLRLACIARDCGSLKDCSEWLKSAVAVAPGNPEVLTLVGNLHLSLCDWAPAQKVFDQLLIQKVPKVEAYSMLSLGNIYFNNLNTPKKYSKHLQHAADFYRRILSKDNANAYAANGLGTVLAER-GELFKAKEVFNRVREVSGDTILDCLLNLGHIYLAQKKHSEALQMYQSYM-NRTRASDDDEAEVLLYIAFAYF 604          
BLAST of NO07G02620 vs. NCBI_GenBank
Match: XP_012751949.1 (hypothetical protein SAMD00019534_080350 [Acytostelium subglobosum LB1] >GAM24860.1 hypothetical protein SAMD00019534_080350 [Acytostelium subglobosum LB1])

HSP 1 Score: 125.6 bits (314), Expect = 5.600e-25
Identity = 77/253 (30.43%), Postives = 135/253 (53.36%), Query Frame = 0
Query:    1 MGEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPL--NKEGDPYAMVALGNLYFMNSITVPDK-AHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAADGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLVLD 251
            M  F+ A EL++ I  ++P+Y   Y+++  L +++G   EA  W  +A  + P + E  ++ G ++    +   AQ  FE +    + DPYA +ALGNLYF   I  PDK   ++  A  Y+TK LK  P N+YAA+G+G+V A E G +  A  +   +RE + D P  + +N+ H+++ +     AI  Y+  LKK   A +   + +  ++A A+F  + + +  + + K  H+ P   +L +N  L ++
Sbjct:  528 MNNFTRARELHIGILTEHPTYLDCYLRMSALCRAEGNDFEASEWSKQALLIDPNNAEAWSMFGCLQLSKEQWSFAQNKFEQILETNKHDPYASLALGNLYFQAKIHNPDKFEKYLSLAETYYTKTLKNNPTNIYAANGIGMV-AFERGNITLATDIFVQLRESAVDVP-SVSLNLAHIYMQKRLFDFAIRLYDGCLKKSNNAKEMELMYL--YLAKAYFEAQRYPECKQTLKKALHISPANMALQYNFALAIE 776          
BLAST of NO07G02620 vs. NCBI_GenBank
Match: XP_018649142.1 (putative tpr repeat nuclear phosphoprotein [Schistosoma mansoni] >CCD76269.1 putative tpr repeat nuclear phosphoprotein [Schistosoma mansoni])

HSP 1 Score: 124.0 bits (310), Expect = 1.600e-24
Identity = 81/255 (31.76%), Postives = 137/255 (53.73%), Query Frame = 0
Query:    2 GEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKE----GDPYAMVALGNLYFM---NSITVPDK-AHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAADGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLV 249
            G    AEE+Y +I  ++PSY   Y++LG +A+ +G+  +A +W  +A  +   + +   + G +       +QAQ+ F+ + ++     D +A + LGN++     + I   DK   H   A  ++  VL  +P+N++AAHG+G VLA + G V++AR V   VRE + D PD + INI H++V Q Q +AAI  YE  +KK     +     +L+++A AHF     ++    + K  H++P    L FN+  V
Sbjct:  534 GRSDLAEEIYKSILLRHPSYIECYLRLGCIARDRGQIRDASIWFKEALDVDQDNPDAWTLIGLLHLGKNEVEQAQKKFDRIIRQPAYRADAFARICLGNIWLTTLHHPIKDKDKRKRHQDRALSFYKAVLCADPRNIWAAHGIGCVLAHK-GFVNEARDVFAQVREATADFPD-VWINIAHIYVEQKQYTAAIQMYENCIKKFSRQNN---TELLQYLARAHFKAGQLKECKTMLLKARHVKPWDPVLTFNLAFV 783          
BLAST of NO07G02620 vs. NCBI_GenBank
Match: XP_014147891.1 (hypothetical protein SARC_13453, partial [Sphaeroforma arctica JP610] >KNC73989.1 hypothetical protein SARC_13453, partial [Sphaeroforma arctica JP610])

HSP 1 Score: 121.7 bits (304), Expect = 8.000e-24
Identity = 91/319 (28.53%), Postives = 152/319 (47.65%), Query Frame = 0
Query:    2 GEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKEG-------DPYAMVALGNLYFMNSIT--------VPDKAHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIH----CYEAFLKKRPLAADGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLVLDASVSEAFKRANALVTTSVEESRGAQRDLLVAIDMLSRSELASTYAKVKKKV 302
            GE + AE +Y  + K +P+Y  +Y++LG + + QGR  +A  W  +A S+   D    ++ G +    G    AQ++FE +NK+        D YA VALG+L+  ++ T            A ++  A+  + K LK + +N+YAA+G+G VLAE  G V++AR +   VRE +GD P  I  N+ H  + Q Q   AI     C   F   R +    +Y+ +    A A+FL   +  A + + K  H+ PT +   +N+GL          K   +  T  +   R A+    +   +   ++  + Y+K   K+
Sbjct:   19 GERATAEAMYKQLVKDHPTYIESYLRLGCMLRDQGRKNKASDWFKEALSVDVSDYRTRSLLGNLHLSKGEIIPAQKMFESINKDSKEKTKREDMYAQVALGSLFHQSASTAKRNDPKGAQKHADYLRRAQDLYAKALKLDGRNMYAANGIGCVLAER-GHVNEARQIFVQVREATGDMP-FIWDNLAHTNLQQKQYVNAIKMLKTCQARFFGGRDV---DVYISI----ARAYFLSNDFAMAAKTLRKALHITPTDSETEYNIGLCEQKVAVAVLKDTKSDTTQLLMAKRSAKMAERIFTMLAQSNDKHTKYSKTLAKM 328          
The following BLAST results are available for this feature:
BLAST of NO07G02620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005855148.12.800e-14177.41ctr9 protein, partial [Nannochloropsis gaditana CC... [more]
EWM27070.12.800e-14177.41rna polymerase-associated protein ctr9 [Nannochlor... [more]
CBJ49050.19.800e-3030.34conserved unknown protein [Ectocarpus siliculosus][more]
GAA52741.11.300e-2633.33RNA polymerase-associated protein CTR9 homolog [Cl... [more]
XP_009174146.11.300e-2633.33hypothetical protein T265_09719 [Opisthorchis vive... [more]
OON18788.11.300e-2633.33tetratricopeptide repeat protein, partial [Opistho... [more]
XP_002287483.12.300e-2636.07hypothetical protein THAPSDRAFT_268346 [Thalassios... [more]
XP_012751949.15.600e-2530.43hypothetical protein SAMD00019534_080350 [Acytoste... [more]
XP_018649142.11.600e-2431.76putative tpr repeat nuclear phosphoprotein [Schist... [more]
XP_014147891.18.000e-2428.53hypothetical protein SARC_13453, partial [Sphaerof... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000566NSK000566Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02620.1NO07G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580855gene_2594Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100194g15gene3469Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02620.1NO07G02620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02620 ID=NO07G02620|Name=NO07G02620|organism=Nannochloropsis oceanica|type=gene|length=1875bp
ATGGGTGAATTCAGTGCCGCCGAAGAACTTTACCTCGCGATAAGCAAGCA
GTATCCTTCTTACGCAGCTGCGTATGTCAAGCTGGGACTATTAGCTCAGA
GTCAAGGGAGGGGGCCTGAGGCTTTAATGTGGTTGGGCAAGGCCAGGTCG
CTGGCGCCACAAGATAGGGAGGTGGCGGCGATTTGTGGGAAGGTGGAGCA
GGACTTGGGGAGGAGGGATCAGGCGCAGCGGTTGTTTGAGCCCCTGAATA
AGGAGGGGGATCCGTACGCGATGGTGGCCTTGGGGAATTTGTATTTTATG
AATTCGATTACAGTCCCTGATAAGGCGCATCATATTGGGCATGCCCGCGT
TTATCACACTAAAGTGTTGAAAAAAGAGCCAAAGAACCTGTACGCGGCGC
ATGGGCTGGGACTGGTCTTGGCAGAGGAGTTTGGAAAGGTGGATGATGCG
CGGGCGGTGTTGCAGGCGGTGCGGGAGAGGTCAGGAGATAAACCAGATGA
GATTTTGATTAATATTGGGCACATGTTTGTGGCGCAGGGGCAACGCAGCG
CAGCTATTCATTGCTACGAGGCTTTTTTGAAGAAGCGGCCTCTAGCGGCG
GACGGATTGTATGTGAGAGTGTTGGAGTTCATGGCGCACGCGCATTTTCT
TGGGAGGGGTTGGGAGAAGGCATTGAGGGCTATTGCAAAGGGGTTTCATT
TGGAACCTACCAAAGCGTCCCTTGCTTTCAATGTGGGGTTGGTATTAGAT
GCATCGGTATCGGAGGCATTCAAGCGGGCGAATGCGTTGGTGACGACGTC
GGTGGAGGAATCGAGGGGGGCGCAGAGAGATTTATTGGTGGCCATTGATA
TGCTCTCGCGGTCGGAGTTGGCGTCAACGTATGCAAAGGTGAAGAAAAAG
GTAGATTATTTGAAGGCGAATCAATCGCTGGCGCGGCAATATGTTCAGGC
GGAGGGGAAGAGGTTTAGGGAGGATGAGGAGAACAAAGCGAGGCAGGCGG
CTTTGGTGGCGGCTGAGATGAGGAGGCGGGATGAGGTTAAAAGGGTGGAA
GAGGAAGAGAGGGAGAAAGAGAGGGAGGCGGCAAGGCACGCAGCTTTGCA
GCGGGATGAGGAGTTGAGGCGTTTAACCTCACAATGGGCACAAGAACCAA
AAGAAGCACCCAAGTCAAGCAAAAAGGGGGCAGGGAGAAAGAGTGGGGAG
ATCTTATCGGAGGGGGAGGAGGAGGAAGGGAGCGACGGGGGGGAGGGAAG
GAAGCGGCCTAAAAAGCATGTGGGAAGCGATGATGGAAATGATGATGACG
AGGATGAGGAAGGGGGAGGATCAGCGCACATTCCGCCGCAGCTGGCCAGC
AGTAGCGAGGGTAGCAGCAGCGATGACAGCTCGGACGACGAGGCTTATGG
GGTACGGCCCGCCGAGCCGAGCAAGAGGAGAGAGGAGGGGAAGGAGGGGG
CTTTCGCCTCGCCAATGGAGGAAGGCGATGGTACCGGCGGCAATGGTGAC
GGCGATGGGGAGGACGGAGAAGAGTCTCGGAAGCGCAAGGGGGAGGAAGG
AGGAGGTGGCGGGCCAAAGAAGCGTCGGTTGCAGCGAGCACAGCAGAGCG
ATGATTCAGGATCGGACGAGGAAGACGAGCTCTTCGGCATTAGCAGCAAA
CCTACTCCGGCGGCTACTGCTACGTTTGAGATGCCAGCTAGTGATCCTCT
CCGGGCTGCTATGGCTCCATCCTCACCAGCGCTATCCGTGGCATTGGCGG
GCCCACCTTCTGCTGGCAGTGGCGAGGAAGGAGGGCAGGGAGCTGGAGAA
TTGATTGCCTCACCGTCTGCAGTGACGGGGCGGCGCAAGGTTATGGCTGA
CGAGGACGACGAAGGCGACGAATAA
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protein sequence of NO07G02620.1

>NO07G02620.1-protein ID=NO07G02620.1-protein|Name=NO07G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MGEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARS
LAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKEGDPYAMVALGNLYFM
NSITVPDKAHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDA
RAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAA
DGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLVLD
ASVSEAFKRANALVTTSVEESRGAQRDLLVAIDMLSRSELASTYAKVKKK
VDYLKANQSLARQYVQAEGKRFREDEENKARQAALVAAEMRRRDEVKRVE
EEEREKEREAARHAALQRDEELRRLTSQWAQEPKEAPKSSKKGAGRKSGE
ILSEGEEEEGSDGGEGRKRPKKHVGSDDGNDDDEDEEGGGSAHIPPQLAS
SSEGSSSDDSSDDEAYGVRPAEPSKRREEGKEGAFASPMEEGDGTGGNGD
GDGEDGEESRKRKGEEGGGGGPKKRRLQRAQQSDDSGSDEEDELFGISSK
PTPAATATFEMPASDPLRAAMAPSSPALSVALAGPPSAGSGEEGGQGAGE
LIASPSAVTGRRKVMADEDDEGDE*
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Synonyms
Publications