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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr7 | genome | chr7:755659..757533 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G02620.1 vs.
Match: EWM27070.1 (rna polymerase-associated protein ctr9 [Nannochloropsis gaditana]) HSP 1 Score: 679.5 bits (1752), Expect = 1.000e-191 Identity = 409/628 (65.13%), Postives = 477/628 (75.96%), Query Frame = 0
Query: 1 MGEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARSLAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKEGDPYAMVALGNLYFMNSITVPDKAHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDARAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAADGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLVLDASVSEAFKRANALVTTSVEESRGAQRDLLVAIDMLSRSELASTYAKVKKKVDYLKANQSLARQYVQAEGKRFREDEENKARQAALVAAEMRRRDEVKRVEEEEREKEREAARHAALQRDEELRRLTSQWAQEPKEAPKSSKKGAGRKSGEILSEGEEEEGSDGGEGRKRPKKHVGSDDGNDDDEDEEGGGSAHIPPQLASSSEGSSSDDSSDDEAYGVRPAEPSKRREEGKEGAFASPM-EEGDGTGGNGDGDGEDGEESRKRKGEEGGGGGPKKRRLQRAQQSDDSGSDEEDELFG----ISSKPTPAATATFEMPASDPLRAAMAPSSPALSVALAGP-PSAGSGEEGGQGAGELIASPSA-VTGRRKVMADEDDE 622
MGE +AAEEL LAI+KQYPS+ +A++KLG+LA QG +A WLG+AR LAPQD+EVAA+CGKVEQD G RDQAQRLFEPLNKEGDPYAMVALGNLYFMNS+TVPDKAHH+GHARVYHTKVLKK+ +NLYAAHGLGLVLAEEFGKV+DARAVLQAVRERSGDKPDEILINI H+FVAQ QR+AAIHCYE+FLKK L+ DGL+VRVLE+++HAHFL R WEKALRAI K H+EP K +LAFNVGL+LDASVSE+FKR+NA TTSV ESR A+RDL VAI +LSR ELA Y KVK+KVDY+KAN LARQYVQAE KRFREDEE++ RQAALVAAEMRRR+EVKR EEEERE+E+ AAR AAL+RDEELRRLT QWAQEP+EAP+ SKK RK+GEILS+GEEE GEG + E E G +LASSSE SS+DSSDDE YG+R EP + + G+E + EG G GG G+G G++ E+RKRKGE G PKKRR+QR + S+DSGSDE++ELFG S PT PA D + P+ L+ A A P P AGS GA E ASP+A +GRR+VMADE++E
Sbjct: 784 MGELAAAEELLLAITKQYPSHVSAHIKLGILAHGQGHTKQAGSWLGRARQLAPQDKEVAAVCGKVEQDAGHRDQAQRLFEPLNKEGDPYAMVALGNLYFMNSVTVPDKAHHMGHARVYHTKVLKKDARNLYAAHGLGLVLAEEFGKVEDARAVLQAVRERSGDKPDEILINIAHLFVAQKQRNAAIHCYESFLKKHRLSTDGLHVRVLEYVSHAHFLERSWEKALRAILKALHVEPGKPALAFNVGLILDASVSESFKRSNAQRTTSVSESRSAERDLSVAISVLSRPELAQAYPKVKRKVDYMKANLQLARQYVQAEEKRFREDEESRTRQAALVAAEMRRREEVKRAEEEEREREKAAARQAALERDEELRRLTLQWAQEPREAPRVSKKELARKAGEILSDGEEE-----GEGAEFA-------------EPEMQGLGPGRQVRLASSSE-ESSNDSSDDEDYGMRGVEPGQGQGGGEEAGGKGVLGPEGKGEGGKGEGGGQETGEARKRKGEGEGPLSPKKRRVQRTRASEDSGSDEDEELFGGRESAPSMPTTQVLPPLLSPAGDAASSPAVPAGATLAEAEAAPLPPAGSVP---SGASE--ASPAARSSGRRRVMADEEEE 1387
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G02620.1 ID=NO07G02620.1|Name=NO07G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp
ATGGGTGAATTCAGTGCCGCCGAAGAACTTTACCTCGCGATAAGCAAGCA
GTATCCTTCTTACGCAGCTGCGTATGTCAAGCTGGGACTATTAGCTCAGA
GTCAAGGGAGGGGGCCTGAGGCTTTAATGTGGTTGGGCAAGGCCAGGTCG
CTGGCGCCACAAGATAGGGAGGTGGCGGCGATTTGTGGGAAGGTGGAGCA
GGACTTGGGGAGGAGGGATCAGGCGCAGCGGTTGTTTGAGCCCCTGAATA
AGGAGGGGGATCCGTACGCGATGGTGGCCTTGGGGAATTTGTATTTTATG
AATTCGATTACAGTCCCTGATAAGGCGCATCATATTGGGCATGCCCGCGT
TTATCACACTAAAGTGTTGAAAAAAGAGCCAAAGAACCTGTACGCGGCGC
ATGGGCTGGGACTGGTCTTGGCAGAGGAGTTTGGAAAGGTGGATGATGCG
CGGGCGGTGTTGCAGGCGGTGCGGGAGAGGTCAGGAGATAAACCAGATGA
GATTTTGATTAATATTGGGCACATGTTTGTGGCGCAGGGGCAACGCAGCG
CAGCTATTCATTGCTACGAGGCTTTTTTGAAGAAGCGGCCTCTAGCGGCG
GACGGATTGTATGTGAGAGTGTTGGAGTTCATGGCGCACGCGCATTTTCT
TGGGAGGGGTTGGGAGAAGGCATTGAGGGCTATTGCAAAGGGGTTTCATT
TGGAACCTACCAAAGCGTCCCTTGCTTTCAATGTGGGGTTGGTATTAGAT
GCATCGGTATCGGAGGCATTCAAGCGGGCGAATGCGTTGGTGACGACGTC
GGTGGAGGAATCGAGGGGGGCGCAGAGAGATTTATTGGTGGCCATTGATA
TGCTCTCGCGGTCGGAGTTGGCGTCAACGTATGCAAAGGTGAAGAAAAAG
GTAGATTATTTGAAGGCGAATCAATCGCTGGCGCGGCAATATGTTCAGGC
GGAGGGGAAGAGGTTTAGGGAGGATGAGGAGAACAAAGCGAGGCAGGCGG
CTTTGGTGGCGGCTGAGATGAGGAGGCGGGATGAGGTTAAAAGGGTGGAA
GAGGAAGAGAGGGAGAAAGAGAGGGAGGCGGCAAGGCACGCAGCTTTGCA
GCGGGATGAGGAGTTGAGGCGTTTAACCTCACAATGGGCACAAGAACCAA
AAGAAGCACCCAAGTCAAGCAAAAAGGGGGCAGGGAGAAAGAGTGGGGAG
ATCTTATCGGAGGGGGAGGAGGAGGAAGGGAGCGACGGGGGGGAGGGAAG
GAAGCGGCCTAAAAAGCATGTGGGAAGCGATGATGGAAATGATGATGACG
AGGATGAGGAAGGGGGAGGATCAGCGCACATTCCGCCGCAGCTGGCCAGC
AGTAGCGAGGGTAGCAGCAGCGATGACAGCTCGGACGACGAGGCTTATGG
GGTACGGCCCGCCGAGCCGAGCAAGAGGAGAGAGGAGGGGAAGGAGGGGG
CTTTCGCCTCGCCAATGGAGGAAGGCGATGGTACCGGCGGCAATGGTGAC
GGCGATGGGGAGGACGGAGAAGAGTCTCGGAAGCGCAAGGGGGAGGAAGG
AGGAGGTGGCGGGCCAAAGAAGCGTCGGTTGCAGCGAGCACAGCAGAGCG
ATGATTCAGGATCGGACGAGGAAGACGAGCTCTTCGGCATTAGCAGCAAA
CCTACTCCGGCGGCTACTGCTACGTTTGAGATGCCAGCTAGTGATCCTCT
CCGGGCTGCTATGGCTCCATCCTCACCAGCGCTATCCGTGGCATTGGCGG
GCCCACCTTCTGCTGGCAGTGGCGAGGAAGGAGGGCAGGGAGCTGGAGAA
TTGATTGCCTCACCGTCTGCAGTGACGGGGCGGCGCAAGGTTATGGCTGA
CGAGGACGACGAAGGCGACGAATAA back to topprotein sequence of NO07G02620.1 >NO07G02620.1-protein ID=NO07G02620.1-protein|Name=NO07G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MGEFSAAEELYLAISKQYPSYAAAYVKLGLLAQSQGRGPEALMWLGKARS
LAPQDREVAAICGKVEQDLGRRDQAQRLFEPLNKEGDPYAMVALGNLYFM
NSITVPDKAHHIGHARVYHTKVLKKEPKNLYAAHGLGLVLAEEFGKVDDA
RAVLQAVRERSGDKPDEILINIGHMFVAQGQRSAAIHCYEAFLKKRPLAA
DGLYVRVLEFMAHAHFLGRGWEKALRAIAKGFHLEPTKASLAFNVGLVLD
ASVSEAFKRANALVTTSVEESRGAQRDLLVAIDMLSRSELASTYAKVKKK
VDYLKANQSLARQYVQAEGKRFREDEENKARQAALVAAEMRRRDEVKRVE
EEEREKEREAARHAALQRDEELRRLTSQWAQEPKEAPKSSKKGAGRKSGE
ILSEGEEEEGSDGGEGRKRPKKHVGSDDGNDDDEDEEGGGSAHIPPQLAS
SSEGSSSDDSSDDEAYGVRPAEPSKRREEGKEGAFASPMEEGDGTGGNGD
GDGEDGEESRKRKGEEGGGGGPKKRRLQRAQQSDDSGSDEEDELFGISSK
PTPAATATFEMPASDPLRAAMAPSSPALSVALAGPPSAGSGEEGGQGAGE
LIASPSAVTGRRKVMADEDDEGDE* back to topmRNA from alignment at chr7:755659..757533- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G02620.1 ID=NO07G02620.1|Name=NO07G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp|location=Sequence derived from alignment at chr7:755659..757533- (Nannochloropsis oceanica)
ATGGGTGAATTCAGTGCCGCCGAAGAACTTTACCTCGCGATAAGCAAGCA
GTATCCTTCTTACGCAGCTGCGTATGTCAAGCTGGGACTATTAGCTCAGA
GTCAAGGGAGGGGGCCTGAGGCTTTAATGTGGTTGGGCAAGGCCAGGTCG
CTGGCGCCACAAGATAGGGAGGTGGCGGCGATTTGTGGGAAGGTGGAGCA
GGACTTGGGGAGGAGGGATCAGGCGCAGCGGTTGTTTGAGCCCCTGAATA
AGGAGGGGGATCCGTACGCGATGGTGGCCTTGGGGAATTTGTATTTTATG
AATTCGATTACAGTCCCTGATAAGGCGCATCATATTGGGCATGCCCGCGT
TTATCACACTAAAGTGTTGAAAAAAGAGCCAAAGAACCTGTACGCGGCGC
ATGGGCTGGGACTGGTCTTGGCAGAGGAGTTTGGAAAGGTGGATGATGCG
CGGGCGGTGTTGCAGGCGGTGCGGGAGAGGTCAGGAGATAAACCAGATGA
GATTTTGATTAATATTGGGCACATGTTTGTGGCGCAGGGGCAACGCAGCG
CAGCTATTCATTGCTACGAGGCTTTTTTGAAGAAGCGGCCTCTAGCGGCG
GACGGATTGTATGTGAGAGTGTTGGAGTTCATGGCGCACGCGCATTTTCT
TGGGAGGGGTTGGGAGAAGGCATTGAGGGCTATTGCAAAGGGGTTTCATT
TGGAACCTACCAAAGCGTCCCTTGCTTTCAATGTGGGGTTGGTATTAGAT
GCATCGGTATCGGAGGCATTCAAGCGGGCGAATGCGTTGGTGACGACGTC
GGTGGAGGAATCGAGGGGGGCGCAGAGAGATTTATTGGTGGCCATTGATA
TGCTCTCGCGGTCGGAGTTGGCGTCAACGTATGCAAAGGTGAAGAAAAAG
GTAGATTATTTGAAGGCGAATCAATCGCTGGCGCGGCAATATGTTCAGGC
GGAGGGGAAGAGGTTTAGGGAGGATGAGGAGAACAAAGCGAGGCAGGCGG
CTTTGGTGGCGGCTGAGATGAGGAGGCGGGATGAGGTTAAAAGGGTGGAA
GAGGAAGAGAGGGAGAAAGAGAGGGAGGCGGCAAGGCACGCAGCTTTGCA
GCGGGATGAGGAGTTGAGGCGTTTAACCTCACAATGGGCACAAGAACCAA
AAGAAGCACCCAAGTCAAGCAAAAAGGGGGCAGGGAGAAAGAGTGGGGAG
ATCTTATCGGAGGGGGAGGAGGAGGAAGGGAGCGACGGGGGGGAGGGAAG
GAAGCGGCCTAAAAAGCATGTGGGAAGCGATGATGGAAATGATGATGACG
AGGATGAGGAAGGGGGAGGATCAGCGCACATTCCGCCGCAGCTGGCCAGC
AGTAGCGAGGGTAGCAGCAGCGATGACAGCTCGGACGACGAGGCTTATGG
GGTACGGCCCGCCGAGCCGAGCAAGAGGAGAGAGGAGGGGAAGGAGGGGG
CTTTCGCCTCGCCAATGGAGGAAGGCGATGGTACCGGCGGCAATGGTGAC
GGCGATGGGGAGGACGGAGAAGAGTCTCGGAAGCGCAAGGGGGAGGAAGG
AGGAGGTGGCGGGCCAAAGAAGCGTCGGTTGCAGCGAGCACAGCAGAGCG
ATGATTCAGGATCGGACGAGGAAGACGAGCTCTTCGGCATTAGCAGCAAA
CCTACTCCGGCGGCTACTGCTACGTTTGAGATGCCAGCTAGTGATCCTCT
CCGGGCTGCTATGGCTCCATCCTCACCAGCGCTATCCGTGGCATTGGCGG
GCCCACCTTCTGCTGGCAGTGGCGAGGAAGGAGGGCAGGGAGCTGGAGAA
TTGATTGCCTCACCGTCTGCAGTGACGGGGCGGCGCAAGGTTATGGCTGA
CGAGGACGACGAAGGCGACGAATAA back to topCoding sequence (CDS) from alignment at chr7:755659..757533- >NO07G02620.1 ID=NO07G02620.1|Name=NO07G02620.1|organism=Nannochloropsis oceanica|type=CDS|length=1875bp|location=Sequence derived from alignment at chr7:755659..757533- (Nannochloropsis oceanica)
ATGGGTGAATTCAGTGCCGCCGAAGAACTTTACCTCGCGATAAGCAAGCA
GTATCCTTCTTACGCAGCTGCGTATGTCAAGCTGGGACTATTAGCTCAGA
GTCAAGGGAGGGGGCCTGAGGCTTTAATGTGGTTGGGCAAGGCCAGGTCG
CTGGCGCCACAAGATAGGGAGGTGGCGGCGATTTGTGGGAAGGTGGAGCA
GGACTTGGGGAGGAGGGATCAGGCGCAGCGGTTGTTTGAGCCCCTGAATA
AGGAGGGGGATCCGTACGCGATGGTGGCCTTGGGGAATTTGTATTTTATG
AATTCGATTACAGTCCCTGATAAGGCGCATCATATTGGGCATGCCCGCGT
TTATCACACTAAAGTGTTGAAAAAAGAGCCAAAGAACCTGTACGCGGCGC
ATGGGCTGGGACTGGTCTTGGCAGAGGAGTTTGGAAAGGTGGATGATGCG
CGGGCGGTGTTGCAGGCGGTGCGGGAGAGGTCAGGAGATAAACCAGATGA
GATTTTGATTAATATTGGGCACATGTTTGTGGCGCAGGGGCAACGCAGCG
CAGCTATTCATTGCTACGAGGCTTTTTTGAAGAAGCGGCCTCTAGCGGCG
GACGGATTGTATGTGAGAGTGTTGGAGTTCATGGCGCACGCGCATTTTCT
TGGGAGGGGTTGGGAGAAGGCATTGAGGGCTATTGCAAAGGGGTTTCATT
TGGAACCTACCAAAGCGTCCCTTGCTTTCAATGTGGGGTTGGTATTAGAT
GCATCGGTATCGGAGGCATTCAAGCGGGCGAATGCGTTGGTGACGACGTC
GGTGGAGGAATCGAGGGGGGCGCAGAGAGATTTATTGGTGGCCATTGATA
TGCTCTCGCGGTCGGAGTTGGCGTCAACGTATGCAAAGGTGAAGAAAAAG
GTAGATTATTTGAAGGCGAATCAATCGCTGGCGCGGCAATATGTTCAGGC
GGAGGGGAAGAGGTTTAGGGAGGATGAGGAGAACAAAGCGAGGCAGGCGG
CTTTGGTGGCGGCTGAGATGAGGAGGCGGGATGAGGTTAAAAGGGTGGAA
GAGGAAGAGAGGGAGAAAGAGAGGGAGGCGGCAAGGCACGCAGCTTTGCA
GCGGGATGAGGAGTTGAGGCGTTTAACCTCACAATGGGCACAAGAACCAA
AAGAAGCACCCAAGTCAAGCAAAAAGGGGGCAGGGAGAAAGAGTGGGGAG
ATCTTATCGGAGGGGGAGGAGGAGGAAGGGAGCGACGGGGGGGAGGGAAG
GAAGCGGCCTAAAAAGCATGTGGGAAGCGATGATGGAAATGATGATGACG
AGGATGAGGAAGGGGGAGGATCAGCGCACATTCCGCCGCAGCTGGCCAGC
AGTAGCGAGGGTAGCAGCAGCGATGACAGCTCGGACGACGAGGCTTATGG
GGTACGGCCCGCCGAGCCGAGCAAGAGGAGAGAGGAGGGGAAGGAGGGGG
CTTTCGCCTCGCCAATGGAGGAAGGCGATGGTACCGGCGGCAATGGTGAC
GGCGATGGGGAGGACGGAGAAGAGTCTCGGAAGCGCAAGGGGGAGGAAGG
AGGAGGTGGCGGGCCAAAGAAGCGTCGGTTGCAGCGAGCACAGCAGAGCG
ATGATTCAGGATCGGACGAGGAAGACGAGCTCTTCGGCATTAGCAGCAAA
CCTACTCCGGCGGCTACTGCTACGTTTGAGATGCCAGCTAGTGATCCTCT
CCGGGCTGCTATGGCTCCATCCTCACCAGCGCTATCCGTGGCATTGGCGG
GCCCACCTTCTGCTGGCAGTGGCGAGGAAGGAGGGCAGGGAGCTGGAGAA
TTGATTGCCTCACCGTCTGCAGTGACGGGGCGGCGCAAGGTTATGGCTGA
CGAGGACGACGAAGGCGACGAATAA back to top
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