NO07G02590, NO07G02590 (gene) Nannochloropsis oceanica

Overview
NameNO07G02590
Unique NameNO07G02590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length336
Alignment locationchr7:751012..751347 -

Link to JBrowse

Properties
Property NameValue
DescriptionTranscription factor e2fb
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:751012..751347 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G02590 vs. NCBI_GenBank
Match: EWM27092.1 (transcription factor e2fb [Nannochloropsis gaditana])

HSP 1 Score: 67.8 bits (164), Expect = 2.500e-8
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0 
Query:   67 GAMGGYKPSPAPSPSGATGGVMSDPVFQFGMTDEEGISEMWLEE 111
            G +  YKPSPAPSPS A+GG MSDPVFQFGMTD EGISEMWL E
Sbjct:  305 GGILAYKPSPAPSPSVASGG-MSDPVFQFGMTDAEGISEMWLTE 347
The following BLAST results are available for this feature:
BLAST of NO07G02590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27092.12.500e-879.55transcription factor e2fb [Nannochloropsis gaditan... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000599NSK000599Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02590.1NO07G02590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669165gene_2591Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100046g12gene3436Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02590.1NO07G02590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02590 ID=NO07G02590|Name=NO07G02590|organism=Nannochloropsis oceanica|type=gene|length=336bp
ATGGAGCCTCCGCCATCACCGGCCATGGCAGGAGGGAATTCGAAGGAGGC
GCACCACCACCAGCAGGAGTATCAACAACCGCAACAGCAGCAGCAGCACC
ATCACCAGCAGCATCATTCTAACCAGCTGCCGCTGCAGCAGCATGAGCTG
GGCGGGTTGAGCCACCACCACAACCAGACAGGGCCTGGGGGGATGGTGGG
CGCGATGGGTGGGTACAAGCCCTCCCCTGCGCCCTCGCCGTCGGGGGCGA
CGGGAGGGGTGATGAGCGACCCGGTCTTTCAGTTTGGGATGACGGATGAG
GAGGGAATCTCGGAGATGTGGCTTGAGGAGAGTTAG
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protein sequence of NO07G02590.1

>NO07G02590.1-protein ID=NO07G02590.1-protein|Name=NO07G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MEPPPSPAMAGGNSKEAHHHQQEYQQPQQQQQHHHQQHHSNQLPLQQHEL
GGLSHHHNQTGPGGMVGAMGGYKPSPAPSPSGATGGVMSDPVFQFGMTDE
EGISEMWLEES*
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Synonyms
Publications