NO07G02590.1, NO07G02590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G02590.1
Unique NameNO07G02590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length336
Alignment locationchr7:751012..751347 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:751012..751347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G02590.1 vs.
Match: EWM27092.1 (transcription factor e2fb [Nannochloropsis gaditana])

HSP 1 Score: 76.6 bits (187), Expect = 5.300e-11
Identity = 57/99 (57.58%), Postives = 62/99 (62.63%), Query Frame = 0 
Query:   12 GNSKEAHHHQQEYQQPQQQQQHHHQQHHSNQLPLQQHELGGLSHHHNQTGPGGMVGAMGGYKPSPAPSPSGATGGVMSDPVFQFGMTDEEGISEMWLEE 111
            G SK A H + +         H     HS    LQ HE+ GLSHHHNQ G  G + A   YKPSPAPSPS A+GG MSDPVFQFGMTD EGISEMWL E
Sbjct:  257 GRSKPAGHDEPQPASQGSYDLHSLPGAHS----LQPHEMMGLSHHHNQLGGNGGILA---YKPSPAPSPSVASGG-MSDPVFQFGMTDAEGISEMWLTE 347
The following BLAST results are available for this feature:
BLAST of NO07G02590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27092.15.300e-1157.58transcription factor e2fb [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G02590NO07G02590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G02590.1NO07G02590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G02590.1.cds1NO07G02590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G02590.1 ID=NO07G02590.1|Name=NO07G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=336bp
ATGGAGCCTCCGCCATCACCGGCCATGGCAGGAGGGAATTCGAAGGAGGC
GCACCACCACCAGCAGGAGTATCAACAACCGCAACAGCAGCAGCAGCACC
ATCACCAGCAGCATCATTCTAACCAGCTGCCGCTGCAGCAGCATGAGCTG
GGCGGGTTGAGCCACCACCACAACCAGACAGGGCCTGGGGGGATGGTGGG
CGCGATGGGTGGGTACAAGCCCTCCCCTGCGCCCTCGCCGTCGGGGGCGA
CGGGAGGGGTGATGAGCGACCCGGTCTTTCAGTTTGGGATGACGGATGAG
GAGGGAATCTCGGAGATGTGGCTTGAGGAGAGTTAG
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protein sequence of NO07G02590.1

>NO07G02590.1-protein ID=NO07G02590.1-protein|Name=NO07G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MEPPPSPAMAGGNSKEAHHHQQEYQQPQQQQQHHHQQHHSNQLPLQQHEL
GGLSHHHNQTGPGGMVGAMGGYKPSPAPSPSGATGGVMSDPVFQFGMTDE
EGISEMWLEES*
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mRNA from alignment at chr7:751012..751347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G02590.1 ID=NO07G02590.1|Name=NO07G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=336bp|location=Sequence derived from alignment at chr7:751012..751347- (Nannochloropsis oceanica)
ATGGAGCCTCCGCCATCACCGGCCATGGCAGGAGGGAATTCGAAGGAGGC
GCACCACCACCAGCAGGAGTATCAACAACCGCAACAGCAGCAGCAGCACC
ATCACCAGCAGCATCATTCTAACCAGCTGCCGCTGCAGCAGCATGAGCTG
GGCGGGTTGAGCCACCACCACAACCAGACAGGGCCTGGGGGGATGGTGGG
CGCGATGGGTGGGTACAAGCCCTCCCCTGCGCCCTCGCCGTCGGGGGCGA
CGGGAGGGGTGATGAGCGACCCGGTCTTTCAGTTTGGGATGACGGATGAG
GAGGGAATCTCGGAGATGTGGCTTGAGGAGAGTTAG
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Coding sequence (CDS) from alignment at chr7:751012..751347-

>NO07G02590.1 ID=NO07G02590.1|Name=NO07G02590.1|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at chr7:751012..751347- (Nannochloropsis oceanica)
ATGGAGCCTCCGCCATCACCGGCCATGGCAGGAGGGAATTCGAAGGAGGC
GCACCACCACCAGCAGGAGTATCAACAACCGCAACAGCAGCAGCAGCACC
ATCACCAGCAGCATCATTCTAACCAGCTGCCGCTGCAGCAGCATGAGCTG
GGCGGGTTGAGCCACCACCACAACCAGACAGGGCCTGGGGGGATGGTGGG
CGCGATGGGTGGGTACAAGCCCTCCCCTGCGCCCTCGCCGTCGGGGGCGA
CGGGAGGGGTGATGAGCGACCCGGTCTTTCAGTTTGGGATGACGGATGAG
GAGGGAATCTCGGAGATGTGGCTTGAGGAGAGTTAG
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Synonyms
Publications