NO07G01930, NO07G01930 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_024363117.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Physcomitrella patens] >PNR29597.1 hypothetical protein PHYPA_028291 [Physcomitrella patens]) HSP 1 Score: 135.2 bits (339), Expect = 3.100e-28 Identity = 79/196 (40.31%), Postives = 117/196 (59.69%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQI 273 KL +A+VC+SN NRSMEAHA G V S GTG V+LP + ++FGTPY IL++L K E Y+R LL +L+RN +K AP+R Q N + +DV+ F+ RV++ V +DL+ RE R L +I +D KD+ ++A I G++A++L QKLE +D + +I+ F + RRL++ I Sbjct: 2 KLRHAMVCASNQNRSMEAHALLQRQGL-DVSSYGTGSHVKLPGPSIREPNVYAFGTPYRSILEDLTN------KNPELYKRNGLLQMLKRNVGVKEAPQRWQDNAADGAFDVVFTFEERVFNMVIDDLENREVRLLNVALIINLDVKDNHEEAAIGGKLALDLCQKLELADAWEDEIDDIISRFERQHRRRLIYTI 190
BLAST of NO07G01930 vs. NCBI_GenBank
Match: PIA44803.1 (hypothetical protein AQUCO_01700418v1 [Aquilegia coerulea]) HSP 1 Score: 135.2 bits (339), Expect = 3.100e-28 Identity = 76/198 (38.38%), Postives = 116/198 (58.59%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 K YA+VCSSN NRSMEAH GF V S GTG V+LP + + FGTPY ++ EL K E Y+R +L +L+RNA +K AP+R Q N + T+DV++ F+ +V+D V EDL RE ++P+ VI ++ KD+ ++A + R+ ++L Q+LE +D + I+ F + R+L++ I + Sbjct: 2 KFRYAMVCSSNQNRSMEAHYLLKREGF-DVCSYGTGAHVKLPGPSLREPNVYDFGTPYKQMFDELR------RKDSELYKRNGILPMLKRNAGVKVAPQRWQLNASDGTFDVVITFEEKVFDMVIEDLHNREHVLMKPVLVINLEVKDNHEEAAVGARLTLDLCQELEATDSWEDNIDNILSMFERQNRRKLVYNISF 192
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_009614690.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Nicotiana tomentosiformis] >XP_016504840.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Nicotiana tabacum]) HSP 1 Score: 134.8 bits (338), Expect = 4.100e-28 Identity = 75/198 (37.88%), Postives = 118/198 (59.60%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 KL YA+VCSSN NRSMEAH GF V S GTG+ V+LP + + FGTPY + +L K E Y+R +L +L+RN +KTAP+R Q N + +DV++ F+ +V+D V EDL R L+P+ +I ++ KD+ ++A + GR+A+ L Q+L+ +++ +I+ F ++ R+LL+ I + Sbjct: 2 KLRYAMVCSSNQNRSMEAHCLLKREGF-DVASYGTGQHVKLPGPSIREPNVYDFGTPYKHMFDDLR------RKDPELYKRNGILPMLKRNLGVKTAPQRWQENAADGCFDVVLTFEEKVFDLVLEDLHNRNQVLLKPVLIINLEVKDNHEEAAVGGRLALLLCQELDATENWEDTIDDIINNFEKQHRRKLLYSISF 192
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_009757600.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Nicotiana sylvestris] >XP_016463834.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Nicotiana tabacum]) HSP 1 Score: 134.8 bits (338), Expect = 4.100e-28 Identity = 75/198 (37.88%), Postives = 118/198 (59.60%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 KL YA+VCSSN NRSMEAH GF V S GTG+ V+LP + + FGTPY + +L K E Y+R +L +L+RN +KTAP+R Q N + +DV++ F+ +V+D V EDL R L+P+ +I ++ KD+ ++A + GR+A+ L Q+L+ +++ +I+ F ++ R+LL+ I + Sbjct: 2 KLRYAMVCSSNQNRSMEAHCLLKREGF-DVASYGTGQHVKLPGPSIREPNVYDFGTPYKHMFDDLR------RKDPELYKRNGILPMLKRNLGVKTAPQRWQENAADGCFDVVLTFEEKVFDLVLEDLHNRNQVLLKPVLIINLEVKDNHEEAAVGGRLALLLCQELDATENWEDTIDDIISNFEKQHRRKLLYSISF 192
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_019243472.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Nicotiana attenuata] >OIT04719.1 hypothetical protein A4A49_13635 [Nicotiana attenuata]) HSP 1 Score: 134.4 bits (337), Expect = 5.300e-28 Identity = 74/198 (37.37%), Postives = 118/198 (59.60%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 KL YA+VCSSN NRSMEAH GF V S GTG+ V+LP + + FGTPY + +L K E Y+R +L +L+RN +KTAP+R Q N + +DV++ F+ +V+D V EDL R L+P+ +I ++ KD+ ++A + GR+A+ L Q+L+ +++ +I+ F ++ R+LL+ + + Sbjct: 2 KLRYAMVCSSNQNRSMEAHCLLKREGF-DVASYGTGQHVKLPGPSIREPNVYDFGTPYKHMFDDLR------RKDPELYKRNGILPMLKRNLGVKTAPQRWQENAADGCFDVVLTFEEKVFDLVLEDLHNRNQVLLKPVLIINLEVKDNHEEAAVGGRLALLLCQELDATENWEDTIDDIINNFEKQHRRKLLYSVSF 192
BLAST of NO07G01930 vs. NCBI_GenBank
Match: PIA25678.1 (hypothetical protein AQUCO_10900017v1 [Aquilegia coerulea]) HSP 1 Score: 134.4 bits (337), Expect = 5.300e-28 Identity = 77/198 (38.89%), Postives = 118/198 (59.60%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 K YA+VCSSN NRSMEAH GF V S GTG V+LP + + + FGTPY ++ EL K E Y+R +L +L+RNA +K AP+R Q N + T+DV++ F+ +V+D V EDL RE ++P+ VI ++ KD+ ++A + R+ ++L Q+LE +D + I+ TF + R+L++ I + Sbjct: 2 KFRYAMVCSSNQNRSMEAHYHLKREGF-DVCSYGTGAHVKLPGPSL--REPYDFGTPYKQMFDELR------RKDSELYKRNGILPMLKRNAGVKVAPQRWQLNASDGTFDVVITFEEKVFDMVIEDLHNREHVLMKPVLVINLEVKDNHEEAAVGARLTLDLCQELEATDSWEANIGNILSTFERQNRRKLVYSISF 190
BLAST of NO07G01930 vs. NCBI_GenBank
Match: KJE92700.1 (Ssu72 protein [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 133.7 bits (335), Expect = 9.000e-28 Identity = 74/197 (37.56%), Postives = 112/197 (56.85%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQNIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 ++ YA++CSSN NRSMEAHA GF V S G+G V+LP T + + F TPY +I EL + A FY +L +L RN +IKTAPER + + L +DVI+ + RV+D V E L+ R++R P+ +I ID KD+ ++A + + + Q +++DDL E+++ F + R LL I + Sbjct: 3 RVKYAVICSSNQNRSMEAHALLSKKGF-DVCSYGSGNNVKLPGPTPDQPNVYEFNTPYNDIYAELASKDNA------FYTGNGILSMLDRNRKIKTAPERFADAKPL-FDVIITCEERVFDQVLEVLEARDSRTFRPVHIINIDIKDNHEEATVGAALIFKMCQAFDQADDLEVKIEEVLDEFQRKHARTLLHSIAF 191
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_016564034.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X2 [Capsicum annuum] >PHT53665.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Capsicum baccatum] >PHT87806.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Capsicum annuum] >PHU23448.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Capsicum chinense]) HSP 1 Score: 133.7 bits (335), Expect = 9.000e-28 Identity = 76/198 (38.38%), Postives = 118/198 (59.60%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 KL YA+VCSSN NRSMEAH+ GF V S GTG+ V+LP + + FGTPY + +L K E Y+R +L +L+RN +K AP+R Q N + +DV++ F+ +V+D V EDL R+ L+P+ VI ++ KD+ ++A + GR A+ L Q+LE +++ +I+ F ++ R+LL+ I + Sbjct: 2 KLRYAMVCSSNQNRSMEAHSLLKREGF-DVASYGTGQHVKLPGPSIREPNVYDFGTPYKHMFDDLR------RKDIELYKRNGILPMLKRNLSVKLAPQRWQENAADGPFDVVLTFEEKVFDLVLEDLHNRDQVLLKPVLVINLEVKDNHEEAAVGGRQALILCQELEATENWEETIDDIINNFEKQHRRKLLYNISF 192
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_020693395.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Dendrobium catenatum] >PKU70556.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Dendrobium catenatum]) HSP 1 Score: 133.7 bits (335), Expect = 9.000e-28 Identity = 76/198 (38.38%), Postives = 117/198 (59.09%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 KL YA++CSSN NRSMEAH+ GF V S GTG V+LP + + FGTPY ++ EL + + Y+R +L +L+RN +KTAP+R Q N + +DV F+ +V+D V EDL R+ ++ + VI ++ KD+ ++A I ++AV+L Q+LE +D +IV F ++ R+LL+ IC+ Sbjct: 13 KLRYAMICSSNQNRSMEAHSLLKREGF-DVCSYGTGAHVKLPGPSLREPNVYEFGTPYKQMYDELR------RRDPDLYKRNGILPMLKRNYSVKTAPQRWQDNAADGYFDVAFTFEEKVFDTVIEDLNNRKHSLMKSVLVINLEVKDNHEEAAIGAKLAVDLCQELEAADFWEDSIDDIVAAFEQQHNRKLLYSICF 203
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_007508530.1 (predicted protein [Bathycoccus prasinos] >CCO20147.1 predicted protein [Bathycoccus prasinos]) HSP 1 Score: 133.3 bits (334), Expect = 1.200e-27 Identity = 78/200 (39.00%), Postives = 117/200 (58.50%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFG-TPYTEILKELEGQAQADAKLQE-FYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 K SYA+VC++NMNRSM AH A L G V S G G V++P +T + + FG Y +I K+L +L E YR+ L+D+L RN R+K PER Q N + +DV+VCF+ RV+D V D++ + A+ P VI +D +D + AV A +A+ L + +E+ +D + EI++ F EE G + L+ +CY Sbjct: 14 KKSYAMVCAANMNRSMAAHCALLEKGLLNVSSFGAGSSVKIPGSTKDDPNVYQFGKATYADIRKDL-------IRLDENAYRQKGLIDMLERNMRVKEKPERWQDNSDEKEFDVVVCFEERVFDLVLADMREKNAKG-TPCLVINLDVRDSHEDAVNAAPMALKLCEMIEKCEDWECEIDEIIDQFEEEVGIKPLYSVCY 205 The following BLAST results are available for this feature:
BLAST of NO07G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G01930 ID=NO07G01930|Name=NO07G01930|organism=Nannochloropsis oceanica|type=gene|length=1744bpback to top protein sequence of NO07G01930.1 >NO07G01930.1-protein ID=NO07G01930.1-protein|Name=NO07G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bpback to top Synonyms
Publications
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