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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:565102..566845 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01930.1 vs.
Match: EWM27177.1 (RNA polymerase II subunit A [Nannochloropsis gaditana]) HSP 1 Score: 344.4 bits (882), Expect = 3.400e-91 Identity = 197/277 (71.12%), Postives = 219/277 (79.06%), Query Frame = 0
Query: 1 MSTISKRPRHEGESHDDDEDEDEEDELSSDDEEVEQDQGDAGKNGAPVSSATS--SMPRPDSSNSLSGGGAALPAPSCSKLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQNIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICYL 276
MS+ SKRPR E +D+E +DEE ELSSD+E + D K P S S P SL+ G S KL Y+LVCSSNMNRSMEAHAAFLNAGFTKV SLGTGRMVRLPAAT EGQ+SF FGTPYT+ILKELE Q++ D +LQ+FYRRTKLLDILRRNARIKTAPERLQ I+ L YDVI+CFD+RVYDAVQEDLQ REA+DLEPICVICIDTKDDPQQAV+AGRVAV+LAQ LEES DLAT+APEIVE FM +EGRRLLFQICYL
Sbjct: 26 MSSSSKRPRDYDEEREDEEYDDEE-ELSSDEEPQHLPRKDLEKPVPPSISEAGHESTGDPGRQQSLTTG-------SNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL 294
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01930.1 ID=NO07G01930.1|Name=NO07G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1382bp CCTCTCGCTCTTTATTATATTGATATGTTTTTCCGCGCACTGTCTTGCCC CCTACACACATCCTGTCTCTACCACTCGACCACTCGCAACAGGAGACGTA GGCTGTACTACACGACCGAGGATCGCACGATGACAAGAGCAGACCACCGC AGAAGATAGCACGCGCATCCCGCGACCGGCTTAGTGTTCGCAACACTCCA CCATGACGCTGGCGGTCGGGGTGGAAGGTGGCGTATGAGCCGCCGCGCTC CATTGAGCCTCGCCGCCGCGAGTACGCGCCACCATTGCCAACCATGTTGT TAACGTCTGAATGTTCTGAGCTAGGAGGGGACAGCCTATTGTTGTGCTGT TGCTTCTGCTTTATCGTATCCAAAGATCATTCGGACGAGGCCATATTCTA ACCCTCTCCGCTAATCCCCCGTTTTACGCAGAGATCATGTCAACAATAAG CAAAAGACCACGCCACGAAGGAGAAAGCCACGATGATGACGAGGATGAGG ACGAGGAGGATGAACTGAGCAGTGATGACGAAGAAGTTGAGCAGGACCAA GGCGATGCCGGCAAGAATGGCGCCCCCGTCTCCTCCGCCACCTCATCAAT GCCACGCCCCGATAGCAGCAATAGCCTCAGTGGGGGAGGAGCTGCTTTGC CAGCACCGTCCTGTTCGAAATTGAGTTATGCCTTGGTGTGCTCGAGCAAT ATGAATCGATCTATGGAAGCCCATGCGGCCTTCTTGAACGCAGGCTTTAC TAAAGTAGTCAGTCTGGGAACTGGGAGGATGGTACGTCTGCCGGCCGCGA CCGCCGAAGGGCAAGTGTCGTTCTCATTTGGGACGCCATACACGGAAATA TTGAAGGAGCTAGAGGGACAAGCTCAGGCAGATGCGAAGCTGCAAGAGTT CTATCGACGGACCAAGTTGTTAGACATTTTGAGGAGGAACGCCAGGATTA AGACGGCACCGGAACGGTTGCAGAATATTGAAAACCTGACTTACGATGTG ATTGTATGTTTTGATATACGCGTTTATGACGCGGTGCAGGAAGATTTGCA GTGTCGGGAAGCCAGGGACTTGGAGCCGATCTGTGTCATCTGCATCGACA CCAAGGACGACCCCCAACAAGCCGTCATTGCCGGCCGCGTCGCCGTTAAC CTTGCTCAAAAACTGGAAGAAAGCGATGACCTCGCTACGGACGCCCCCGA GATAGTAGAGACATTCATGGAGGAGGAAGGAAGGCGGCTGCTCTTCCAGA TATGCTACTTGTAGTTTGAATAGCATTAGCAGCGACGGACGCGTGCTTAG ATGTGACCAGTGCACACAAGCACATCAAGAAGGTAGTCAGGCAAGCAAGT AAGGAAAAAAAAAATAATTGTTCACGCTAGCG back to topprotein sequence of NO07G01930.1 >NO07G01930.1-protein ID=NO07G01930.1-protein|Name=NO07G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp MSTISKRPRHEGESHDDDEDEDEEDELSSDDEEVEQDQGDAGKNGAPVSS ATSSMPRPDSSNSLSGGGAALPAPSCSKLSYALVCSSNMNRSMEAHAAFL NAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADA KLQEFYRRTKLLDILRRNARIKTAPERLQNIENLTYDVIVCFDIRVYDAV QEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLA TDAPEIVETFMEEEGRRLLFQICYL* back to topmRNA from alignment at chr7:565102..566845- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01930.1 ID=NO07G01930.1|Name=NO07G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1744bp|location=Sequence derived from alignment at chr7:565102..566845- (Nannochloropsis oceanica) CCTCTCGCTCTTTATTATATTGATATGTTTTTCCGCGCACTGTCTTGCCC
CCTACACACATCCTGTCTCTACCACTCGACCACTCGCAACAGGAGACGTA
GGCTGTACTACACGACCGAGGATCGCACGATGACAAGAGCAGACCACCGC
AGAAGATAGCACGCGCATCCCGCGACCGGCTTAGTGTTCGCAACACTCCA
CCATGACGCTGGCGGTCGGGGTGGAAGGTGGCGTATGAGCCGCCGCGCTC
CATTGAGCCTCGCCGCCGCGAGTACGCGCCACCATTGCCAACCATGTTGT
TAACGTCTGAATGTTCTGAGCTAGGAGGGGACAGCCTATTGTTGTGCTGT
TGCTTCTGCTTTATCGTATCCAAAGATCATTCGGACGAGGCCATATTCTA
ACCCTCTCCGCTAATCCCCCGTTTTACGCAGAGATCATGTCAACAATAAG
CAAAAGACCACGCCACGAAGGAGAAAGCCACGATGATGACGAGGATGAGG
ACGAGGAGGATGAACTGAGCAGTGATGACGAAGAAGTTGAGCAGGACCAA
GGCGATGCCGGCAAGAATGGCGCCCCCGTCTCCTCCGCCACCTCATCAAT
GCCACGCCCCGATAGCAGCAATAGCCTCAGTGGGGGAGGAGCTGCTTTGC
CAGCACCGTCCTGTTCGAAATTGAGTTATGCCTTGGTGTGCTCGAGCAAT
ATGAATCGATCTATGGAAGCCCATGCGGCCTTCTTGAACGCAGGCTTTAC
TAAAGTAGTCAGTCTGGGAACTGGGAGGATGGTACGTCTGCCGGCCGCGA
CCGCCGAAGGGCAAGTGTCGTTCTCATTTGGGACGCCATACACGGAAATA
TTGAAGGAGCTAGAGGGACAAGCTCAGGCAGATGCGAAGCTGCAAGAGTT
CTATCGACGGACCAAGTTGTTAGACATTTTGAGGAGGAACGCCAGGATTA
AGACGGCACCGGAACGGTTGCAGAATATTGAAAACCTGACTTACGATGTG
ATTGTATGTTTTGATATACGCGTTTATGACGCGGTGCAGGAAGATTTGCA
GGTGAGTGATGTTGAATGATTTTCCTCCCCATCATCCTTTCTGCTTCCAC
CCGTCCTTCATTTGGTCCTTCCTTTCTGCACCAACCTATTCTATCAACGT
CTTTTTGGATGTGACACACTCATGTATCGAAAATCATCTTACCCTTCCTC
TCCAATCTCCTTTCTCAATTCTCTCCCCAAACAGTGTCGGGAAGCCAGGG
ACTTGGAGCCGATCTGTGTCATCTGCATCGACACCAAGGACGACCCCCAA
CAAGCCGTCATTGCCGGCCGCGTCGCCGTTAACCTTGCTCAAAAAGTACG
ACTTATCTTGTAACAATGCCTTGATGTTGTGGGATGCACTCTTCCCTCCT
GCCTCCCTCCTCGAGCAGGATTTGTAGAATTACGTGATACGACACCCGCA
TCCCATGCCTTTTCCTTAACACGCTCCTTTAATTTTCTTTCCCCCACCCC
CTTCTATTCTTCATGCACACACAGCTGGAAGAAAGCGATGACCTCGCTAC
GGACGCCCCCGAGATAGTAGAGACATTCATGGAGGAGGAAGGAAGGCGGC
TGCTCTTCCAGATATGCTACTTGTAGTTTGAATAGCATTAGCAGCGACGG
ACGCGTGCTTAGATGTGACCAGTGCACACAAGCACATCAAGAAGGTAGTC
AGGCAAGCAAGTAAGGAAAAAAAAAATAATTGTTCACGCTAGCG back to topCoding sequence (CDS) from alignment at chr7:565102..566845- >NO07G01930.1 ID=NO07G01930.1|Name=NO07G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr7:565102..566845- (Nannochloropsis oceanica) ATGTCAACAATAAGCAAAAGACCACGCCACGAAGGAGAAAGCCACGATGA TGACGAGGATGAGGACGAGGAGGATGAACTGAGCAGTGATGACGAAGAAG TTGAGCAGGACCAAGGCGATGCCGGCAAGAATGGCGCCCCCGTCTCCTCC GCCACCTCATCAATGCCACGCCCCGATAGCAGCAATAGCCTCAGTGGGGG AGGAGCTGCTTTGCCAGCACCGTCCTGTTCGAAATTGAGTTATGCCTTGG TGTGCTCGAGCAATATGAATCGATCTATGGAAGCCCATGCGGCCTTCTTG AACGCAGGCTTTACTAAAGTAGTCAGTCTGGGAACTGGGAGGATGGTACG TCTGCCGGCCGCGACCGCCGAAGGGCAAGTGTCGTTCTCATTTGGGACGC CATACACGGAAATATTGAAGGAGCTAGAGGGACAAGCTCAGGCAGATGCG AAGCTGCAAGAGTTCTATCGACGGACCAAGTTGTTAGACATTTTGAGGAG GAACGCCAGGATTAAGACGGCACCGGAACGGTTGCAGAATATTGAAAACC TGACTTACGATGTGATTGTATGTTTTGATATACGCGTTTATGACGCGGTG CAGGAAGATTTGCAGTGTCGGGAAGCCAGGGACTTGGAGCCGATCTGTGT CATCTGCATCGACACCAAGGACGACCCCCAACAAGCCGTCATTGCCGGCC GCGTCGCCGTTAACCTTGCTCAAAAACTGGAAGAAAGCGATGACCTCGCT ACGGACGCCCCCGAGATAGTAGAGACATTCATGGAGGAGGAAGGAAGGCG GCTGCTCTTCCAGATATGCTACTTGTAG back to top
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