NO07G01930, NO07G01930 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G01930 vs. NCBI_GenBank
Match: EWM27177.1 (RNA polymerase II subunit A [Nannochloropsis gaditana]) HSP 1 Score: 336.7 bits (862), Expect = 7.000e-89 Identity = 171/210 (81.43%), Postives = 187/210 (89.05%), Query Frame = 0 Query: 66 GGGAALPAPSCSKLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQNIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICYL 276 G +L S KL Y+LVCSSNMNRSMEAHAAFLNAGFTKV SLGTGRMVRLPAAT EGQ+SF FGTPYT+ILKELE Q++ D +LQ+FYRRTKLLDILRRNARIKTAPERLQ I+ L YDVI+CFD+RVYDAVQEDLQ REA+DLEPICVICIDTKDDPQQAV+AGRVAV+LAQ LEES DLAT+APEIVE FM +EGRRLLFQICYL Sbjct: 85 GRQQSLTTGSNCKLRYSLVCSSNMNRSMEAHAAFLNAGFTKVASLGTGRMVRLPAATIEGQISFDFGTPYTDILKELESQSETDVRLQDFYRRTKLLDILRRNARIKTAPERLQEIQELAYDVILCFDLRVYDAVQEDLQSREAKDLEPICVICIDTKDDPQQAVLAGRVAVSLAQLLEESVDLATEAPEIVEAFMAKEGRRLLFQICYL 294
BLAST of NO07G01930 vs. NCBI_GenBank
Match: OEU15532.1 (Ssu72-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 156.0 bits (393), Expect = 1.700e-34 Identity = 98/235 (41.70%), Postives = 145/235 (61.70%), Query Frame = 0 Query: 50 SATSSMPRPDSSNSLSGGGAALPAPSCSKLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGT-PYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQNIEN---LTYDVIVCFDIRVYDAVQEDLQCRE-ARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGR----RLLFQICYL 276 SA ++PRP + L A AP S+ S+ +VCSSN+NRSMEAH NAG +V S GTG VRLP TA + FG+ PY E+ + + ++F+ R K+L + RR A +K +P+R Q++ + +DV++ F+ R+YDAV EDLQ RE PI VIC+DTKD+P +A + G+VA++L +LE + DL T+APEI++ F +E+ ++L+Q+CYL Sbjct: 3 SAYETIPRPSTPPGLP-PQEAHHAP--SRRSFGVVCSSNINRSMEAHVVLGNAGL-RVESYGTGTQVRLPGRTAMEPRIYKFGSVPYEEMYNSMTSTPED----EDFFTRNKVLHLCRRGAAVKRSPQRWQDMTSDFVSQHDVVIAFEERIYDAVVEDLQMREPTESFAPIHVICLDTKDNPHEAQLQGQVALDLCWRLEAAQDLVTEAPEILDQFEKEKMTHTPIKVLYQLCYL 229
BLAST of NO07G01930 vs. NCBI_GenBank
Match: GAX14071.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Fistulifera solaris]) HSP 1 Score: 156.0 bits (393), Expect = 1.700e-34 Identity = 101/236 (42.80%), Postives = 142/236 (60.17%), Query Frame = 0 Query: 49 SSATSSMPRPDSSNSLSGGGAALPAPSCSKLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQNIEN---LTYDVIVCFDIRVYDAVQEDLQCRE-ARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEE-SDDLATDAPEIVETFMEEEGR----RLLFQICYL 276 SS S+PRP + ++ LP SK+S+ +VCSSN+NRSMEAH NAG +V S G+G VRLP TA F FGTPY + L A DA E++ R +L + RR A +K AP R Q+ ++ V++ F+ R+YDAV EDLQ RE D +PI VIC+DTKD+PQ+A + G+VA++L +LE +D++ A EI++ F +E R+L+Q+CYL Sbjct: 5 SSGGPSLPRPVTPPGIAPLENHLPK---SKISFGVVCSSNINRSMEAHLVLGNAGL-RVESYGSGTQVRLPGKTAMEPKIFKFGTPYEHMFHNL---ALDDA---EYFSRNGVLQLCRRGAAVKRAPNRWQDTPTDVIQSHAVVIAFEERIYDAVIEDLQIREPTEDFKPIHVICLDTKDNPQEAALQGQVALDLCWRLEHAADEIDERAAEIIDEFQQERIHVTPIRILYQVCYL 230
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_002982740.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X2 [Selaginella moellendorffii] >XP_002990887.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X2 [Selaginella moellendorffii] >EFJ07931.1 hypothetical protein SELMODRAFT_185661 [Selaginella moellendorffii] >EFJ15985.1 hypothetical protein SELMODRAFT_179725 [Selaginella moellendorffii]) HSP 1 Score: 144.1 bits (362), Expect = 6.700e-31 Identity = 81/199 (40.70%), Postives = 124/199 (62.31%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESD-DLATDAPEIVETFMEEEGRRLLFQICY 275 KL +A+VC+SN NRSMEAHA G V S GTG V+LP T + FGTPYT I+++L+ K + Y+R LL +L+RNA +K AP+R Q N + +DV++ F+ RV+D V EDLQ RE + + V+ +D KD+ ++A + ++A++L +KLEES+ + + +IV F ++ RRL++ IC+ Sbjct: 2 KLRHAMVCASNQNRSMEAHALLQREGL-DVSSYGTGNQVKLPGPTIRDPNIYQFGTPYTAIIEDLKN------KDPDLYKRNGLLPMLKRNASVKDAPQRWQDNAGDGAFDVVLTFEERVFDLVNEDLQNREQTLFKTVLVVNLDVKDNHEEAAVGAKLALDLCKKLEESEKNWEDEIDDIVRRFEKQHKRRLIYTICF 193
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_011083279.1 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Sesamum indicum]) HSP 1 Score: 143.3 bits (360), Expect = 1.100e-30 Identity = 82/198 (41.41%), Postives = 119/198 (60.10%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 KL YA+VCSSN NRSMEAHA GF V S GTG+ V+LP + + FGTPY +L +L K E YRR +L +L+RN +KTAP+R Q N + T+DV++ F+ +V+D V EDL R L+P+ VI ++ KD+ ++A I GR+A+ L Q+LE ++ +++ F + R+LL+ I Y Sbjct: 2 KLRYAMVCSSNQNRSMEAHALLKREGF-DVASYGTGQHVKLPGPSLREPNVYEFGTPYKHMLDDLR------RKDPELYRRNGILPMLKRNVSVKTAPQRWQENAADGTFDVVLTFEEKVFDMVIEDLHNRNHVLLKPVLVINLEVKDNHEEAAIGGRLALQLCQELETIENWEDCVDDVIINFERQNNRKLLYSISY 192
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_005840706.1 (hypothetical protein GUITHDRAFT_64039 [Guillardia theta CCMP2712] >EKX53726.1 hypothetical protein GUITHDRAFT_64039 [Guillardia theta CCMP2712]) HSP 1 Score: 142.1 bits (357), Expect = 2.500e-30 Identity = 80/199 (40.20%), Postives = 123/199 (61.81%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQNI-ENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICYL 276 +L++A VCSSNMNRSMEAH L++GF V S GTG VRLP + + + FGTPY EIL +L+ K + YR L+ +L+RN +K APER Q++ +N DV++ ++ RV+DAV +DLQ RE+ ++ + VI ++T D ++AVIA + L + LE + DL ++ E++ F + R ++ + YL Sbjct: 7 RLNFATVCSSNMNRSMEAHKQLLHSGF-NVTSFGTGTNVRLPGPSQDKPNVYEFGTPYAEILVDLQ------RKDENLYRNNGLIAMLQRNVNVKRAPERWQDMDQNRKLDVVLTYEERVFDAVLQDLQGRESENMRAMHVINLETIDKHEEAVIAAQDTCQLCRMLESAADLESEIMEVLSKFEKNSKRSFMYSLVYL 198
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_002181147.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC47070.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 140.6 bits (353), Expect = 7.400e-30 Identity = 80/173 (46.24%), Postives = 109/173 (63.01%), Query Frame = 0 Query: 77 SKLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQNIEN---LTYDVIVCFDIRVYDAVQEDLQCRE-ARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEE 246 SKLS+ +VCSSN+NRSMEAH NAG +V S GTG VRLP TA F FGTPY E+ +++ A+ A ++ R +L + R A +K APER Q+I + +DV++ F+ R++DAV EDLQ RE D PI V+C+DTKD+P +A G VA+ L +LE+ Sbjct: 2 SKLSFGVVCSSNINRSMEAHVVLGNAGL-QVESYGTGTQVRLPGRTAMEPRIFKFGTPYEEMYQQMSSTAEDAA----YFERNGVLQLCSRGAAVKRAPERWQDISSEDAAKHDVVIAFEERIFDAVIEDLQLREPTEDFRPIHVVCLDTKDNPHEAARQGTVALRLCWQLEQ 169
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_012852702.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Erythranthe guttata] >EYU24491.1 hypothetical protein MIMGU_mgv1a014344mg [Erythranthe guttata]) HSP 1 Score: 140.2 bits (352), Expect = 9.600e-30 Identity = 78/198 (39.39%), Postives = 120/198 (60.61%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 KL +A+VCSSN NRSMEAHA GF V S GTG+ V+LP + + FGTPY + ++L K E YRR +L +L+RN +K AP+R Q N + T+DV++ F+ +V+DAV EDL R L+P+ VI ++ KD+ ++A I GR+A+ L Q++E +++ +++ F + R+L++ I Y Sbjct: 2 KLRHAMVCSSNQNRSMEAHAVLKREGF-DVASYGTGQHVKLPGPSLREPNVYDFGTPYKHMFEDLR------RKDTELYRRNGILPMLKRNLGVKLAPQRWQDNAADGTFDVVLTFEEKVFDAVIEDLHNRNHVLLKPVLVINLEVKDNHEEAAIGGRLALQLCQEIENTENWEDSVDDVIMNFERQNHRKLVYSISY 192
BLAST of NO07G01930 vs. NCBI_GenBank
Match: XP_002128154.1 (PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Ciona intestinalis] >XP_018670756.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Ciona intestinalis]) HSP 1 Score: 138.3 bits (347), Expect = 3.700e-29 Identity = 80/195 (41.03%), Postives = 118/195 (60.51%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQNIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQI 273 KLS+A+VCSSNMNRSMEAH G+ V S G+G V+LP ++A+ +SF T Y +IL +L+ Q D L Y + +L++L RN RIK P+R Q+ +DVI+ + RVYD + ED RE+ +E + VI +D +D+ ++A I V L++KLE SDDL D E+++ F E RR++ + Sbjct: 3 KLSFAVVCSSNMNRSMEAHRCMSKRGYA-VESFGSGNQVKLPGSSADRPNVYSFSTKYDDILTDLK---QKDRNL---YTQNGVLNMLDRNRRIKDRPQRFQDYVG-QFDVIITLEERVYDQIMEDFNTRESETMEAVHVINLDIQDNHEEATIGAFVVCELSKKLEGSDDLDNDIDELLQDFEERSKRRIIHSV 189
BLAST of NO07G01930 vs. NCBI_GenBank
Match: PIA25009.1 (hypothetical protein AQUCO_13300004v1 [Aquilegia coerulea]) HSP 1 Score: 137.5 bits (345), Expect = 6.200e-29 Identity = 77/198 (38.89%), Postives = 117/198 (59.09%), Query Frame = 0 Query: 78 KLSYALVCSSNMNRSMEAHAAFLNAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADAKLQEFYRRTKLLDILRRNARIKTAPERLQ-NIENLTYDVIVCFDIRVYDAVQEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKLEESDDLATDAPEIVETFMEEEGRRLLFQICY 275 K YA+VCSSN NRSMEAH GF V S GTG V+LP + + FGTPY ++ EL K E Y+R +L +L+RNA +K AP+R Q N + T+DV++ F+ +V+D V EDL RE ++P+ VI ++ KD+ ++A + R+ ++L Q+LE +D + I+ TF + R+L++ I + Sbjct: 2 KFRYAMVCSSNQNRSMEAHYLLKREGF-DVCSYGTGAHVKLPGPSLREPNVYDFGTPYKQMFDELR------RKDSELYKRNGILPMLKRNAGVKVAPQRWQLNASDGTFDVVITFEEKVFDMVIEDLHNREHVLMKPVLVINLEVKDNHEEAAVGARLTLDLCQELEATDSWEDNIDNILSTFERQNRRKLVYSISF 192 The following BLAST results are available for this feature:
BLAST of NO07G01930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G01930 ID=NO07G01930|Name=NO07G01930|organism=Nannochloropsis oceanica|type=gene|length=1744bpback to top protein sequence of NO07G01930.1 >NO07G01930.1-protein ID=NO07G01930.1-protein|Name=NO07G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bpback to top Synonyms
Publications
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