NO07G01860, NO07G01860 (gene) Nannochloropsis oceanica

Overview
NameNO07G01860
Unique NameNO07G01860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1129
Alignment locationchr7:551458..552586 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:551458..552586 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO07G01860 vs. NCBI_GenBank
Match: EWM27188.1 (hypothetical protein Naga_100010g47 [Nannochloropsis gaditana])

HSP 1 Score: 253.1 bits (645), Expect = 7.300e-64
Identity = 135/196 (68.88%), Postives = 158/196 (80.61%), Query Frame = 0
Query:    1 MSQVPWTRIREFKEEQERKKRREFEAALGRAQLQVPGQQDQQQSQGPATARAKPFQERFKESYFKERLMFGGVVGAVTGAFFGGLDAVQGIKKGEAFGVMLNTLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARDEDDWGNPATAAITTVAPLLLSATFRRNVPYAVLLIGMDVFSEATASTPSSTTSTT 197
            MSQVPWTRIREFKEEQERKKR + E+    ++ Q    Q + +SQG  T     F  RFK +YFKERL+FGGVVG+VTGAFFGGLDAVQGIKKG+AFGV+LN   +K KFS EH+GSAA +FSIFYSSYQGIKYI+KVAR E DWGNPATAA+ T+ PLL+S  FRRNVPYAVLLIGMDV S+A++S+PSS T T+
Sbjct:   36 MSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQET-EENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSIFYSSYQGIKYITKVARSECDWGNPATAALCTIPPLLISTAFRRNVPYAVLLIGMDVISDASSSSPSSGTRTS 230          
BLAST of NO07G01860 vs. NCBI_GenBank
Match: EWM27187.1 (hypothetical protein Naga_100010g47 [Nannochloropsis gaditana])

HSP 1 Score: 147.1 bits (370), Expect = 5.700e-32
Identity = 80/124 (64.52%), Postives = 95/124 (76.61%), Query Frame = 0
Query:    1 MSQVPWTRIREFKEEQERKKRREFEAALGRAQLQVPGQQDQQQSQGPATARAKPFQERFKESYFKERLMFGGVVGAVTGAFFGGLDAVQGIKKGEAFGVMLNTLPSKAKFSGEHIGSAALVFSI 125
            MSQVPWTRIREFKEEQERKKR + E+    ++ Q    Q + +SQG  T     F  RFK +YFKERL+FGGVVG+VTGAFFGGLDAVQGIKKG+AFGV+LN   +K KFS EH+GSAA +FS+
Sbjct:   36 MSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQET-EENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGGLDAVQGIKKGKAFGVVLNNFQAKVKFSAEHVGSAAAIFSM 158          
BLAST of NO07G01860 vs. NCBI_GenBank
Match: EWM27189.1 (hypothetical protein Naga_100010g47 [Nannochloropsis gaditana])

HSP 1 Score: 90.1 bits (222), Expect = 8.200e-15
Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 0
Query:    1 MSQVPWTRIREFKEEQERKKRREFEAALGRAQLQVPGQQDQQQSQGPATARAKPFQERFKESYFKERLMFGGVVGAVTGAFFGG 85
            MSQVPWTRIREFKEEQERKKR + E+    ++ Q    Q + +SQG  T     F  RFK +YFKERL+FGGVVG+VTGAFFGG
Sbjct:   36 MSQVPWTRIREFKEEQERKKRHKVESGQEASRSQRDVLQHETRSQGQET-EENSFLGRFKGTYFKERLLFGGVVGSVTGAFFGG 118          
BLAST of NO07G01860 vs. NCBI_GenBank
Match: XP_008611229.1 (hypothetical protein SDRG_07187 [Saprolegnia diclina VS20] >EQC35479.1 hypothetical protein SDRG_07187 [Saprolegnia diclina VS20])

HSP 1 Score: 75.5 bits (184), Expect = 2.100e-10
Identity = 50/146 (34.25%), Postives = 76/146 (52.05%), Query Frame = 0
Query:   42 QQSQGPA--TARAKPFQERFKESYFKERLMFGGVVGAVTGAFFGGLDAVQ--GIKKGEAFGVMLNTLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARDEDDWGNPATAAITTVAPLLLSATFRRNVPYAVLLIGMDVFSE 184
            ++S  PA  TA A P  + F  +  + +L+FGG+VG  TG  FG +DAV+    + G      + ++   A       G   ++FS F+ SYQGIK   +  R  +D+ N   AA+ + AP +     R N  YA LL+G+D+F E
Sbjct:    9 EESSAPAKKTADAAPPAKPFNYTTLRHKLVFGGLVGLSTGLTFGSVDAVRQAHTQYGRINAQAIRSISRTA-------GICGMLFSGFFFSYQGIKTTMEQLRGAEDFANVGVAALLSGAPFIRHPVMRTNAMYAALLVGLDLFHE 147          
BLAST of NO07G01860 vs. NCBI_GenBank
Match: XP_012204521.1 (hypothetical protein SPRG_20819 [Saprolegnia parasitica CBS 223.65] >XP_012211934.1 hypothetical protein SPRG_17212 [Saprolegnia parasitica CBS 223.65] >KDO17363.1 hypothetical protein SPRG_17212 [Saprolegnia parasitica CBS 223.65] >KDO24782.1 hypothetical protein SPRG_20819 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 73.9 bits (180), Expect = 6.100e-10
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 0
Query:   48 ATARAKPFQERFKESYFKERLMFGGVVGAVTGAFFGGLDAVQ--GIKKGEAFGVMLNTLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARDEDDWGNPATAAITTVAPLLLSATFRRNVPYAVLLIGMDVFSE 184
            A A A P  + F  +  + +L+FGG+VG  TG  FG +DAV+    + G      + ++   A       G   ++FS F+ SYQGIK   +  R  +D+ N   AA+ + AP +     R N  YA LL+G+D+F E
Sbjct:   19 ADAAAAPPAKPFDYTTLRHKLVFGGLVGLSTGLTFGSVDAVRQAHTQYGRINAQAMRSISRTA-------GICGMLFSGFFFSYQGIKNTMEQLRGAEDFANVGVAALLSGAPFIRHPVMRTNAMYAALLVGLDLFHE 149          
BLAST of NO07G01860 vs. NCBI_GenBank
Match: XP_002181120.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47043.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-8
Identity = 57/190 (30.00%), Postives = 91/190 (47.89%), Query Frame = 0
Query:    4 VPWTRIREFKEEQERKKRREFEAALGRAQLQVPGQQDQQQSQGP------ATARAKPFQERFKESYFKERLM----FGGVVGAVTGAFFGGLDAVQGIKKGEAFGVMLN-TLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARDEDDWGNPATAAITTVAPLLLSATFRRNVPYAVLLIGMDVFS 183
            +PW RI +     E +K R F   L R  ++    Q  + S+ P      +T  AKPF    K  Y    L+    FGG +G +TGA FG +D   G++  +   V+ N +  +K ++  +    +A +F +F+  +  +KY  KV  D  D G    A   +V  L     +R N+PYA++L+ MD F+
Sbjct:   10 IPWDRIPQTGTNLEEQKERIFR-ELQRETIEDEFLQQDRHSEQPVVTGEQSTDSAKPFTSN-KVPYSNMELLRQAAFGGCLGTITGAVFGFMD---GMRTAQESSVLQNASNVAKGRYLMQGTTRSATLFGVFFGGFHILKYGLKVTLDPGDVGEIGVAGAASVGTLFARPAWRPNIPYALMLVAMDGFN 194          
BLAST of NO07G01860 vs. NCBI_GenBank
Match: OQR98126.1 (hypothetical protein ACHHYP_09167 [Achlya hypogyna])

HSP 1 Score: 67.8 bits (164), Expect = 4.400e-8
Identity = 47/143 (32.87%), Postives = 69/143 (48.25%), Query Frame = 0
Query:   47 PATARAKPFQERFKESYFKERLMFGGVVGAVTGAFFGGLDAVQ------GIKKGEAFGVMLNTLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARDEDDWGNPATAAITTVAPLLLSATFRRNVPYAVLLIGMDVFSE 184
            P     KPF      +  + +L+FGG+VG  TG  FG +DAV+      G    +A   ++ T            G+A L+FS F+ +YQGIK   +  R  +D  N A A++    P +     R N  YA LL+G+D+F E
Sbjct:   22 PVAVPVKPFD----FTTLRHKLVFGGLVGLSTGLTFGCVDAVRSHHTQFGRVDMQAMRPIMRT-----------AGTAGLLFSGFFFAYQGIKTSMEQIRGAEDIANVAVASVVAGVPFIQHPVMRANAMYAALLVGLDLFHE 149          
BLAST of NO07G01860 vs. NCBI_GenBank
Match: XP_009524364.1 (hypothetical protein PHYSODRAFT_557589 [Phytophthora sojae] >EGZ21647.1 hypothetical protein PHYSODRAFT_557589 [Phytophthora sojae])

HSP 1 Score: 66.6 bits (161), Expect = 9.700e-8
Identity = 47/124 (37.90%), Postives = 68/124 (54.84%), Query Frame = 0
Query:   65 KERLMFGGVVGAVTGAFFGGLDAVQGIKK--GEAFGVMLNTLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARDEDDWGNPATAAITTVA---PLLLSATFRRNVPYAVLLIGMDVFSE 184
            + RL+FG +VG VTGA FGG+D  +   K  G+     L T+   A  +G         FS F+  Y GIK      R++D     A+AA++TVA   P + SA  ++N+PYAV+L+ +D F E
Sbjct:   53 RNRLIFGSLVGFVTGATFGGIDGAKLYMKQHGKLAPAALGTIARGAATTGG-------AFSGFFFMYCGIKTALATQREDD----LASAAVSTVAAGLPFVRSAIMKQNLPYAVMLVALDHFHE 165          
BLAST of NO07G01860 vs. NCBI_GenBank
Match: OQS01884.1 (hypothetical protein THRCLA_05674 [Thraustotheca clavata])

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-7
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 0
Query:   47 PATARAKPFQERFKESYFKERLMFGGVVGAVTGAFFGGLDAVQGIKKGEAFG-VMLNTLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARDEDDWGNPATAAITTVAPLLLSATFRRNVPYAVLLIGMDVFSE 184
            P    AKP    F  +  + +L+FGG+VG  TG  FG +DA++  +    FG V +  L    + +    G+  L+F+ F+ +YQGIK   +  R  +D  N   AA+ + AP L     R N  YA  LI ++VF E
Sbjct:   21 PVAVPAKP----FNYNVLRNKLVFGGLVGLSTGLTFGCVDAIR--QHHSQFGRVGIEALQPVTRTA----GTCGLLFAGFFFTYQGIKTTMEQVRGTEDAINIGAAAVLSGAPFLRHPVMRANALYAAALIALEVFHE 148          
BLAST of NO07G01860 vs. NCBI_GenBank
Match: CCA20516.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 63.5 bits (153), Expect = 8.200e-7
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 0
Query:   67 RLMFGGVVGAVTGAFFGGLDAVQGIKK-GEAFGVMLNTLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARD-EDDWGNPATAAITTVAPLLLSATFRRNVPYAVLLIGMDVF 182
            RL+FG +VG  TGA FG +D ++  +K G+      N +   A ++G         FS F+S++QG+K   +  R+   D  N   A      P L  + FR+N+PYA++L+ +D F
Sbjct:   45 RLLFGALVGFPTGAVFGAIDGIRTFQKCGKLSFHATNAIAKTAVYTGG-------CFSSFFSTFQGVKAAVEFNRNGRQDAINIGVATTAATIPFLKVSYFRKNIPYAMMLVALDYF 154          
The following BLAST results are available for this feature:
BLAST of NO07G01860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
EWM27188.17.300e-6468.88hypothetical protein Naga_100010g47 [Nannochlorops... [more]
EWM27187.15.700e-3264.52hypothetical protein Naga_100010g47 [Nannochlorops... [more]
EWM27189.18.200e-1561.90hypothetical protein Naga_100010g47 [Nannochlorops... [more]
XP_008611229.12.100e-1034.25hypothetical protein SDRG_07187 [Saprolegnia dicli... [more]
XP_012204521.16.100e-1034.06hypothetical protein SPRG_20819 [Saprolegnia paras... [more]
XP_002181120.11.100e-830.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OQR98126.14.400e-832.87hypothetical protein ACHHYP_09167 [Achlya hypogyna... [more]
XP_009524364.19.700e-837.90hypothetical protein PHYSODRAFT_557589 [Phytophtho... [more]
OQS01884.11.300e-734.06hypothetical protein THRCLA_05674 [Thraustotheca c... [more]
CCA20516.18.200e-733.33conserved hypothetical protein [Albugo laibachii N... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL095nonsL095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR135ngnoR135Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000680NSK000680Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01860.1NO07G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|330797gene_2507Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g47gene3364Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01860.1NO07G01860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01860 ID=NO07G01860|Name=NO07G01860|organism=Nannochloropsis oceanica|type=gene|length=1129bp
ACAGCGGTATATCTCTGCACATCCAATCATGTCACAAGTGCCATGGACCC
GGATACGCGAATTCAAAGAGGAGCAGGAACGGAAGAAGCGGCGGGAGTTT
GAAGCAGCCTTGGGTCGGGCGCAACTCCAGGTGCCAGGGCAACAGGACCA
GCAGCAAAGCCAGGGACCAGCAACAGCACGAGCAAAACCTTTTCAAGAGC
GCTTTAAGGAGTCGTATTTCAAAGAGCGACTGATGTTTGGGGGAGTCGTG
GGCGCCGTGACGGGCGCATTTTTTGGCGGACgtaagtgcttatgtttgtg
gtagacagatggggacgttggtgcttttgcgtgacgacttggagaaagaa
aaaggcatgtcgcaggagttcccttgactctcgaggcttccggtcggggt
ttggttcgtcacggataacgttcctcatcctcgcacacgagctttcagga
gaggttggtagaagaggacgtcaaccccggggacagacgagcaacaaatt
tgatcgcccagcgatttctcgggggtcaatgatcttactcatttccctct
ttcttcttccataatcatagTGGACGCGGTGCAGGGCATCAAGAAGGGAG
AGGCATTTGGTGTGATGCTCAACACGTTGCCCTCCAAGGCCAAGTTTTCT
GGCGAACACATAGGCAGTGCTGCCCTCGTATTTTCCATgtacgtgcatgc
gcgggtgattgtcgtcctcccgaatttgttgtgcgactgttccttgcatc
acgggttttgggattaatgcacgctttatcccgtcttactcctcatatca
tatttcctcggctttttcctccccccaattttctcctctcctttttcctc
agATTCTATTCCTCCTACCAAGGCATAAAATACATCAGTAAGGTTGCACG
AGACGAGGATGATTGGGGAAATCCGGCAACAGCTGCCATCACGACCGTCG
CCCCGTTGCTTCTTTCTGCCACATTTCGTCGCAACGTGCCTTATGCGGTC
CTCTTGATAGGCATGGATGTGTTCAGCGAAGCGACTGCATCCACGCCCTC
CTCCACCACCTCTACTACTAGTTAAGGGAGAGTGAATCTCAAGTGTAAGT
ATATTTTCCGCGAACACGAACACAAGAAG
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protein sequence of NO07G01860.1

>NO07G01860.1-protein ID=NO07G01860.1-protein|Name=NO07G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MSQVPWTRIREFKEEQERKKRREFEAALGRAQLQVPGQQDQQQSQGPATA
RAKPFQERFKESYFKERLMFGGVVGAVTGAFFGGLDAVQGIKKGEAFGVM
LNTLPSKAKFSGEHIGSAALVFSIFYSSYQGIKYISKVARDEDDWGNPAT
AAITTVAPLLLSATFRRNVPYAVLLIGMDVFSEATASTPSSTTSTTS*
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Synonyms
Publications