NO07G01260, NO07G01260 (gene) Nannochloropsis oceanica

Overview
NameNO07G01260
Unique NameNO07G01260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1886
Alignment locationchr7:398900..400785 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibonuclease H2 subunit B
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:398900..400785 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000123histone acetyltransferase complex
GO:0000123histone acetyltransferase complex
Vocabulary: Biological Process
TermDefinition
GO:0016573histone acetylation
GO:0016573histone acetylation
Vocabulary: INTERPRO
TermDefinition
IPR015418Hist_AcTrfase_NuA4_cplx
Homology
[Close]
BLAST of NO07G01260 vs. NCBI_GenBank
Match: XP_017607782.1 (PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Gossypium arboreum] >KHG16512.1 Chromatin modification-related MEAF6 [Gossypium arboreum])

HSP 1 Score: 70.5 bits (171), Expect = 8.200e-9
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:    7 SLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSV 81
            +L  RRA L+ EL NIERQ++D+E SYL +T   GNVL+G++  L S+  +TA  K  S+K   EDRLFSLSSV
Sbjct:   18 TLLSRRAKLQEELRNIERQVYDMETSYLQDTGQCGNVLKGFEGFLSSSNKNTALSKR-SRKFQPEDRLFSLSSV 90
[Close]
BLAST of NO07G01260 vs. NCBI_GenBank
Match: XP_016749969.1 (PREDICTED: chromatin modification-related protein MEAF6-like isoform X4 [Gossypium hirsutum])

HSP 1 Score: 69.7 bits (169), Expect = 1.400e-8
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:    7 SLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSV 81
            +L  RRA L+ EL NIERQ++D+E SYL +T   GNVL+G++  L S+  +TA  K  S+K   EDRLFSLSSV
Sbjct:   26 TLLSRRAKLQEELGNIERQVYDMETSYLQDTGQCGNVLKGFEGFLSSSNKNTALSKR-SRKFQPEDRLFSLSSV 98
[Close]
BLAST of NO07G01260 vs. NCBI_GenBank
Match: XP_016746720.1 (PREDICTED: chromatin modification-related protein MEAF6-like isoform X3 [Gossypium hirsutum])

HSP 1 Score: 69.7 bits (169), Expect = 1.400e-8
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:    7 SLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSV 81
            +L  RRA L+ EL NIERQ++D+E SYL +T   GNVL+G++  L S+  +TA  K  S+K   EDRLFSLSSV
Sbjct:   20 TLLSRRAKLQEELGNIERQVYDMETSYLQDTGQCGNVLKGFEGFLSSSNKNTALSKR-SRKFQPEDRLFSLSSV 92
[Close]
BLAST of NO07G01260 vs. NCBI_GenBank
Match: XP_016746722.1 (PREDICTED: chromatin modification-related protein MEAF6-like isoform X4 [Gossypium hirsutum])

HSP 1 Score: 69.7 bits (169), Expect = 1.400e-8
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:    7 SLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSV 81
            +L  RRA L+ EL NIERQ++D+E SYL +T   GNVL+G++  L S+  +TA  K  S+K   EDRLFSLSSV
Sbjct:   18 TLLSRRAKLQEELGNIERQVYDMETSYLQDTGQCGNVLKGFEGFLSSSNKNTALSKR-SRKFQPEDRLFSLSSV 90
[Close]
BLAST of NO07G01260 vs. NCBI_GenBank
Match: XP_016746724.1 (PREDICTED: chromatin modification-related protein MEAF6-like isoform X6 [Gossypium hirsutum])

HSP 1 Score: 69.7 bits (169), Expect = 1.400e-8
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:    7 SLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSV 81
            +L  RRA L+ EL NIERQ++D+E SYL +T   GNVL+G++  L S+  +TA  K  S+K   EDRLFSLSSV
Sbjct:    4 TLLSRRAKLQEELGNIERQVYDMETSYLQDTGQCGNVLKGFEGFLSSSNKNTALSKR-SRKFQPEDRLFSLSSV 76
[Close]
BLAST of NO07G01260 vs. NCBI_GenBank
Match: PPR88217.1 (hypothetical protein GOBAR_AA32478 [Gossypium barbadense])

HSP 1 Score: 69.7 bits (169), Expect = 1.400e-8
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:    7 SLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSV 81
            +L  RRA L+ EL NIERQ++D+E SYL +T   GNVL+G++  L S+  +TA  K  S+K   EDRLFSLSSV
Sbjct:   18 TLLSRRAKLQEELGNIERQVYDMETSYLQDTGQCGNVLKGFEGFLSSSNKNTALSKR-SRKFQPEDRLFSLSSV 90
[Close]
BLAST of NO07G01260 vs. NCBI_GenBank
Match: KJB11315.1 (hypothetical protein B456_001G253400 [Gossypium raimondii])

HSP 1 Score: 67.4 bits (163), Expect = 6.900e-8
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 0 
Query:    7 SLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSV 81
            +L  RRA L+ EL NIERQ++D+E SYL +    GNVL+G++  L S+  +TA  K  S+K   EDRLFSLSSV
Sbjct:    4 TLLSRRAKLQEELGNIERQVYDMETSYLQDPGQCGNVLKGFEGFLSSSNKNTALSKR-SRKFQPEDRLFSLSSV 76
[Close]
BLAST of NO07G01260 vs. NCBI_GenBank
Match: KJB11317.1 (hypothetical protein B456_001G253400 [Gossypium raimondii])

HSP 1 Score: 67.4 bits (163), Expect = 6.900e-8
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 0 
Query:    7 SLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSV 81
            +L  RRA L+ EL NIERQ++D+E SYL +    GNVL+G++  L S+  +TA  K  S+K   EDRLFSLSSV
Sbjct:   18 TLLSRRAKLQEELGNIERQVYDMETSYLQDPGQCGNVLKGFEGFLSSSNKNTALSKR-SRKFQPEDRLFSLSSV 90
[Close]
BLAST of NO07G01260 vs. NCBI_GenBank
Match: XP_012442755.1 (PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Gossypium raimondii] >KJB11318.1 hypothetical protein B456_001G253400 [Gossypium raimondii])

HSP 1 Score: 67.4 bits (163), Expect = 6.900e-8
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 0 
Query:    7 SLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSV 81
            +L  RRA L+ EL NIERQ++D+E SYL +    GNVL+G++  L S+  +TA  K  S+K   EDRLFSLSSV
Sbjct:   26 TLLSRRAKLQEELGNIERQVYDMETSYLQDPGQCGNVLKGFEGFLSSSNKNTALSKR-SRKFQPEDRLFSLSSV 98
[Close]
BLAST of NO07G01260 vs. NCBI_GenBank
Match: XP_013385181.1 (chromatin modification-related protein MEAF6 [Lingula anatina])

HSP 1 Score: 67.4 bits (163), Expect = 6.900e-8
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 0 
Query:    4 EENSLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSV 81
            E   L +RRA +   L N+ERQI+  EGSYL++T   GN++RGWD  L +T ++ +     ++K   +DRLFS SSV
Sbjct:   22 ELTELVKRRAEIAETLANLERQIYAFEGSYLEDTALYGNIIRGWDRYLTNTKNTNSKADKRNRKFKEQDRLFSKSSV 98
The following BLAST results are available for this feature:
BLAST of NO07G01260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_017607782.18.200e-954.05PREDICTED: chromatin modification-related protein ... [more]
XP_016749969.11.400e-854.05PREDICTED: chromatin modification-related protein ... [more]
XP_016746720.11.400e-854.05PREDICTED: chromatin modification-related protein ... [more]
XP_016746722.11.400e-854.05PREDICTED: chromatin modification-related protein ... [more]
XP_016746724.11.400e-854.05PREDICTED: chromatin modification-related protein ... [more]
PPR88217.11.400e-854.05hypothetical protein GOBAR_AA32478 [Gossypium barb... [more]
KJB11315.16.900e-852.70hypothetical protein B456_001G253400 [Gossypium ra... [more]
KJB11317.16.900e-852.70hypothetical protein B456_001G253400 [Gossypium ra... [more]
XP_012442755.16.900e-852.70PREDICTED: chromatin modification-related protein ... [more]
XP_013385181.16.900e-844.16chromatin modification-related protein MEAF6 [Ling... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL097nonsL097Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR137ngnoR137Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000737NSK000737Nannochloropsis salina (N. salina CCMP1776)gene


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580403gene_2447Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01260.1NO07G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G01260.2NO07G01260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G01260.3NO07G01260.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01260.1NO07G01260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G01260.2NO07G01260.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G01260.3NO07G01260.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01260 ID=NO07G01260|Name=NO07G01260|organism=Nannochloropsis oceanica|type=gene|length=1886bp
AGCAGCAGCAGCAGCAGCAGCAGCGGCCGCAGCATCAGCAGCGGCAGGGG
GGGCAAAGGCAGCAGCCGCGGGAACAGCGGTTGCGGCGGCCGTAGGACGT
GGTGGAGCGTCGGTGCCGTTCTCTTCGCCTTCTGCGACAATGGCCTCCAG
TTCTTCGTCACTGCACGGTCGTTGAAACGATTATATGAGGAGAGGAAAGG
AATGGCGCGAGGAAGGGAGGGACGGGGGCAAATGGGCTGCATCCCAACTC
ACCTCAGGATTGTAAAGCTGGGCTCTTCGTCTTCCAATAGTCCCTGGGCC
TTACCCGGGAGGGTGCTTGTCGGTGGCGACGACGGTAGATCAGGGGAGGC
TGGGGCTGCGGCATTAGAAGCAGAAGCAGAAGGAGCAGTAGTAGCTGGGG
CGGGCGAGGAGGAGGGAGAAGAGGGAAGCTGCTGTGCAGGAGGAGGGGCC
TCGAATGGGGGTGGAAAACAACAACAGAGAAACATGGTGGTGCTATTGAT
GGGTTGTGGGAATATGTTGTGAGCATTTGTGGGGAACGACGAGCAATGCA
GGCGAGCAACGGGCCTTTGAACTTGCTGAAAATGAATGCGGTGAGAGTTT
TTTGTGGGTTATTTATTTGTACTGGTACACGGCTGCCAAGCACAGGGACC
AGGATGTCACACTTACCCACATACAACCCACGCACACACATAAGACGCCC
GGTAAGGTTACAAGCGAGCACGCGGAGCAGAAGAGTCAACCGGAGGCAAG
GCCAGCAGTATTGCTACAGCATCATTAGCAGCAGCGACATCATCGTGTCG
TCCACAACCCCTAACAAACAACACACACAACATGACCATAGAGGAAAACA
GCCTCGAGCAGCGCCGGGCAGGGTACGTATGGAGGGGGCTGGTATAGAAG
TATGGTGGAAAGAGCGAGGGAAATGTGGAGAGAGGCATGCTTGGATAATA
AAGAGGCTCCCATCTATTCCATCCCTTCTTCTTCCTCCTTGACCAGGCTG
AAAGCTGAGCTGCATAACATAGAGCGGCAGATATTCGATTTGGAAGGGAG
CTACCTCGATGAGACTCTGGCGACGGGCAATGTCTTACGCGGTTGGGATG
TGGCATTGAAGAGCACCACGGACAGCACGGCGGCAGTCAAGACCATTTCC
AAGAAGATCAATCGTGAGgtatgcgtaggcgatgagttaggtcgaagatg
gaggggcgaaaatgtttgctatgatcgcgtgtactcacacttgttcctca
tattctaatttacccgcagGACCGACTCTTCTCACTTTCCTCTGTGACGT
CCCCTCCGATGGTGACGCTGAAGGAGAAATCCGAGGAGGAAGAAGAGGAG
GAGGATGACAAGGAGGAAGGAAGCGACAATGGCGATGACGAGGAGGATGA
GGACGGTGATGATGGTGATGAGGCAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGGGGAGGGTTCTGACGAGGGGGAGGAGGAGGAAGA
AGAAGAAGATGATGAGGATAAAGAGGAGGAAGAAACGACCAGCAAGAAAA
GAAAGACGCCTCTTAAGGGAAGCAGCAAGGTGACAGGGAGGAAACCGCCA
ACGAAGGCTCGACTTAAGGCCGGTGGGAAGAAGTCTTCCAGGGTCAAGCG
ACCACAGAAGAAGGCACGGCCACAACCGAGGAAGGGCTCGGCACAGAAGA
AGACGGCGACTCTACGACGGCGTTAGATTGAATGAATTGCTTTTTTTGGT
GTAGAAGTGAAAGGCTGAACCAGCCTCACCCCAGCGGCTGGTCTTGGTAT
AAAATAAATGATGAAAAAAAAACCAAAGATTTTTGT
back to top

protein sequence of NO07G01260.1

>NO07G01260.1-protein ID=NO07G01260.1-protein|Name=NO07G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MTIEENSLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVA
LKSTTDSTAAVKTISKKINREDRLFSLSSVTSPPMVTLKEKSEEEEEEED
DKEEGSDNGDDEEDEDGDDGDEAEEEEEEEEEEEEEEEEEEEEEEEEEEE
EEEGEGSDEGEEEEEEEDDEDKEEEETTSKKRKTPLKGSSKVTGRKPPTK
ARLKAGGKKSSRVKRPQKKARPQPRKGSAQKKTATLRRR*
back to top

protein sequence of NO07G01260.2

>NO07G01260.2-protein ID=NO07G01260.2-protein|Name=NO07G01260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MTIEENSLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVA
LKSTTDSTAAVKTISKKINREDRLFSLSSVTSPPMVTLKEKSEEEEEEED
DKEEGSDNGDDEEDEDGDDGDEAEEEEEEEEEEEEEEEEEEEEEEEEEEE
EEEGEGSDEGEEEEEEEDDEDKEEEETTSKKRKTPLKGSSKVTGRKPPTK
ARLKAGGKKSSRVKRPQKKARPQPRKGSAQKKTATLRRR*
back to top

protein sequence of NO07G01260.3

>NO07G01260.3-protein ID=NO07G01260.3-protein|Name=NO07G01260.3|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MVERAREMWREACLDNKEAPIYSIPSSSSLTRLKAELHNIERQIFDLEGS
YLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSVTS
PPMVTLKEKSEEEEEEEDDKEEGSDNGDDEEDEDGDDGDEAEEEEEEEEE
EEEEEEEEEEEEEEEEEEEEEGEGSDEGEEEEEEEDDEDKEEEETTSKKR
KTPLKGSSKVTGRKPPTKARLKAGGKKSSRVKRPQKKARPQPRKGSAQKK
TATLRRR*
back to top
Synonyms
Publications