NO07G01260.1, NO07G01260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01260.1
Unique NameNO07G01260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1557
Alignment locationchr7:398900..400785 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:398900..400785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01260.1 vs.
Match: XP_022849432.1 (chromatin modification-related protein MEAF6 [Olea europaea var. sylvestris])

HSP 1 Score: 72.0 bits (175), Expect = 2.800e-9
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 0 
Query:    6 NSLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVALKSTTDSTAAVKTISKKINREDRLFSLSSVTSPPMVTLKEKSEE 95
            +SL  +R  L+ EL N+E+Q+++LE SYL ET   GN LRG+D  L S+T +TA  K  S+K   EDR+FSLSSVTSP    L+   EE
Sbjct:   17 SSLLHKREKLQEELRNVEKQVYELETSYLQETSTLGNALRGFDGFL-SSTKNTANFKR-SRKFQLEDRVFSLSSVTSPAAEELRVVREE 103
The following BLAST results are available for this feature:
BLAST of NO07G01260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_022849432.12.800e-950.56chromatin modification-related protein MEAF6 [Olea... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01260NO07G01260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01260.1NO07G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01260.1.cds1NO07G01260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01260.1.cds2NO07G01260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01260.1.cds3NO07G01260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01260.1 ID=NO07G01260.1|Name=NO07G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
AGCAGCAGCAGCAGCAGCAGCAGCGGCCGCAGCATCAGCAGCGGCAGGGG
GGGCAAAGGCAGCAGCCGCGGGAACAGCGGTTGCGGCGGCCGTAGGACGT
GGTGGAGCGTCGGTGCCGTTCTCTTCGCCTTCTGCGACAATGGCCTCCAG
TTCTTCGTCACTGCACGGTCGTTGAAACGATTATATGAGGAGAGGAAAGG
AATGGCGCGAGGAAGGGAGGGACGGGGGCAAATGGGCTGCATCCCAACTC
ACCTCAGGATTGTAAAGCTGGGCTCTTCGTCTTCCAATAGTCCCTGGGCC
TTACCCGGGAGGGTGCTTGTCGGTGGCGACGACGGTAGATCAGGGGAGGC
TGGGGCTGCGGCATTAGAAGCAGAAGCAGAAGGAGCAGTAGTAGCTGGGG
CGGGCGAGGAGGAGGGAGAAGAGGGAAGCTGCTGTGCAGGAGGAGGGGCC
TCGAATGGGGGTGGAAAACAACAACAGAGAAACATGGTGGTGCTATTGAT
GGGTTGTGGGAATATGTTGTGAGCATTTGTGGGGAACGACGAGCAATGCA
GGCGAGCAACGGGCCTTTGAACTTGCTGAAAATGAATGCGACGCCCGGTA
AGGTTACAAGCGAGCACGCGGAGCAGAAGAGTCAACCGGAGGCAAGGCCA
GCAGTATTGCTACAGCATCATTAGCAGCAGCGACATCATCGTGTCGTCCA
CAACCCCTAACAAACAACACACACAACATGACCATAGAGGAAAACAGCCT
CGAGCAGCGCCGGGCAGGGCTGAAAGCTGAGCTGCATAACATAGAGCGGC
AGATATTCGATTTGGAAGGGAGCTACCTCGATGAGACTCTGGCGACGGGC
AATGTCTTACGCGGTTGGGATGTGGCATTGAAGAGCACCACGGACAGCAC
GGCGGCAGTCAAGACCATTTCCAAGAAGATCAATCGTGAGGACCGACTCT
TCTCACTTTCCTCTGTGACGTCCCCTCCGATGGTGACGCTGAAGGAGAAA
TCCGAGGAGGAAGAAGAGGAGGAGGATGACAAGGAGGAAGGAAGCGACAA
TGGCGATGACGAGGAGGATGAGGACGGTGATGATGGTGATGAGGCAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGAGGGTTCTGA
CGAGGGGGAGGAGGAGGAAGAAGAAGAAGATGATGAGGATAAAGAGGAGG
AAGAAACGACCAGCAAGAAAAGAAAGACGCCTCTTAAGGGAAGCAGCAAG
GTGACAGGGAGGAAACCGCCAACGAAGGCTCGACTTAAGGCCGGTGGGAA
GAAGTCTTCCAGGGTCAAGCGACCACAGAAGAAGGCACGGCCACAACCGA
GGAAGGGCTCGGCACAGAAGAAGACGGCGACTCTACGACGGCGTTAGATT
GAATGAATTGCTTTTTTTGGTGTAGAAGTGAAAGGCTGAACCAGCCTCAC
CCCAGCGGCTGGTCTTGGTATAAAATAAATGATGAAAAAAAAACCAAAGA
TTTTTGT
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protein sequence of NO07G01260.1

>NO07G01260.1-protein ID=NO07G01260.1-protein|Name=NO07G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MTIEENSLEQRRAGLKAELHNIERQIFDLEGSYLDETLATGNVLRGWDVA
LKSTTDSTAAVKTISKKINREDRLFSLSSVTSPPMVTLKEKSEEEEEEED
DKEEGSDNGDDEEDEDGDDGDEAEEEEEEEEEEEEEEEEEEEEEEEEEEE
EEEGEGSDEGEEEEEEEDDEDKEEEETTSKKRKTPLKGSSKVTGRKPPTK
ARLKAGGKKSSRVKRPQKKARPQPRKGSAQKKTATLRRR*
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mRNA from alignment at chr7:398900..400785+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01260.1 ID=NO07G01260.1|Name=NO07G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1886bp|location=Sequence derived from alignment at chr7:398900..400785+ (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGCAGCGGCCGCAGCATCAGCAGCGGCAGGGG
GGGCAAAGGCAGCAGCCGCGGGAACAGCGGTTGCGGCGGCCGTAGGACGT
GGTGGAGCGTCGGTGCCGTTCTCTTCGCCTTCTGCGACAATGGCCTCCAG
TTCTTCGTCACTGCACGGTCGTTGAAACGATTATATGAGGAGAGGAAAGG
AATGGCGCGAGGAAGGGAGGGACGGGGGCAAATGGGCTGCATCCCAACTC
ACCTCAGGATTGTAAAGCTGGGCTCTTCGTCTTCCAATAGTCCCTGGGCC
TTACCCGGGAGGGTGCTTGTCGGTGGCGACGACGGTAGATCAGGGGAGGC
TGGGGCTGCGGCATTAGAAGCAGAAGCAGAAGGAGCAGTAGTAGCTGGGG
CGGGCGAGGAGGAGGGAGAAGAGGGAAGCTGCTGTGCAGGAGGAGGGGCC
TCGAATGGGGGTGGAAAACAACAACAGAGAAACATGGTGGTGCTATTGAT
GGGTTGTGGGAATATGTTGTGAGCATTTGTGGGGAACGACGAGCAATGCA
GGCGAGCAACGGGCCTTTGAACTTGCTGAAAATGAATGCGGTGAGAGTTT
TTTGTGGGTTATTTATTTGTACTGGTACACGGCTGCCAAGCACAGGGACC
AGGATGTCACACTTACCCACATACAACCCACGCACACACATAAGACGCCC
GGTAAGGTTACAAGCGAGCACGCGGAGCAGAAGAGTCAACCGGAGGCAAG
GCCAGCAGTATTGCTACAGCATCATTAGCAGCAGCGACATCATCGTGTCG
TCCACAACCCCTAACAAACAACACACACAACATGACCATAGAGGAAAACA
GCCTCGAGCAGCGCCGGGCAGGGTACGTATGGAGGGGGCTGGTATAGAAG
TATGGTGGAAAGAGCGAGGGAAATGTGGAGAGAGGCATGCTTGGATAATA
AAGAGGCTCCCATCTATTCCATCCCTTCTTCTTCCTCCTTGACCAGGCTG
AAAGCTGAGCTGCATAACATAGAGCGGCAGATATTCGATTTGGAAGGGAG
CTACCTCGATGAGACTCTGGCGACGGGCAATGTCTTACGCGGTTGGGATG
TGGCATTGAAGAGCACCACGGACAGCACGGCGGCAGTCAAGACCATTTCC
AAGAAGATCAATCGTGAGGTATGCGTAGGCGATGAGTTAGGTCGAAGATG
GAGGGGCGAAAATGTTTGCTATGATCGCGTGTACTCACACTTGTTCCTCA
TATTCTAATTTACCCGCAGGACCGACTCTTCTCACTTTCCTCTGTGACGT
CCCCTCCGATGGTGACGCTGAAGGAGAAATCCGAGGAGGAAGAAGAGGAG
GAGGATGACAAGGAGGAAGGAAGCGACAATGGCGATGACGAGGAGGATGA
GGACGGTGATGATGGTGATGAGGCAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGGGGAGGGTTCTGACGAGGGGGAGGAGGAGGAAGA
AGAAGAAGATGATGAGGATAAAGAGGAGGAAGAAACGACCAGCAAGAAAA
GAAAGACGCCTCTTAAGGGAAGCAGCAAGGTGACAGGGAGGAAACCGCCA
ACGAAGGCTCGACTTAAGGCCGGTGGGAAGAAGTCTTCCAGGGTCAAGCG
ACCACAGAAGAAGGCACGGCCACAACCGAGGAAGGGCTCGGCACAGAAGA
AGACGGCGACTCTACGACGGCGTTAGATTGAATGAATTGCTTTTTTTGGT
GTAGAAGTGAAAGGCTGAACCAGCCTCACCCCAGCGGCTGGTCTTGGTAT
AAAATAAATGATGAAAAAAAAACCAAAGATTTTTGT
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Coding sequence (CDS) from alignment at chr7:398900..400785+

>NO07G01260.1 ID=NO07G01260.1|Name=NO07G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr7:398900..400785+ (Nannochloropsis oceanica)
ATGACCATAGAGGAAAACAGCCTCGAGCAGCGCCGGGCAGGGCTGAAAGC
TGAGCTGCATAACATAGAGCGGCAGATATTCGATTTGGAAGGGAGCTACC
TCGATGAGACTCTGGCGACGGGCAATGTCTTACGCGGTTGGGATGTGGCA
TTGAAGAGCACCACGGACAGCACGGCGGCAGTCAAGACCATTTCCAAGAA
GATCAATCGTGAGGACCGACTCTTCTCACTTTCCTCTGTGACGTCCCCTC
CGATGGTGACGCTGAAGGAGAAATCCGAGGAGGAAGAAGAGGAGGAGGAT
GACAAGGAGGAAGGAAGCGACAATGGCGATGACGAGGAGGATGAGGACGG
TGATGATGGTGATGAGGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGGGGAGGGTTCTGACGAGGGGGAGGAGGAGGAAGAAGAAGA
AGATGATGAGGATAAAGAGGAGGAAGAAACGACCAGCAAGAAAAGAAAGA
CGCCTCTTAAGGGAAGCAGCAAGGTGACAGGGAGGAAACCGCCAACGAAG
GCTCGACTTAAGGCCGGTGGGAAGAAGTCTTCCAGGGTCAAGCGACCACA
GAAGAAGGCACGGCCACAACCGAGGAAGGGCTCGGCACAGAAGAAGACGG
CGACTCTACGACGGCGTTAG
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Synonyms
Publications