NO07G01210, NO07G01210 (gene) Nannochloropsis oceanica

Overview
NameNO07G01210
Unique NameNO07G01210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1275
Alignment locationchr7:387580..388854 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:387580..388854 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G01210 vs. NCBI_GenBank
Match: EWM27267.1 (hypothetical protein Naga_100038g19 [Nannochloropsis gaditana])

HSP 1 Score: 94.7 bits (234), Expect = 4.900e-16
Identity = 61/129 (47.29%), Postives = 81/129 (62.79%), Query Frame = 0 
Query:  145 LRAWGPSFGMKEPSGYASLLLTSTGNRTSFSTSVV-PLPSTSASTTPGXXXXAAIEAATGAVGQSPSLWCSLHGSPTFGDGRQQQRMKRAPSEELEDAANELTKRLRLESGASARLRQGMLDSLRGPTA 273
            LR WGP+FGMKEPS +ASL+L S   +T  S ++   LP+ +A++         +   +  +   PS W  LHGSPTFG GR+ QR KR   E+LE AA EL KR+R+ES  SA+LR+ +L  LRGP A
Sbjct:  169 LRPWGPAFGMKEPSDFASLILVSRKRQTPASATMEGSLPACAAASEKAKATAPCVSETSSDL---PSPWSLLHGSPTFGAGRRGQR-KRNAREDLETAACELVKRVRVESAVSAQLREDVLSLLRGPCA 293
The following BLAST results are available for this feature:
BLAST of NO07G01210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27267.14.900e-1647.29hypothetical protein Naga_100038g19 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01210.1NO07G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580385gene_2442Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01210.1NO07G01210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01210 ID=NO07G01210|Name=NO07G01210|organism=Nannochloropsis oceanica|type=gene|length=1275bp
ATGGCATCGCCCAGCGGCAAAGGCAGTGGGACTACAAGCGGCAAGAGCAG
GAGCAGTGGTGTTTTGTGGACGTCATCTTGCTCCCCTCTTACTATCTCTA
AGCGGGACAAGGCGGGTCTGCCATGCCCCGGAGACGATTCAGAGCTGCTC
AACCTCTTGGGCGACGAGAACGAAACTCTTTTTCGCACTCGTCCTTTGTG
TCCTTTGAAAGTAGGCACAGCGGAGCCACTGGCAACCGCCGGCACGACGA
TCTCTAGTGGCGACAGCAGCGGCGTCAAGGAGTCCAAGAACAGTAACAAT
GGTAGTCAAGGAGAAGGGAAGACAACCAGTACCTCGATTACAGCATCTGC
ACCTACACCTAGACCTGCACCTTCGAGTCTAATAATCGCTTCGTCCTCAT
CCTCATCTTCCTCCTCCACCACCCCTGCTTCCTTACGAGCCTGGGGTCCT
TCTTTTGGCATGAAGGAGCCCTCGGGCTATGCCTCCTTGCTCCTCACCAG
CACGGGCAATCGAACATCCTTTTCGACTTCGGTAGTCCCTCTCCCGTCTA
CTTCTGCGTCAACCACGCCCGGGTCAGCAGCTGCTGCTGCAATAGAAGCA
GCAACAGGAGCCGTGGGTCAATCGCCCTCGTTGTGGTGCTCTCTGCATGG
CTCCCCCACCTTTGGGGATGGTCGGCAGCAGCAGCGGATGAAGCGGGCAC
CATCGGAGGAGCTGGAAGACGCGGCGAATGAGCTCACGAAGCGACTCAGg
taaatgaaagtggtaaaggtgcgcgggtgtgaatagccaagttgaccata
cgaattcatacaggagacatgcaaagcgtgtttcacttcatttcatctct
caacgcatatttgcagatgtgttctgaacatttctgcgtctttgcagagt
ttaataaagcaggctggcacgtaaataaagggtcgcaactccctatcaca
ccaagccaaaaaccagcttggacttatccgcttttttaaagagggcggca
aagcgcagaattcaatgatgtggttcctcaagcatcattctaattgttgc
ccttacggcggtactatttttgcttcttctttgtgtgagcttttcttctc
atttcctcccctttctgctcttcccttccaaaatccaccgtgaacacaca
gACTTGAAAGTGGGGCCTCGGCACGGCTTCGACAGGGCATGCTCGATTCA
CTGAGAGGGCCGACTGCCCTAACAGGGGAAGGTCTCCGAGGAAGTACCGA
CGCCTCAAGAACTTCATCTGATTGA
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protein sequence of NO07G01210.1

>NO07G01210.1-protein ID=NO07G01210.1-protein|Name=NO07G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MASPSGKGSGTTSGKSRSSGVLWTSSCSPLTISKRDKAGLPCPGDDSELL
NLLGDENETLFRTRPLCPLKVGTAEPLATAGTTISSGDSSGVKESKNSNN
GSQGEGKTTSTSITASAPTPRPAPSSLIIASSSSSSSSSTTPASLRAWGP
SFGMKEPSGYASLLLTSTGNRTSFSTSVVPLPSTSASTTPGSAAAAAIEA
ATGAVGQSPSLWCSLHGSPTFGDGRQQQRMKRAPSEELEDAANELTKRLR
LESGASARLRQGMLDSLRGPTALTGEGLRGSTDASRTSSD*
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Synonyms
Publications