NO07G01210.1, NO07G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01210.1
Unique NameNO07G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length873
Alignment locationchr7:387580..388854 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:387580..388854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01210.1 vs.
Match: EWM27267.1 (hypothetical protein Naga_100038g19 [Nannochloropsis gaditana])

HSP 1 Score: 94.0 bits (232), Expect = 8.400e-16
Identity = 104/307 (33.88%), Postives = 145/307 (47.23%), Query Frame = 0 
Query:    1 MASP-------SGKGSGTTSGKSRSSGVLWTSSCSPLTISKR------------DKAGLPC---PGDDSELLNLLGDENETLF--------RTRPLCPLKVGTAEPLATAGTTISS----GDSSGVKESKNSNNGSQGEGKTTSTSITASAPTPRPAPSSLIIASSSSSSSSSTTPASLRAWGPSFGMKEPSGYASLLLTSTGNRTSFSTSVV-PLPSTSASTTPGSAAAAAIEAATGAVGQSPSLWCSLHGSPTFGDGRQQQRMKRAPSEELEDAANELTKRLRLESGASARLRQGMLDSLRGPTA 273
            MASP       SG  +    GK   + VLW +S SP   S R            D    P    P  D +  NL GD+N  L          T P    ++ +A  + T+ + +S+     ++ G +      N  +   +  + S T S   P+P         S S S      + LR WGP+FGMKEPS +ASL+L S   +T  S ++   LP+ +A++    A A  +   +  +   PS W  LHGSPTFG GR+ QR KR   E+LE AA EL KR+R+ES  SA+LR+ +L  LRGP A
Sbjct:    1 MASPGDVTNTNSGGNTDKQGGKKNGAVVLWAAS-SPTPASLRAGEKGMKKPLSPDFIKRPASSEPDRDLDASNLFGDDNGGLILPHPHVARTTTPTSTARLSSASSITTSTSVVSTPAPTANAVGAQSYSTPTNHLKSCHRIPAASATTSQVIPQP---------SESPSPPVPKASFLRPWGPAFGMKEPSDFASLILVSRKRQTPASATMEGSLPACAAASEKAKATAPCVSETSSDL---PSPWSLLHGSPTFGAGRRGQR-KRNAREDLETAACELVKRVRVESAVSAQLREDVLSLLRGPCA 293
The following BLAST results are available for this feature:
BLAST of NO07G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27267.18.400e-1633.88hypothetical protein Naga_100038g19 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01210NO07G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01210.1NO07G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01210.1.cds1NO07G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G01210.1.cds2NO07G01210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01210.1 ID=NO07G01210.1|Name=NO07G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=873bp
ATGGCATCGCCCAGCGGCAAAGGCAGTGGGACTACAAGCGGCAAGAGCAG
GAGCAGTGGTGTTTTGTGGACGTCATCTTGCTCCCCTCTTACTATCTCTA
AGCGGGACAAGGCGGGTCTGCCATGCCCCGGAGACGATTCAGAGCTGCTC
AACCTCTTGGGCGACGAGAACGAAACTCTTTTTCGCACTCGTCCTTTGTG
TCCTTTGAAAGTAGGCACAGCGGAGCCACTGGCAACCGCCGGCACGACGA
TCTCTAGTGGCGACAGCAGCGGCGTCAAGGAGTCCAAGAACAGTAACAAT
GGTAGTCAAGGAGAAGGGAAGACAACCAGTACCTCGATTACAGCATCTGC
ACCTACACCTAGACCTGCACCTTCGAGTCTAATAATCGCTTCGTCCTCAT
CCTCATCTTCCTCCTCCACCACCCCTGCTTCCTTACGAGCCTGGGGTCCT
TCTTTTGGCATGAAGGAGCCCTCGGGCTATGCCTCCTTGCTCCTCACCAG
CACGGGCAATCGAACATCCTTTTCGACTTCGGTAGTCCCTCTCCCGTCTA
CTTCTGCGTCAACCACGCCCGGGTCAGCAGCTGCTGCTGCAATAGAAGCA
GCAACAGGAGCCGTGGGTCAATCGCCCTCGTTGTGGTGCTCTCTGCATGG
CTCCCCCACCTTTGGGGATGGTCGGCAGCAGCAGCGGATGAAGCGGGCAC
CATCGGAGGAGCTGGAAGACGCGGCGAATGAGCTCACGAAGCGACTCAGA
CTTGAAAGTGGGGCCTCGGCACGGCTTCGACAGGGCATGCTCGATTCACT
GAGAGGGCCGACTGCCCTAACAGGGGAAGGTCTCCGAGGAAGTACCGACG
CCTCAAGAACTTCATCTGATTGA
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protein sequence of NO07G01210.1

>NO07G01210.1-protein ID=NO07G01210.1-protein|Name=NO07G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MASPSGKGSGTTSGKSRSSGVLWTSSCSPLTISKRDKAGLPCPGDDSELL
NLLGDENETLFRTRPLCPLKVGTAEPLATAGTTISSGDSSGVKESKNSNN
GSQGEGKTTSTSITASAPTPRPAPSSLIIASSSSSSSSSTTPASLRAWGP
SFGMKEPSGYASLLLTSTGNRTSFSTSVVPLPSTSASTTPGSAAAAAIEA
ATGAVGQSPSLWCSLHGSPTFGDGRQQQRMKRAPSEELEDAANELTKRLR
LESGASARLRQGMLDSLRGPTALTGEGLRGSTDASRTSSD*
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mRNA from alignment at chr7:387580..388854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01210.1 ID=NO07G01210.1|Name=NO07G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp|location=Sequence derived from alignment at chr7:387580..388854+ (Nannochloropsis oceanica)
ATGGCATCGCCCAGCGGCAAAGGCAGTGGGACTACAAGCGGCAAGAGCAG
GAGCAGTGGTGTTTTGTGGACGTCATCTTGCTCCCCTCTTACTATCTCTA
AGCGGGACAAGGCGGGTCTGCCATGCCCCGGAGACGATTCAGAGCTGCTC
AACCTCTTGGGCGACGAGAACGAAACTCTTTTTCGCACTCGTCCTTTGTG
TCCTTTGAAAGTAGGCACAGCGGAGCCACTGGCAACCGCCGGCACGACGA
TCTCTAGTGGCGACAGCAGCGGCGTCAAGGAGTCCAAGAACAGTAACAAT
GGTAGTCAAGGAGAAGGGAAGACAACCAGTACCTCGATTACAGCATCTGC
ACCTACACCTAGACCTGCACCTTCGAGTCTAATAATCGCTTCGTCCTCAT
CCTCATCTTCCTCCTCCACCACCCCTGCTTCCTTACGAGCCTGGGGTCCT
TCTTTTGGCATGAAGGAGCCCTCGGGCTATGCCTCCTTGCTCCTCACCAG
CACGGGCAATCGAACATCCTTTTCGACTTCGGTAGTCCCTCTCCCGTCTA
CTTCTGCGTCAACCACGCCCGGGTCAGCAGCTGCTGCTGCAATAGAAGCA
GCAACAGGAGCCGTGGGTCAATCGCCCTCGTTGTGGTGCTCTCTGCATGG
CTCCCCCACCTTTGGGGATGGTCGGCAGCAGCAGCGGATGAAGCGGGCAC
CATCGGAGGAGCTGGAAGACGCGGCGAATGAGCTCACGAAGCGACTCAGG
TAAATGAAAGTGGTAAAGGTGCGCGGGTGTGAATAGCCAAGTTGACCATA
CGAATTCATACAGGAGACATGCAAAGCGTGTTTCACTTCATTTCATCTCT
CAACGCATATTTGCAGATGTGTTCTGAACATTTCTGCGTCTTTGCAGAGT
TTAATAAAGCAGGCTGGCACGTAAATAAAGGGTCGCAACTCCCTATCACA
CCAAGCCAAAAACCAGCTTGGACTTATCCGCTTTTTTAAAGAGGGCGGCA
AAGCGCAGAATTCAATGATGTGGTTCCTCAAGCATCATTCTAATTGTTGC
CCTTACGGCGGTACTATTTTTGCTTCTTCTTTGTGTGAGCTTTTCTTCTC
ATTTCCTCCCCTTTCTGCTCTTCCCTTCCAAAATCCACCGTGAACACACA
GACTTGAAAGTGGGGCCTCGGCACGGCTTCGACAGGGCATGCTCGATTCA
CTGAGAGGGCCGACTGCCCTAACAGGGGAAGGTCTCCGAGGAAGTACCGA
CGCCTCAAGAACTTCATCTGATTGA
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Coding sequence (CDS) from alignment at chr7:387580..388854+

>NO07G01210.1 ID=NO07G01210.1|Name=NO07G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=873bp|location=Sequence derived from alignment at chr7:387580..388854+ (Nannochloropsis oceanica)
ATGGCATCGCCCAGCGGCAAAGGCAGTGGGACTACAAGCGGCAAGAGCAG
GAGCAGTGGTGTTTTGTGGACGTCATCTTGCTCCCCTCTTACTATCTCTA
AGCGGGACAAGGCGGGTCTGCCATGCCCCGGAGACGATTCAGAGCTGCTC
AACCTCTTGGGCGACGAGAACGAAACTCTTTTTCGCACTCGTCCTTTGTG
TCCTTTGAAAGTAGGCACAGCGGAGCCACTGGCAACCGCCGGCACGACGA
TCTCTAGTGGCGACAGCAGCGGCGTCAAGGAGTCCAAGAACAGTAACAAT
GGTAGTCAAGGAGAAGGGAAGACAACCAGTACCTCGATTACAGCATCTGC
ACCTACACCTAGACCTGCACCTTCGAGTCTAATAATCGCTTCGTCCTCAT
CCTCATCTTCCTCCTCCACCACCCCTGCTTCCTTACGAGCCTGGGGTCCT
TCTTTTGGCATGAAGGAGCCCTCGGGCTATGCCTCCTTGCTCCTCACCAG
CACGGGCAATCGAACATCCTTTTCGACTTCGGTAGTCCCTCTCCCGTCTA
CTTCTGCGTCAACCACGCCCGGGTCAGCAGCTGCTGCTGCAATAGAAGCA
GCAACAGGAGCCGTGGGTCAATCGCCCTCGTTGTGGTGCTCTCTGCATGG
CTCCCCCACCTTTGGGGATGGTCGGCAGCAGCAGCGGATGAAGCGGGCAC
CATCGGAGGAGCTGGAAGACGCGGCGAATGAGCTCACGAAGCGACTCAGA
CTTGAAAGTGGGGCCTCGGCACGGCTTCGACAGGGCATGCTCGATTCACT
GAGAGGGCCGACTGCCCTAACAGGGGAAGGTCTCCGAGGAAGTACCGACG
CCTCAAGAACTTCATCTGATTGA
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Synonyms
Publications