NO07G01040, NO07G01040 (gene) Nannochloropsis oceanica

Overview
NameNO07G01040
Unique NameNO07G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1875
Alignment locationchr7:337192..339066 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:337192..339066 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004345TB2_DP1_HVA22
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO07G01040 vs. NCBI_GenBank
Match: EWM27288.1 (hypothetical protein Naga_100080g23 [Nannochloropsis gaditana])

HSP 1 Score: 526.6 bits (1355), Expect = 1.100e-145
Identity = 276/501 (55.09%), Postives = 345/501 (68.86%), Query Frame = 0 
Query:   40 EWGTWPWICEHVHLVLAFSETAFLLLKEALGLSWVAICAWSRLGIVLSRPVLRLLFYLWSLALPYMQWFARTFFNHLKEQEPEVLIGYACFLGALIGFLLIRRLLRRLRVWDRCRAFVTRKVVMVEYRYHQARNKLHAYSQRAAEALPHVLFALGSVGAVWLFPKATHMLSQELVFHILLLYLPALATFYAVECSP-----FPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPWQE-QTKHTKRLNEWLSYWIMTSLVLTFGNLLEQLYLRWFTRLLPFSNEAFLFFLLWLHLPQGGHALLKQHLLPFLRRHLGGILYFQKKRDSFMKHVLSVAVFTRLLSTATADLLALHVDEMFLVLPAAVLSLSPLAGWGLLFISLIFPGFASIRALGSSGG-------------NGISKGGVHYSPIPWLKYWVVYAVSHILFQLMPFWSVIQMWFYLWILLPFELEGVPVLHKLKFDGRRRIWGVLRSVYRQEVMIIGGAGAG 522
            EW TWPW   +++L L FSE A +LL+EAL  SW+A+ AW RLG++L RPVLRLL +LW  ALPY+QWFA+ F NHLKEQEPEVL+GY  FLGA++GF L+RRLLRRLRVWDRCRA +  KV +VE RYHQARNKL+ YS+RAAEA PHVLF +  +   WLFP  T +LSQ+LVF+ LLLYLPA A+F+A+E  P     FP                               P       KH KRL E LSYWI+ + ++  G  L+QL+LRW T+ +P+ +E FL+FLLWLHLPQGG ALLK HLLPFLRRHLGGIL  Q +RD+ ++ +LS+AVF  LLS  TAD LALHVDE FLVLPAAVL+ SP AGWGLLFISL+FP  AS RALG  GG              G S+    YSP PWL+YW+VYA+ H++FQ++P W ++QMW +LW+LLP +L G+P L  +K DGRR+++G+L  ++R E+   GG   G
Sbjct:   42 EWWTWPWFNANLNLFLTFSEKAIILLREALSASWLALHAWYRLGVLLGRPVLRLLLHLWRSALPYLQWFAKAFINHLKEQEPEVLLGYGLFLGAVVGFFLLRRLLRRLRVWDRCRATIASKVALVECRYHQARNKLNQYSRRAAEAFPHVLFVVACLAVQWLFPAVTSLLSQKLVFNALLLYLPAFASFHALESFPPRKASFPGSTGTRHAKPADLPSTSRASSTAARLAPTGAPSHSHGDDKHEKRLKECLSYWIVAASIVAAGQGLDQLWLRWTTKWVPWGHECFLYFLLWLHLPQGGGALLKHHLLPFLRRHLGGILALQSRRDALVRRLLSLAVFAHLLSHPTADNLALHVDEFFLVLPAAVLTFSPFAGWGLLFISLLFPVLASARALGEEGGKRPVGSKGTKKETGGRSQSPPTYSPRPWLQYWIVYALGHVIFQVLPIWPLVQMWVFLWVLLP-DLAGIPFL-PIKLDGRRQVYGLLSRLHRLEMAGAGGKFQG 540
The following BLAST results are available for this feature:
BLAST of NO07G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27288.11.100e-14555.09hypothetical protein Naga_100080g23 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000774NSK000774Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01040.1NO07G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628474gene_2422Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100080g23gene3279Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01040.1NO07G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01040 ID=NO07G01040|Name=NO07G01040|organism=Nannochloropsis oceanica|type=gene|length=1875bp
ATGGAGGAAGAGTCAGCGGCCTCTTTCTTTCACACGTCCGAAGATGACCC
GTCCTCTTCCTCCATCTGCTCTTCCGCATCCTCCTCGTCCTGCCCATCCT
CCTCCAGCGGCGCGTACGAATGGGGCACCTGGCCATGGATCTGTGAACAT
GTACATCTCGTCCTTGCCTTTTCCGAGACGGCGTTTTTACTGCTTAAAGA
AGCCTTGGGCTTGTCGTGGGTTGCCATTTGTGCTTGGTCCCGCCTCGGCA
TTGTTCTAAGTCGCCCTGTCCTCCGCCTCCTCTTCTACTTGTGGTCGTTG
GCTTTGCCATATATGCAGTGGTTCGCCCGCACGTTTTTCAATCACTTGAA
GGAGCAAGAGCCGGAAGTGTTGATTGGGTACGCATGCTTTTTGGGTGCGC
TTATTGGTTTCCTCCTCATCAGGCGGTTGCTTCGGCGGCTGCGTGTCTGG
GACCGATGCCGCGCATTTGTCACTCGGAAAGTCGTTATGGTTGAATATCG
ATACCACCAAGCACGCAATAAGCTCCATGCGTACTCCCAACGGGCAGCCG
AGGCATTGCCGCACGTCTTGTTCGCTTTGGGGAGCGTGGGTGCCGTGTGG
TTGTTCCCAAAAGCAACCCATATGCTATCCCAAGAGCTGGTCTTTCACAT
CTTGTTGTTGTATTTGCCCGCACTAGCAACCTTCTATGCCGTCGAGTGCT
CCCCTTTCCCGCCCTCGCCGCCATCTACTGCTACTGCTACTTCTCTAAGA
AGCAAGCAAGGCAAGCCACCCTCCTACCCCTCCTCTTCTACCCCCGCCAC
TACCCCCCCCTGGCAAGAGCAAACCAAGCACACCAAGCGCCTCAACGAAT
GGCTCTCCTACTGGATCATGACCTCCTTAGTACTGACGTTTGGTAACCTC
CTCGAACAATTGTACCTGCGGTGGTTCACCAGACTCCTCCCCTTCAGTAA
CGAAGCTTTCCTTTTCTTCCTCCTCTGGCTCCATCTTCCTCAAGGTGGCC
ATGCTCTGCTCAAACAGCACCTCCTTCCCTTCCTCCGCCGGCACCTTGGA
GGCATCCTATACTTCCAGAAGAAACGGGACTCATTTATGAAGCACGTGCT
AAGTGTCGCTGTCTTCACTCGTCTCCTGAGCACAGCCACTGCTGACCTTC
TCGCTCTTCATGTCGATGAGATGTTTCTCGTTCTCCCTGCTGCGGTTCTG
TCTCTCTCTCCCTTGGCAGGTTGGGGACTGCTATTCATTTCTTTGATTTT
TCCAGGTTTTGCTTCGATTCGTGCACTGGGAAGCAGTGGTGGTAATGGTA
TTAGTAAAGGAGGAGTGCATTACAGCCCCATCCCTTGGTTGAAGTATTGG
GTGGTGTACGCGGTTTCTCACATCTTGTTTCAGCTTATGCCGTTTTGGTC
GGTCATTCAAATGTGGTTTTATCTCTGGATATTGCTCCCGTTCGAATTGG
AAGGCGTGCCTGTACTGCATAAATTAAAATTCGATGGACGGAGGAGGATC
TGGGGTGTCTTACGCAGTGTGTACCGGCAGGAGGTGATGATTATCGGAGG
AGCAGGAGCAGGAGCAGGAAAAGTAGCAGCAGCGGGGAAAATGGCAGGGG
CACGGGGAGAAGCAGGAGGAGGGGAGTCAAGAGAAGGTCCACAGCAAGAG
ATGCAGCAGCCGGAAGGAGGAGACGAAGAAAAGTCGATTCATCCCCCCGT
GTCCTCCACTTCCTCGTCCTTCGCTTCAGAAAAGAGCAACACAGAATTGA
AGCGGCGATCGGGAGGGGGAAGGAAAGAAATGGGTGTGTTACGGAGGGAG
GAGGAAGAAATGGAGGGAGAAGAGGGGGAGGGGGAAGTCAAAGGAGAGGT
CTTGGGAGGTGGGGGAGGAAGATGA
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protein sequence of NO07G01040.1

>NO07G01040.1-protein ID=NO07G01040.1-protein|Name=NO07G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MEEESAASFFHTSEDDPSSSSICSSASSSSCPSSSSGAYEWGTWPWICEH
VHLVLAFSETAFLLLKEALGLSWVAICAWSRLGIVLSRPVLRLLFYLWSL
ALPYMQWFARTFFNHLKEQEPEVLIGYACFLGALIGFLLIRRLLRRLRVW
DRCRAFVTRKVVMVEYRYHQARNKLHAYSQRAAEALPHVLFALGSVGAVW
LFPKATHMLSQELVFHILLLYLPALATFYAVECSPFPPSPPSTATATSLR
SKQGKPPSYPSSSTPATTPPWQEQTKHTKRLNEWLSYWIMTSLVLTFGNL
LEQLYLRWFTRLLPFSNEAFLFFLLWLHLPQGGHALLKQHLLPFLRRHLG
GILYFQKKRDSFMKHVLSVAVFTRLLSTATADLLALHVDEMFLVLPAAVL
SLSPLAGWGLLFISLIFPGFASIRALGSSGGNGISKGGVHYSPIPWLKYW
VVYAVSHILFQLMPFWSVIQMWFYLWILLPFELEGVPVLHKLKFDGRRRI
WGVLRSVYRQEVMIIGGAGAGAGKVAAAGKMAGARGEAGGGESREGPQQE
MQQPEGGDEEKSIHPPVSSTSSSFASEKSNTELKRRSGGGRKEMGVLRRE
EEEMEGEEGEGEVKGEVLGGGGGR*
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Synonyms
Publications