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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:337192..339066 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G01040.1 vs.
Match: EWM27288.1 (hypothetical protein Naga_100080g23 [Nannochloropsis gaditana]) HSP 1 Score: 530.4 bits (1365), Expect = 7.500e-147 Identity = 296/540 (54.81%), Postives = 372/540 (68.89%), Query Frame = 0
Query: 17 PSSSSICSSASSSSCPSSSSGAYEWGTWPWICEHVHLVLAFSETAFLLLKEALGLSWVAICAWSRLGIVLSRPVLRLLFYLWSLALPYMQWFARTFFNHLKEQEPEVLIGYACFLGALIGFLLIRRLLRRLRVWDRCRAFVTRKVVMVEYRYHQARNKLHAYSQRAAEALPHVLFALGSVGAVWLFPKATHMLSQELVFHILLLYLPALATFYAVECSPFPPSPPSTATATSLRSKQGKPPSYPSSSTPATTPPWQEQT----------KHTKRLNEWLSYWIMTSLVLTFGNLLEQLYLRWFTRLLPFSNEAFLFFLLWLHLPQGGHALLKQHLLPFLRRHLGGILYFQKKRDSFMKHVLSVAVFTRLLSTATADLLALHVDEMFLVLPAAVLSLSPLAGWGLLFISLIFPGFASIRALGSSGG-------------NGISKGGVHYSPIPWLKYWVVYAVSHILFQLMPFWSVIQMWFYLWILLPFELEGVPVLHKLKFDGRRRIWGVLRSVYRQEVMIIGGAGAGAGKVAAAGKMAG 534
P SS+ S S SS PS+ EW TWPW +++L L FSE A +LL+EAL SW+A+ AW RLG++L RPVLRLL +LW ALPY+QWFA+ F NHLKEQEPEVL+GY FLGA++GF L+RRLLRRLRVWDRCRA + KV +VE RYHQARNKL+ YS+RAAEA PHVLF + + WLFP T +LSQ+LVF+ LLLYLPA A+F+A+E FPP S +T R KP PS+S ++T T KH KRL E LSYWI+ + ++ G L+QL+LRW T+ +P+ +E FL+FLLWLHLPQGG ALLK HLLPFLRRHLGGIL Q +RD+ ++ +LS+AVF LLS TAD LALHVDE FLVLPAAVL+ SP AGWGLLFISL+FP AS RALG GG G S+ YSP PWL+YW+VYA+ H++FQ++P W ++QMW +LW+LLP +L G+P L +K DGRR+++G+L ++R E+ GG G + G G
Sbjct: 24 PHSSTPLSGHSISSPPSN-----EWWTWPWFNANLNLFLTFSEKAIILLREALSASWLALHAWYRLGVLLGRPVLRLLLHLWRSALPYLQWFAKAFINHLKEQEPEVLLGYGLFLGAVVGFFLLRRLLRRLRVWDRCRATIASKVALVECRYHQARNKLNQYSRRAAEAFPHVLFVVACLAVQWLFPAVTSLLSQKLVFNALLLYLPAFASFHALE--SFPPRKASFPGSTGTR--HAKPADLPSTSRASSTAARLAPTGAPSHSHGDDKHEKRLKECLSYWIVAASIVAAGQGLDQLWLRWTTKWVPWGHECFLYFLLWLHLPQGGGALLKHHLLPFLRRHLGGILALQSRRDALVRRLLSLAVFAHLLSHPTADNLALHVDEFFLVLPAAVLTFSPFAGWGLLFISLLFPVLASARALGEEGGKRPVGSKGTKKETGGRSQSPPTYSPRPWLQYWIVYALGHVIFQVLPIWPLVQMWVFLWVLLP-DLAGIPFL-PIKLDGRRQVYGLLSRLHRLEMAGAGGKFQGQEQANPPGAEDG 552
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G01040.1 ID=NO07G01040.1|Name=NO07G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp ATGGAGGAAGAGTCAGCGGCCTCTTTCTTTCACACGTCCGAAGATGACCC GTCCTCTTCCTCCATCTGCTCTTCCGCATCCTCCTCGTCCTGCCCATCCT CCTCCAGCGGCGCGTACGAATGGGGCACCTGGCCATGGATCTGTGAACAT GTACATCTCGTCCTTGCCTTTTCCGAGACGGCGTTTTTACTGCTTAAAGA AGCCTTGGGCTTGTCGTGGGTTGCCATTTGTGCTTGGTCCCGCCTCGGCA TTGTTCTAAGTCGCCCTGTCCTCCGCCTCCTCTTCTACTTGTGGTCGTTG GCTTTGCCATATATGCAGTGGTTCGCCCGCACGTTTTTCAATCACTTGAA GGAGCAAGAGCCGGAAGTGTTGATTGGGTACGCATGCTTTTTGGGTGCGC TTATTGGTTTCCTCCTCATCAGGCGGTTGCTTCGGCGGCTGCGTGTCTGG GACCGATGCCGCGCATTTGTCACTCGGAAAGTCGTTATGGTTGAATATCG ATACCACCAAGCACGCAATAAGCTCCATGCGTACTCCCAACGGGCAGCCG AGGCATTGCCGCACGTCTTGTTCGCTTTGGGGAGCGTGGGTGCCGTGTGG TTGTTCCCAAAAGCAACCCATATGCTATCCCAAGAGCTGGTCTTTCACAT CTTGTTGTTGTATTTGCCCGCACTAGCAACCTTCTATGCCGTCGAGTGCT CCCCTTTCCCGCCCTCGCCGCCATCTACTGCTACTGCTACTTCTCTAAGA AGCAAGCAAGGCAAGCCACCCTCCTACCCCTCCTCTTCTACCCCCGCCAC TACCCCCCCCTGGCAAGAGCAAACCAAGCACACCAAGCGCCTCAACGAAT GGCTCTCCTACTGGATCATGACCTCCTTAGTACTGACGTTTGGTAACCTC CTCGAACAATTGTACCTGCGGTGGTTCACCAGACTCCTCCCCTTCAGTAA CGAAGCTTTCCTTTTCTTCCTCCTCTGGCTCCATCTTCCTCAAGGTGGCC ATGCTCTGCTCAAACAGCACCTCCTTCCCTTCCTCCGCCGGCACCTTGGA GGCATCCTATACTTCCAGAAGAAACGGGACTCATTTATGAAGCACGTGCT AAGTGTCGCTGTCTTCACTCGTCTCCTGAGCACAGCCACTGCTGACCTTC TCGCTCTTCATGTCGATGAGATGTTTCTCGTTCTCCCTGCTGCGGTTCTG TCTCTCTCTCCCTTGGCAGGTTGGGGACTGCTATTCATTTCTTTGATTTT TCCAGGTTTTGCTTCGATTCGTGCACTGGGAAGCAGTGGTGGTAATGGTA TTAGTAAAGGAGGAGTGCATTACAGCCCCATCCCTTGGTTGAAGTATTGG GTGGTGTACGCGGTTTCTCACATCTTGTTTCAGCTTATGCCGTTTTGGTC GGTCATTCAAATGTGGTTTTATCTCTGGATATTGCTCCCGTTCGAATTGG AAGGCGTGCCTGTACTGCATAAATTAAAATTCGATGGACGGAGGAGGATC TGGGGTGTCTTACGCAGTGTGTACCGGCAGGAGGTGATGATTATCGGAGG AGCAGGAGCAGGAGCAGGAAAAGTAGCAGCAGCGGGGAAAATGGCAGGGG CACGGGGAGAAGCAGGAGGAGGGGAGTCAAGAGAAGGTCCACAGCAAGAG ATGCAGCAGCCGGAAGGAGGAGACGAAGAAAAGTCGATTCATCCCCCCGT GTCCTCCACTTCCTCGTCCTTCGCTTCAGAAAAGAGCAACACAGAATTGA AGCGGCGATCGGGAGGGGGAAGGAAAGAAATGGGTGTGTTACGGAGGGAG GAGGAAGAAATGGAGGGAGAAGAGGGGGAGGGGGAAGTCAAAGGAGAGGT CTTGGGAGGTGGGGGAGGAAGATGA back to topprotein sequence of NO07G01040.1 >NO07G01040.1-protein ID=NO07G01040.1-protein|Name=NO07G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp MEEESAASFFHTSEDDPSSSSICSSASSSSCPSSSSGAYEWGTWPWICEH VHLVLAFSETAFLLLKEALGLSWVAICAWSRLGIVLSRPVLRLLFYLWSL ALPYMQWFARTFFNHLKEQEPEVLIGYACFLGALIGFLLIRRLLRRLRVW DRCRAFVTRKVVMVEYRYHQARNKLHAYSQRAAEALPHVLFALGSVGAVW LFPKATHMLSQELVFHILLLYLPALATFYAVECSPFPPSPPSTATATSLR SKQGKPPSYPSSSTPATTPPWQEQTKHTKRLNEWLSYWIMTSLVLTFGNL LEQLYLRWFTRLLPFSNEAFLFFLLWLHLPQGGHALLKQHLLPFLRRHLG GILYFQKKRDSFMKHVLSVAVFTRLLSTATADLLALHVDEMFLVLPAAVL SLSPLAGWGLLFISLIFPGFASIRALGSSGGNGISKGGVHYSPIPWLKYW VVYAVSHILFQLMPFWSVIQMWFYLWILLPFELEGVPVLHKLKFDGRRRI WGVLRSVYRQEVMIIGGAGAGAGKVAAAGKMAGARGEAGGGESREGPQQE MQQPEGGDEEKSIHPPVSSTSSSFASEKSNTELKRRSGGGRKEMGVLRRE EEEMEGEEGEGEVKGEVLGGGGGR* back to topmRNA from alignment at chr7:337192..339066+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G01040.1 ID=NO07G01040.1|Name=NO07G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp|location=Sequence derived from alignment at chr7:337192..339066+ (Nannochloropsis oceanica) ATGGAGGAAGAGTCAGCGGCCTCTTTCTTTCACACGTCCGAAGATGACCC
GTCCTCTTCCTCCATCTGCTCTTCCGCATCCTCCTCGTCCTGCCCATCCT
CCTCCAGCGGCGCGTACGAATGGGGCACCTGGCCATGGATCTGTGAACAT
GTACATCTCGTCCTTGCCTTTTCCGAGACGGCGTTTTTACTGCTTAAAGA
AGCCTTGGGCTTGTCGTGGGTTGCCATTTGTGCTTGGTCCCGCCTCGGCA
TTGTTCTAAGTCGCCCTGTCCTCCGCCTCCTCTTCTACTTGTGGTCGTTG
GCTTTGCCATATATGCAGTGGTTCGCCCGCACGTTTTTCAATCACTTGAA
GGAGCAAGAGCCGGAAGTGTTGATTGGGTACGCATGCTTTTTGGGTGCGC
TTATTGGTTTCCTCCTCATCAGGCGGTTGCTTCGGCGGCTGCGTGTCTGG
GACCGATGCCGCGCATTTGTCACTCGGAAAGTCGTTATGGTTGAATATCG
ATACCACCAAGCACGCAATAAGCTCCATGCGTACTCCCAACGGGCAGCCG
AGGCATTGCCGCACGTCTTGTTCGCTTTGGGGAGCGTGGGTGCCGTGTGG
TTGTTCCCAAAAGCAACCCATATGCTATCCCAAGAGCTGGTCTTTCACAT
CTTGTTGTTGTATTTGCCCGCACTAGCAACCTTCTATGCCGTCGAGTGCT
CCCCTTTCCCGCCCTCGCCGCCATCTACTGCTACTGCTACTTCTCTAAGA
AGCAAGCAAGGCAAGCCACCCTCCTACCCCTCCTCTTCTACCCCCGCCAC
TACCCCCCCCTGGCAAGAGCAAACCAAGCACACCAAGCGCCTCAACGAAT
GGCTCTCCTACTGGATCATGACCTCCTTAGTACTGACGTTTGGTAACCTC
CTCGAACAATTGTACCTGCGGTGGTTCACCAGACTCCTCCCCTTCAGTAA
CGAAGCTTTCCTTTTCTTCCTCCTCTGGCTCCATCTTCCTCAAGGTGGCC
ATGCTCTGCTCAAACAGCACCTCCTTCCCTTCCTCCGCCGGCACCTTGGA
GGCATCCTATACTTCCAGAAGAAACGGGACTCATTTATGAAGCACGTGCT
AAGTGTCGCTGTCTTCACTCGTCTCCTGAGCACAGCCACTGCTGACCTTC
TCGCTCTTCATGTCGATGAGATGTTTCTCGTTCTCCCTGCTGCGGTTCTG
TCTCTCTCTCCCTTGGCAGGTTGGGGACTGCTATTCATTTCTTTGATTTT
TCCAGGTTTTGCTTCGATTCGTGCACTGGGAAGCAGTGGTGGTAATGGTA
TTAGTAAAGGAGGAGTGCATTACAGCCCCATCCCTTGGTTGAAGTATTGG
GTGGTGTACGCGGTTTCTCACATCTTGTTTCAGCTTATGCCGTTTTGGTC
GGTCATTCAAATGTGGTTTTATCTCTGGATATTGCTCCCGTTCGAATTGG
AAGGCGTGCCTGTACTGCATAAATTAAAATTCGATGGACGGAGGAGGATC
TGGGGTGTCTTACGCAGTGTGTACCGGCAGGAGGTGATGATTATCGGAGG
AGCAGGAGCAGGAGCAGGAAAAGTAGCAGCAGCGGGGAAAATGGCAGGGG
CACGGGGAGAAGCAGGAGGAGGGGAGTCAAGAGAAGGTCCACAGCAAGAG
ATGCAGCAGCCGGAAGGAGGAGACGAAGAAAAGTCGATTCATCCCCCCGT
GTCCTCCACTTCCTCGTCCTTCGCTTCAGAAAAGAGCAACACAGAATTGA
AGCGGCGATCGGGAGGGGGAAGGAAAGAAATGGGTGTGTTACGGAGGGAG
GAGGAAGAAATGGAGGGAGAAGAGGGGGAGGGGGAAGTCAAAGGAGAGGT
CTTGGGAGGTGGGGGAGGAAGATGA back to topCoding sequence (CDS) from alignment at chr7:337192..339066+ >NO07G01040.1 ID=NO07G01040.1|Name=NO07G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=1875bp|location=Sequence derived from alignment at chr7:337192..339066+ (Nannochloropsis oceanica) ATGGAGGAAGAGTCAGCGGCCTCTTTCTTTCACACGTCCGAAGATGACCC GTCCTCTTCCTCCATCTGCTCTTCCGCATCCTCCTCGTCCTGCCCATCCT CCTCCAGCGGCGCGTACGAATGGGGCACCTGGCCATGGATCTGTGAACAT GTACATCTCGTCCTTGCCTTTTCCGAGACGGCGTTTTTACTGCTTAAAGA AGCCTTGGGCTTGTCGTGGGTTGCCATTTGTGCTTGGTCCCGCCTCGGCA TTGTTCTAAGTCGCCCTGTCCTCCGCCTCCTCTTCTACTTGTGGTCGTTG GCTTTGCCATATATGCAGTGGTTCGCCCGCACGTTTTTCAATCACTTGAA GGAGCAAGAGCCGGAAGTGTTGATTGGGTACGCATGCTTTTTGGGTGCGC TTATTGGTTTCCTCCTCATCAGGCGGTTGCTTCGGCGGCTGCGTGTCTGG GACCGATGCCGCGCATTTGTCACTCGGAAAGTCGTTATGGTTGAATATCG ATACCACCAAGCACGCAATAAGCTCCATGCGTACTCCCAACGGGCAGCCG AGGCATTGCCGCACGTCTTGTTCGCTTTGGGGAGCGTGGGTGCCGTGTGG TTGTTCCCAAAAGCAACCCATATGCTATCCCAAGAGCTGGTCTTTCACAT CTTGTTGTTGTATTTGCCCGCACTAGCAACCTTCTATGCCGTCGAGTGCT CCCCTTTCCCGCCCTCGCCGCCATCTACTGCTACTGCTACTTCTCTAAGA AGCAAGCAAGGCAAGCCACCCTCCTACCCCTCCTCTTCTACCCCCGCCAC TACCCCCCCCTGGCAAGAGCAAACCAAGCACACCAAGCGCCTCAACGAAT GGCTCTCCTACTGGATCATGACCTCCTTAGTACTGACGTTTGGTAACCTC CTCGAACAATTGTACCTGCGGTGGTTCACCAGACTCCTCCCCTTCAGTAA CGAAGCTTTCCTTTTCTTCCTCCTCTGGCTCCATCTTCCTCAAGGTGGCC ATGCTCTGCTCAAACAGCACCTCCTTCCCTTCCTCCGCCGGCACCTTGGA GGCATCCTATACTTCCAGAAGAAACGGGACTCATTTATGAAGCACGTGCT AAGTGTCGCTGTCTTCACTCGTCTCCTGAGCACAGCCACTGCTGACCTTC TCGCTCTTCATGTCGATGAGATGTTTCTCGTTCTCCCTGCTGCGGTTCTG TCTCTCTCTCCCTTGGCAGGTTGGGGACTGCTATTCATTTCTTTGATTTT TCCAGGTTTTGCTTCGATTCGTGCACTGGGAAGCAGTGGTGGTAATGGTA TTAGTAAAGGAGGAGTGCATTACAGCCCCATCCCTTGGTTGAAGTATTGG GTGGTGTACGCGGTTTCTCACATCTTGTTTCAGCTTATGCCGTTTTGGTC GGTCATTCAAATGTGGTTTTATCTCTGGATATTGCTCCCGTTCGAATTGG AAGGCGTGCCTGTACTGCATAAATTAAAATTCGATGGACGGAGGAGGATC TGGGGTGTCTTACGCAGTGTGTACCGGCAGGAGGTGATGATTATCGGAGG AGCAGGAGCAGGAGCAGGAAAAGTAGCAGCAGCGGGGAAAATGGCAGGGG CACGGGGAGAAGCAGGAGGAGGGGAGTCAAGAGAAGGTCCACAGCAAGAG ATGCAGCAGCCGGAAGGAGGAGACGAAGAAAAGTCGATTCATCCCCCCGT GTCCTCCACTTCCTCGTCCTTCGCTTCAGAAAAGAGCAACACAGAATTGA AGCGGCGATCGGGAGGGGGAAGGAAAGAAATGGGTGTGTTACGGAGGGAG GAGGAAGAAATGGAGGGAGAAGAGGGGGAGGGGGAAGTCAAAGGAGAGGT CTTGGGAGGTGGGGGAGGAAGATGA back to top
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