NO07G01000, NO07G01000 (gene) Nannochloropsis oceanica

Overview
NameNO07G01000
Unique NameNO07G01000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1723
Alignment locationchr7:319393..321115 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA-binding SAP
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:319393..321115 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
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BLAST of NO07G01000 vs. NCBI_GenBank
Match: EWM27275.1 (DNA-binding SAP [Nannochloropsis gaditana])

HSP 1 Score: 73.6 bits (179), Expect = 1.700e-9
Identity = 104/401 (25.94%), Postives = 141/401 (35.16%), Query Frame = 0 
Query:    3 NSYATLSYRDLRKLCKTHGLMCKGKTAELQARLVAHAAAEQGGKGDLSAAAPQAGTDSDEGEAAQQKKREDNLRGKVEQLGMVMDGGIEKAGHADKETVAAPTAFPPRAPREDMFSDMPDLVAQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKGFRRTAINVIKRKAESGGDA--------PAASTTKNGSNTT--AAESHLPKKVPKVV-SMLRKPSPASASATQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRTSNKIIPLPSGPRSFGPGTFSLKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPAPCDPSKPRPKPTYKPHTGKLPPYKDTRNVSLFSPCPVMPARKASVPKQQRGPSTTTITSNKYICNSGITEK 393
            N+YATLSYR+L+KLCK HGL CKGK  EL+ARL+   A E            + G    EG +   KK              + +G  ++    D+  V+                DMPDL+ +P                               G    + N      ++ GDA        PA  +T+  S T   A+E      +P      L K S   A+   G                                    SS   +K     S  R  G  T S+                                      +  + +K RPK TYKPHTG+LPPY++TR + LFSP PVMP+RK  VPK QR P+     S K+ C+    +K
Sbjct:    2 NTYATLSYRELQKLCKAHGLTCKGKADELRARLI---AVEXXXXXXXXXPTQERG----EGSSNNDKK-------------TIANGKAQRKSKDDEVDVSV---------------DMPDLIDRPSNAVTWEVELEQGPERFVGRKRQFPTEDSQAGDSDKSSN---SSMDAQGDADSTSEQCEPAMVSTQERSETVPHASEKSQTSGIPATEREPLLKSSTTRATKIHG-------------------TSRLTTSKGALTTREQTSSNVGSKKQAPVSASRPLGLCT-SINRLGSCEERHLLSSAKMAPNKPALKISGCALL------STSEQAKSRPKITYKPHTGRLPPYQETRCIPLFSPYPVMPSRKPGVPKNQRRPTPLPDNSAKHGCDMASKKK 338
The following BLAST results are available for this feature:
BLAST of NO07G01000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27275.11.700e-925.94DNA-binding SAP [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000779NSK000779Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01000.1NO07G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G01000.2NO07G01000.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580284gene_2416Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100080g18gene3274Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01000.1NO07G01000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G01000.2NO07G01000.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01000 ID=NO07G01000|Name=NO07G01000|organism=Nannochloropsis oceanica|type=gene|length=1723bp
CCTTATTTCCACTTCCACTACCCCTTGAATTTCCCTTCAACAGACCAAGC
ATCATGGAAAATTCTTACGCCACCCTGAGTTACCGCGACTTACGGAAACT
GTGTAAGACACATGGCCTAATGTGCAAGGGCAAGACAGCGGAGTTGCAGG
CGCGTCTGGTGGCGCATGCGGCAGCAGAGCAGGGGGGGAAAGGAGACCTT
TCTGCCGCTGCACCGCAAGCAGGAACAGACAGTGATGAAGGCGAGGCAGC
GCAGCAGAAGAAGCGGGAGGATAATTTGAGGGGAAAGGTGGAACAATTAG
GCATGGTCATGGATGGTGGAATCGAAAAAGCTGGGCATGCAGACAAGGAG
ACCGTCGCTGCTCCGACAGCTTTTCCTCCTCGAGCCCCTAGGGAAGACAT
GTTCTCAGACATGCCTGACCTCGTGGCCCAGCCTACAGCAGCAGCAGCAG
CAGCAGCAGCAACAACAACAACAACAACAACAGCACTGGAGGCCGTCTCG
GAAATTCAAGAGGCAAAGGAGATGAAAGGCTTCAGGCGCACTGCCATAAA
TGTGATCAAGCGCAAGGCTGAATCGGGCGGGGACGCCCCTGCTGCCTCCA
CCACGAAGAATGGCAGCAACACGACGGCAGCGGAGAGCCATCTCCCAAAG
AAGGTGCCCAAAGTTGTCTCCATGCTTCGTAAGCCCTCGCCTGCCTCTGC
ATCTGCCACACAAGGCATTGCGGCCATGGCAGGAGGAGCAAGTGCAGGAG
CAGGAAGGGCAACGACGACGGCTGCCGCTCCTGTTAGCAGTACCAAGAAG
GCCACGACGATGAAGACAATTTCCTCGAGTCGCACCAGTAACAAGATAgt
aagtggaccttaattaaaccccaacctatcgctttatgcctgcctcgaag
ccataccttattttttccacaaaatccccccttaaatccctccgctttag
ATTCCCCTTCCCTCCGGCCCGCGGTCCTTTGGCCCTGGCACATTTTCCCT
GAAGAATAACAGTTGCAACAGCAGCGGTCACCATAAGGCCGCCGCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCAAGACTACAATTATCAAGGCTTCTGCT
GCTTCTGCTGATCCTGCACCCTGTGACCCCTCCAAGCCCCGACCAAAGCC
CACCTACAAACCTCATACTGGCAAGCTCCCCCCTTACAAAGGTAAGATAA
CCTTCTCGTCTAACTCCCACTAAATGTCTGGGAACAGTAGAGGCACTTAG
GAGAGGAGACTGATCATTGATGCACTCGAACGCCGATTCACGATGTCATC
TGAACAATAATGAAAGCTTCTTCTCAACGGGAAATTCAAAAGCTTCTTCT
TGGCGTTCGTCATTATATTGATAAGGTTTTATCAGCGATCGTGATCTCAC
ACATTTAACGAATGAACAACACATTAGACACACGGAACGTCTCTCTGTTC
TCGCCGTGTCCTGTTATGCCCGCCCGCAAGGCGAGTGTGCCCAAGCAACA
GCGAGGACCCTCCACCACGACCATCACTTCCAACAAGTACATTTGCAATA
GTGGCATTACTGAAAAATGCACCAACATCCATGGCAAAAACAAGGAAAAT
AACAAGGCCGGGTCCACCACAAGCTACTGAAGGTGTAGAGGAGGGGGTAG
GAGGTTAATTTTGATCGTCGATGCGGGTACAAACCCAAGAGAAACAAAGA
AACCAGGCACACGTCACGGGCTT
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protein sequence of NO07G01000.1

>NO07G01000.1-protein ID=NO07G01000.1-protein|Name=NO07G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MENSYATLSYRDLRKLCKTHGLMCKGKTAELQARLVAHAAAEQGGKGDLS
AAAPQAGTDSDEGEAAQQKKREDNLRGKVEQLGMVMDGGIEKAGHADKET
VAAPTAFPPRAPREDMFSDMPDLVAQPTAAAAAAAATTTTTTTALEAVSE
IQEAKEMKGFRRTAINVIKRKAESGGDAPAASTTKNGSNTTAAESHLPKK
VPKVVSMLRKPSPASASATQGIAAMAGGASAGAGRATTTAAAPVSSTKKA
TTMKTISSSRTSNKIIPLPSGPRSFGPGTFSLKNNSCNSSGHHKAAASSS
SSSSSSKTTIIKASAASADPAPCDPSKPRPKPTYKPHTGKLPPYKDTRNV
SLFSPCPVMPARKASVPKQQRGPSTTTITSNKYICNSGITEKCTNIHGKN
KENNKAGSTTSY*
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protein sequence of NO07G01000.2

>NO07G01000.2-protein ID=NO07G01000.2-protein|Name=NO07G01000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MENSYATLSYRDLRKLCKTHGLMCKGKTAELQARLVAHAAAEQGGKGDLS
AAAPQAGTDSDEGEAAQQKKREDNLRGKVEQLGMVMDGGIEKAGHADKET
VAAPTAFPPRAPREDMFSDMPDLVAQPTAAAAAAAATTTTTTTALEAVSE
IQEAKEMKGFRRTAINVIKRKAESGGDAPAASTTKNGSNTTAAESHLPKK
VPKVVSMLRKPSPASASATQGIAAMAGGASAGAGRATTTAAAPVSSTKKA
TTMKTISSSRTSNKIIPLPSGPRSFGPGTFSLKNNSCNSSGHHKAAASSS
SSSSSSKTTIIKASAASADPAPCDPSKPRPKPTYKPHTGKLPPYKGKITF
SSNSH*
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Synonyms
Publications