NO07G00790, NO07G00790 (gene) Nannochloropsis oceanica

Overview
NameNO07G00790
Unique NameNO07G00790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1477
Alignment locationchr7:267632..269108 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:267632..269108 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007317UPF0363
Homology
BLAST of NO07G00790 vs. NCBI_GenBank
Match: EWM27335.1 (hypothetical protein Naga_101019g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 277.7 bits (709), Expect = 6.000e-71
Identity = 182/394 (46.19%), Postives = 224/394 (56.85%), Query Frame = 0
Query:    1 MPRRTGQRS--SGSSDDAGSNGQVLRLQQQIRDGETYEALQTTRALFARME------RSGKRGGGGEARAILLKVASTLAEAGEFKSALDLARLYMTXXXXXXXXXXXXXXXXXXXXXXXXXELSAKEARETAAIPSSSLSKTETEEEDHPSWIPHRFATGGRVAMLSLARMLPQGSKERVSLLKGITRWAVEEQXXXXXXXXXXXXXGLALGLELAEAYKDYGDYAQAALKHAQLALGLKEGGRGGARERLAASYVGLLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTXXXXXXXLGSSLAPSPLAHYVSLL-------LDLLEADGGKEGGKEGELFRLLSSRYQPVLRRDPLFEKWVGRIAEVGFGLLPPVNPMQA 380
            MPRRTG+RS  +G+  D+ +     RLQ+ I+DGETYEALQT RALFAR++       +  R  G EAR ++L VA TLAE GE++S LDLARLYM                          E+SA+EA   +    +  +  E  E D P+W  HRF TGGR AMLSLAR+LP  SKERV+LLKG+TRWA EE+              L LGLELA+AY   G++A+AA +H +LA        G   + LAASYV +LE WS +GY GEKDLF+ARA +H L +S   +   A+ FARAL+T           L  SPL HYV L+                       E+F+LLSSRYQP LRRDP  EK VGRI E GFGL P  NPMQA
Sbjct:    1 MPRRTGKRSLVAGADGDSNTCSSTARLQRMIQDGETYEALQTARALFARLDGAPVSAANPGRKKGAEARVMVLHVARTLAEVGEYQSVLDLARLYMA-----NNASLRKQAMPTGHTVPQVEEMSAEEAGTWSPSGDTKEAVEEGGEGDDPAWEAHRFHTGGRTAMLSLARLLPPASKERVALLKGLTRWAAEEEEAEEGGKEV-----LELGLELAKAYSARGEWARAAQQHGELA----RQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTS-SYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVXXXXXXXXXXXXXXXXXXXXXXXEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQA 379          
BLAST of NO07G00790 vs. NCBI_GenBank
Match: GBG29212.1 (Golgi to ER traffic protein 4-like [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 68.9 bits (167), Expect = 4.200e-8
Identity = 42/133 (31.58%), Postives = 66/133 (49.62%), Query Frame = 0
Query:  248 YVGLLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTXXXXXXXLGSSLAPSPLAHYVSLLLDLLEADGGKEGGKEGELFRLLSSRYQPVLRRDPLFEKWVGRIAEVGFGLLPPVNPMQAL 381
            +   L  W+  GY+GE+DLF+ARA + +LA        +       LL          + L  +PLAH+V  LL  +E D          LF++L  +YQP ++RD  F+ ++ RI+E+ FG+       QA+
Sbjct:  173 FATFLYQWTSMGYQGERDLFLARAVLQLLALENLKDANTLYDTFVGLLAMKK------TPLQDTPLAHFVKFLLRAVECDA-------YPLFKMLCEKYQPSIQRDANFQMYLDRISEMYFGIKAQKRGFQAI 292          
BLAST of NO07G00790 vs. NCBI_GenBank
Match: CCI40475.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 66.6 bits (161), Expect = 2.100e-7
Identity = 59/212 (27.83%), Postives = 86/212 (40.57%), Query Frame = 0
Query:  169 SKERVSLLKGITRWAVEEQXXXXXXXXXXXXXGLALGLELAEAYKDYGDYAQAALKHAQLALGLKEGGRGGARERLAASYVGLLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTXXXXXXXLGSSLAPSPLAHYVSLLLDLLEADGGKEGGKEGELFRLLSSRYQPVLRRDPLFEKWVGRIAEVGFGLLPPVNPMQAL 381
            SKE  S L+   +W+  E                 + L LA AY   GD+ QAA KH   A   +E             +   L HWS +GY  E DL++AR  + +L           +  A  L         L +    +PL H++  LL  LE D          L++LL  RY   L RD  FEK++ RI    +G+ P  + + ++
Sbjct:  143 SKELASFLQNAVKWSAAEGTRKHGHP--------QIQLFLARAYFRGGDHKQAA-KHYLHAEKPEE-------------FADFLLHWSNEGYPSEVDLYIARGVLQLLC-------LENLKDANKLFETFHVKAKLENVTLETPLCHFIRFLLVTLERDA-------LPLYQLLQDRYAAALARDKSFEKYLERIGVNYYGVQPQQSGLNSI 318          
BLAST of NO07G00790 vs. NCBI_GenBank
Match: NP_001098381.1 (Golgi to ER traffic protein 4 homolog [Oryzias latipes] >A1Z3X3.1 RecName: Full=Golgi to ER traffic protein 4 homolog; AltName: Full=Conserved edge expressed protein >ABM53480.1 conserved edge expressed protein [Oryzias latipes])

HSP 1 Score: 66.2 bits (160), Expect = 2.700e-7
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 0
Query:  251 LLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTXXXXXXXLGSSLAPSPLAHYVSLLLDLLEADGGKEGGKEGELFRLLSSRYQPVLRRDPLFEKWVGRIAEVGFGLLPPVNP 377
            L+E+W+  GY+ E DLFVA+A +  L     SS  ++V F  +  T        G      PL +++  L  LL  DGGK       +F +L  +YQP L+RDP++ +++ RI ++ FG+ P  +P
Sbjct:  174 LVEYWASRGYRNEVDLFVAQAVLQFLCLKNKSS--ASVVF--STYTEKHPSIQKGPPFV-QPLLNFIWFL--LLAVDGGKL-----TVFTVLCEQYQPSLKRDPMYNEYLDRIGQLFFGVPPKQSP 287          
The following BLAST results are available for this feature:
BLAST of NO07G00790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM27335.16.000e-7146.19hypothetical protein Naga_101019g2, partial [Nanno... [more]
GBG29212.14.200e-831.58Golgi to ER traffic protein 4-like [Aurantiochytri... [more]
CCI40475.12.100e-727.83unnamed protein product [Albugo candida][more]
NP_001098381.12.700e-734.13Golgi to ER traffic protein 4 homolog [Oryzias lat... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000841NSK000841Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00790.1NO07G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669009gene_2396Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101019g2gene3224Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00790.1NO07G00790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00790 ID=NO07G00790|Name=NO07G00790|organism=Nannochloropsis oceanica|type=gene|length=1477bp
ATGCCTCGTCGAACCGGTCAACGCAGCAGTGGTAGCAGCGATGATGCTGG
GTCGAATGGACAGGTCTTGCGCTTGCAACAGCAGATTAGGGATGGGGAGA
CCTACGAGGCTCTCCAGACGACACGGGCTCTCTTTGCCCGGATGGAACGC
AGTGGCAAACGTGGAGGCGGAGGGGAGGCACGTGCGATCCTTTTGAAAGT
GGCCAGTACACTGGCCGAGGCGGGGGAGTTCAAGTCGGCCTTGGATTTGG
CGCGTTTGTACATGACGAATAATAAGAGGGAAAATGGTTCGACTGCTGCT
GCTGGTGGTGGTGGTGCCGCTGCGAGCGGTAATCGAGTAGAAGAATTGAG
TGCCAAAGAAGCTAGAGAAACTGCCGCCATACCTTCTTCTTCCTTATCAA
AAACGGAAACAGAAGAGGAGGATCACCCTTCCTGGATACCCCATCGCTTT
GCAACGGGGGGACGGGTGGCCATGTTGTCACTTGCGCGGATGCTGCCACA
AGGATCGAAGGAACGTGTGTCGTTGCTAAAAGGCATCACGCGGTGGGCCG
TGGAGGAACAGAAGCAGCAGCAGCTGGAGGAAGGTGAGGAAGAAGAGGAG
GGTTTGGCGCTGGGGTTGGAGCTTGCGGAGGCCTACAAAGATTATGGAGA
CTATGCACAGGCGGCTTTGAAGCACGCGCAACTTGCCTTGGGCTTGAAGG
AGGGAGGGAGGGGGGGAGCGAGGGAGAGACTGGCGGCATCGTATGTGGGG
TTACTGGAGCATTGGAGCGAGGACGGGTACAAGGGGGAGAAAGACTTGTT
TGTAGCTCGAGCAGCTATGCACGTCCTGGCATCTTCCCCCCCTTCCTCCT
TCAAGAGTGCTGTGGCATTTGCTCGTGCCCTACTCACTGCTGCTGCCGCC
TCCTCCTCTCTTGGCTCTTCCCTCGCTCCTTCTCCCTTGGCGCATTACGT
GTCTTTGCTGTTGGATCTTTTGGAGGCGGATGGAGGGAAGGAAGGAGGGA
AGGAGGGGGAGTTGTTCCGGTTGTTGTCGTCGAGGTACCAGCCTGTGTTG
AGGCGGGATCCTTTGTTTGAGAAGTGGGTGGGGAGAATAGCAGAGGTGGG
TTTTGGACTGTTGCCGCCCGTGAACCCGATGCAGGCGTTGATGAATAGTA
TGATGGGAGGCCTAGGAGGGGGAGGGGGAGGGGCAGGGATGGGCAGTTTG
CTTGGGAACATGCTGGGGGGAGGGGCGGGGGGAGGAGGGGGGTTATTGGG
GCAATTGGGCGGATTGGGATTCTAGAAGGAGAAGGACTGAGTGGGAGGGA
GGGAGGGACGGTCGAAGGCAAAGAGGCCTGGTTTCCCAGCAACAGCAAGA
AAGGAGATATCGTAGATAATGTGCGTGCATGATTCTGCTTTCTCGTCACA
CTGGTTTCTGTGTCATCTATTGCTTGCTCCTATTTTATTCATTTAAAGAG
ACTCCGTGAAATGCCAAACAATTACTT
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protein sequence of NO07G00790.1

>NO07G00790.1-protein ID=NO07G00790.1-protein|Name=NO07G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MPRRTGQRSSGSSDDAGSNGQVLRLQQQIRDGETYEALQTTRALFARMER
SGKRGGGGEARAILLKVASTLAEAGEFKSALDLARLYMTNNKRENGSTAA
AGGGGAAASGNRVEELSAKEARETAAIPSSSLSKTETEEEDHPSWIPHRF
ATGGRVAMLSLARMLPQGSKERVSLLKGITRWAVEEQKQQQLEEGEEEEE
GLALGLELAEAYKDYGDYAQAALKHAQLALGLKEGGRGGARERLAASYVG
LLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTAAAA
SSSLGSSLAPSPLAHYVSLLLDLLEADGGKEGGKEGELFRLLSSRYQPVL
RRDPLFEKWVGRIAEVGFGLLPPVNPMQALMNSMMGGLGGGGGGAGMGSL
LGNMLGGGAGGGGGLLGQLGGLGF*
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Synonyms
Publications