NO07G00790, NO07G00790 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G00790 vs. NCBI_GenBank
Match: EWM27335.1 (hypothetical protein Naga_101019g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 277.7 bits (709), Expect = 6.000e-71 Identity = 182/394 (46.19%), Postives = 224/394 (56.85%), Query Frame = 0 Query: 1 MPRRTGQRS--SGSSDDAGSNGQVLRLQQQIRDGETYEALQTTRALFARME------RSGKRGGGGEARAILLKVASTLAEAGEFKSALDLARLYMTXXXXXXXXXXXXXXXXXXXXXXXXXELSAKEARETAAIPSSSLSKTETEEEDHPSWIPHRFATGGRVAMLSLARMLPQGSKERVSLLKGITRWAVEEQXXXXXXXXXXXXXGLALGLELAEAYKDYGDYAQAALKHAQLALGLKEGGRGGARERLAASYVGLLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTXXXXXXXLGSSLAPSPLAHYVSLL-------LDLLEADGGKEGGKEGELFRLLSSRYQPVLRRDPLFEKWVGRIAEVGFGLLPPVNPMQA 380 MPRRTG+RS +G+ D+ + RLQ+ I+DGETYEALQT RALFAR++ + R G EAR ++L VA TLAE GE++S LDLARLYM E+SA+EA + + + E E D P+W HRF TGGR AMLSLAR+LP SKERV+LLKG+TRWA EE+ L LGLELA+AY G++A+AA +H +LA G + LAASYV +LE WS +GY GEKDLF+ARA +H L +S + A+ FARAL+T L SPL HYV L+ E+F+LLSSRYQP LRRDP EK VGRI E GFGL P NPMQA Sbjct: 1 MPRRTGKRSLVAGADGDSNTCSSTARLQRMIQDGETYEALQTARALFARLDGAPVSAANPGRKKGAEARVMVLHVARTLAEVGEYQSVLDLARLYMA-----NNASLRKQAMPTGHTVPQVEEMSAEEAGTWSPSGDTKEAVEEGGEGDDPAWEAHRFHTGGRTAMLSLARLLPPASKERVALLKGLTRWAAEEEEAEEGGKEV-----LELGLELAKAYSARGEWARAAQQHGELA----RQCTGPDADTLAASYVQVLEAWSAEGYAGEKDLFLARAVLHGLGTS-SYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVXXXXXXXXXXXXXXXXXXXXXXXEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQA 379
BLAST of NO07G00790 vs. NCBI_GenBank
Match: GBG29212.1 (Golgi to ER traffic protein 4-like [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 68.9 bits (167), Expect = 4.200e-8 Identity = 42/133 (31.58%), Postives = 66/133 (49.62%), Query Frame = 0 Query: 248 YVGLLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTXXXXXXXLGSSLAPSPLAHYVSLLLDLLEADGGKEGGKEGELFRLLSSRYQPVLRRDPLFEKWVGRIAEVGFGLLPPVNPMQAL 381 + L W+ GY+GE+DLF+ARA + +LA + LL + L +PLAH+V LL +E D LF++L +YQP ++RD F+ ++ RI+E+ FG+ QA+ Sbjct: 173 FATFLYQWTSMGYQGERDLFLARAVLQLLALENLKDANTLYDTFVGLLAMKK------TPLQDTPLAHFVKFLLRAVECDA-------YPLFKMLCEKYQPSIQRDANFQMYLDRISEMYFGIKAQKRGFQAI 292
BLAST of NO07G00790 vs. NCBI_GenBank
Match: CCI40475.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 66.6 bits (161), Expect = 2.100e-7 Identity = 59/212 (27.83%), Postives = 86/212 (40.57%), Query Frame = 0 Query: 169 SKERVSLLKGITRWAVEEQXXXXXXXXXXXXXGLALGLELAEAYKDYGDYAQAALKHAQLALGLKEGGRGGARERLAASYVGLLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTXXXXXXXLGSSLAPSPLAHYVSLLLDLLEADGGKEGGKEGELFRLLSSRYQPVLRRDPLFEKWVGRIAEVGFGLLPPVNPMQAL 381 SKE S L+ +W+ E + L LA AY GD+ QAA KH A +E + L HWS +GY E DL++AR + +L + A L L + +PL H++ LL LE D L++LL RY L RD FEK++ RI +G+ P + + ++ Sbjct: 143 SKELASFLQNAVKWSAAEGTRKHGHP--------QIQLFLARAYFRGGDHKQAA-KHYLHAEKPEE-------------FADFLLHWSNEGYPSEVDLYIARGVLQLLC-------LENLKDANKLFETFHVKAKLENVTLETPLCHFIRFLLVTLERDA-------LPLYQLLQDRYAAALARDKSFEKYLERIGVNYYGVQPQQSGLNSI 318
BLAST of NO07G00790 vs. NCBI_GenBank
Match: NP_001098381.1 (Golgi to ER traffic protein 4 homolog [Oryzias latipes] >A1Z3X3.1 RecName: Full=Golgi to ER traffic protein 4 homolog; AltName: Full=Conserved edge expressed protein >ABM53480.1 conserved edge expressed protein [Oryzias latipes]) HSP 1 Score: 66.2 bits (160), Expect = 2.700e-7 Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 0 Query: 251 LLEHWSEDGYKGEKDLFVARAAMHVLASSPPSSFKSAVAFARALLTXXXXXXXLGSSLAPSPLAHYVSLLLDLLEADGGKEGGKEGELFRLLSSRYQPVLRRDPLFEKWVGRIAEVGFGLLPPVNP 377 L+E+W+ GY+ E DLFVA+A + L SS ++V F + T G PL +++ L LL DGGK +F +L +YQP L+RDP++ +++ RI ++ FG+ P +P Sbjct: 174 LVEYWASRGYRNEVDLFVAQAVLQFLCLKNKSS--ASVVF--STYTEKHPSIQKGPPFV-QPLLNFIWFL--LLAVDGGKL-----TVFTVLCEQYQPSLKRDPMYNEYLDRIGQLFFGVPPKQSP 287 The following BLAST results are available for this feature:
BLAST of NO07G00790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G00790 ID=NO07G00790|Name=NO07G00790|organism=Nannochloropsis oceanica|type=gene|length=1477bpback to top protein sequence of NO07G00790.1 >NO07G00790.1-protein ID=NO07G00790.1-protein|Name=NO07G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bpback to top Synonyms
Publications
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