NO07G00640, NO07G00640 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G00640 vs. NCBI_GenBank
Match: PIX90188.1 (tRNA 2-thiouridine(34) synthase MnmA [Candidatus Moranbacteria bacterium CG_4_10_14_3_um_filter_45_9]) HSP 1 Score: 263.1 bits (671), Expect = 1.800e-66 Identity = 126/211 (59.72%), Postives = 154/211 (72.99%), Query Frame = 0 Query: 278 EVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489 ++A+L+SGGVDSSVAL LL+ +G++ AFYLKIWLEDEL+ L +CPWE+D Y AVC+QAG VPLE +P QKEYW RVV +TI E K GRTPNPD+LCN+ +KFG FY+ +G RF K+ATGHYAR L ++PD IKDQTYFLS+L Q+QL+RA FPIG YEK E+R +A K +LP RKDSQGICFLGK Sbjct: 2 KIAMLVSGGVDSSVALRLLKAEGHEVTAFYLKIWLEDELSFLGECPWEDDLSYVRAVCEQAG-VPLEIVPFQKEYWERVVVYTIDEVKNGRTPNPDMLCNARIKFGAFYDYIGDRFEKIATGHYARV-------------EEKDGVFLLKKTPDAIKDQTYFLSQLTQKQLSRALFPIGGYEKKEVRKLALKFELPNALRKDSQGICFLGK 198
BLAST of NO07G00640 vs. NCBI_GenBank
Match: OGI26426.1 (tRNA 2-thiouridine(34) synthase MnmA [Candidatus Moranbacteria bacterium RIFCSPHIGHO2_12_FULL_54_9]) HSP 1 Score: 262.7 bits (670), Expect = 2.300e-66 Identity = 128/216 (59.26%), Postives = 156/216 (72.22%), Query Frame = 0 Query: 279 VAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYE-VMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXP-----MRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489 +AVL+SGGVDSSVAL LLQ++G+ AFYLKIWLEDEL+ L +CPWE+D Y AVC+Q G VPLE +P QKEYW RVV +TI E K GRTPNPD+LCN+ +KFG FY+ + GK F+K+ATGHYA+ + P + L SPD +KDQTYFLS+L Q QLT+A FPIG+YEK E+R +AEK LP +RKDSQGICFLGK Sbjct: 3 IAVLVSGGVDSSVALRLLQEEGHTLTAFYLKIWLEDELSFLGECPWEDDLAYVRAVCEQTG-VPLEIVPFQKEYWERVVGYTIAEVKAGRTPNPDMLCNAHIKFGAFYDFIAGKGFDKIATGHYAQVEEVICHSAPDAGTGSRVEPGIAKRVLLKMSPDPVKDQTYFLSQLTQAQLTQALFPIGKYEKREVRKLAEKFALPNAARKDSQGICFLGK 217
BLAST of NO07G00640 vs. NCBI_GenBank
Match: PJA85703.1 (tRNA 2-thiouridine(34) synthase MnmA [Candidatus Moranbacteria bacterium CG_4_9_14_3_um_filter_45_14]) HSP 1 Score: 261.9 bits (668), Expect = 4.000e-66 Identity = 125/211 (59.24%), Postives = 154/211 (72.99%), Query Frame = 0 Query: 278 EVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489 ++A+L+SGGVDSSVAL LL+ +G++ AFYLKIWLEDEL+ L +CPWE+D Y AVC+QAG VPLE +P QKEYW RVV +TI E K GRTPNPD+LCN+ +KFG FY+ +G RF K+ATGHYAR L ++PD IKDQTYFLS+L Q+QL+RA FPIG YEK E+R +A K +LP R+DSQGICFLGK Sbjct: 2 KIAMLVSGGVDSSVALRLLKAEGHEVTAFYLKIWLEDELSFLGECPWEDDLSYVRAVCEQAG-VPLEIVPFQKEYWERVVVYTIDEVKNGRTPNPDMLCNARIKFGAFYDYIGDRFEKIATGHYARV-------------EEKDGVFLLKKTPDAIKDQTYFLSQLTQKQLSRALFPIGGYEKKEVRKLALKFELPNALRRDSQGICFLGK 198
BLAST of NO07G00640 vs. NCBI_GenBank
Match: KKP35559.1 (tRNA-specific 2-thiouridylase MnmA [candidate division TM6 bacterium GW2011_GWF2_32_72]) HSP 1 Score: 260.4 bits (664), Expect = 1.200e-65 Identity = 128/211 (60.66%), Postives = 152/211 (72.04%), Query Frame = 0 Query: 278 EVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489 ++AVL+SGGVDSSVAL LL+ QG+ AFYLKIWLEDEL+ L +CPWEED YA AVC+QAG VPLE I +QKEYW RVV++TI E K GRTPNPDILCN VKFG F++ + F KVATGHYAR L +PD IKDQTYFLS L+Q QL++A FP+GEY K ++R +A++ DLP K RKDSQGICFLGK Sbjct: 2 KIAVLVSGGVDSSVALRLLKDQGHDLTAFYLKIWLEDELSFLGECPWEEDLSYAKAVCEQAG-VPLEVISLQKEYWDRVVSYTISEVKAGRTPNPDILCNQRVKFGAFFDKISPEFEKVATGHYARV-------------EEKDGRYLLKMTPDPIKDQTYFLSHLSQAQLSKALFPLGEYNKGQVRELAQRFDLPNKVRKDSQGICFLGK 198
BLAST of NO07G00640 vs. NCBI_GenBank
Match: PIZ73669.1 (tRNA 2-thiouridine(34) synthase MnmA [Candidatus Peregrinibacteria bacterium CG_4_10_14_0_2_um_filter_43_11]) HSP 1 Score: 260.4 bits (664), Expect = 1.200e-65 Identity = 127/211 (60.19%), Postives = 149/211 (70.62%), Query Frame = 0 Query: 278 EVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489 ++AVL SGGVDSSVAL LL +QGY+ AFYLKIWLEDEL HL CPW ED + +C + G VPL IPMQKEYW R+V +TIQE+K G TPNPD+LCN +KFG FY+ + F KVATGHYA+A L ++PD IKDQTYFLSRLNQ+QL+RA FPIG K E+RA+AEK DLP + RKDSQGICFLGK Sbjct: 2 KIAVLTSGGVDSSVALRLLHEQGYELTAFYLKIWLEDELQHLGDCPWAEDLSFVQKICSRIG-VPLRIIPMQKEYWDRIVQYTIQESKAGCTPNPDVLCNQFIKFGAFYDQIDDSFEKVATGHYAQA-------------EEKEGQFFLRKAPDPIKDQTYFLSRLNQKQLSRALFPIGHLMKSEVRALAEKYDLPNQHRKDSQGICFLGK 198
BLAST of NO07G00640 vs. NCBI_GenBank
Match: OGU63471.1 (tRNA 2-thiouridine(34) synthase MnmA, partial [Ignavibacteria bacterium RBG_16_36_9]) HSP 1 Score: 256.9 bits (655), Expect = 1.300e-64 Identity = 125/211 (59.24%), Postives = 155/211 (73.46%), Query Frame = 0 Query: 278 EVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489 ++A+LLSGGVDSSVAL LL+ +G++ AFYLKIWL+DE + L +CPWEED YA VC+QA NVPLE IP+Q EYW VV++TI E KEGRTPNPDI CNSL+KFG FY+ + K F KVA+GHYA V S L SPD +KDQTYFL+ L Q+QL+RA FPIG++ K EIR +AE+ +LPT +R+DSQGICFLG+ Sbjct: 2 KIAILLSGGVDSSVALRLLKDEGHQITAFYLKIWLQDEFSFLGECPWEEDLKYAHGVCEQA-NVPLEVIPLQTEYWDNVVSYTITEIKEGRTPNPDIFCNSLIKFGEFYDKIDKSFEKVASGHYANVVNS-------------DSEYLLKMSPDPVKDQTYFLAYLTQQQLSRAMFPIGKFRKSEIRNLAEQYNLPTMARRDSQGICFLGQ 198
BLAST of NO07G00640 vs. NCBI_GenBank
Match: OGB83855.1 (tRNA 2-thiouridine(34) synthase MnmA [candidate division TM6 bacterium RIFCSPHIGHO2_12_FULL_32_22]) HSP 1 Score: 253.8 bits (647), Expect = 1.100e-63 Identity = 125/211 (59.24%), Postives = 147/211 (69.67%), Query Frame = 0 Query: 278 EVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489 ++AVL+SGGVDSSVAL LL++QGY AFY+KIWLEDELA L CPW+ED + VC Q NVPLE I +QKEYW +VV +TI E K GRTPNPDILCNS +KFG F E +G ++KVATGHYA L SPD +KDQTYFLS L QEQL++ FPIG EK+E+R +A+K DLP K RKDSQGICFLGK Sbjct: 2 KIAVLVSGGVDSSVALRLLREQGYDLTAFYIKIWLEDELAFLGNCPWQEDLYFVEKVCAQV-NVPLEVISLQKEYWEKVVQYTISEVKSGRTPNPDILCNSRIKFGTFLEKIGIDYDKVATGHYA-------------LIENLDNRFNLKMSPDLVKDQTYFLSHLTQEQLSKVMFPIGHLEKNEVRELAQKFDLPNKDRKDSQGICFLGK 198
BLAST of NO07G00640 vs. NCBI_GenBank
Match: KOO23799.1 (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 253.4 bits (646), Expect = 1.400e-63 Identity = 132/226 (58.41%), Postives = 154/226 (68.14%), Query Frame = 0 Query: 268 PLLTHSFASDEVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHL--NQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVP--SVXXXXXXXXXXXXXXPM-RLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489 P L A +EVAVLLSGGVDSSVALH L G++ RAFYL+IWLEDE AH CPWEEDW Y AVC+QAG VPLEA+ +QKEY VV + + EA GRTPNPDI+CNS +KFGVF++ +G F VA+GHYAR P S PM L+RS D KDQTYFLS+L QEQL+ A FPIG K E+RA A L LP ++RKDSQGICFLG+ Sbjct: 58 PQLLWPAAEEEVAVLLSGGVDSSVALHQLLAAGHRCRAFYLRIWLEDEQAHAARGDCPWEEDWAYCEAVCEQAG-VPLEAVSLQKEYQEHVVGYLVAEAAAGRTPNPDIMCNSRIKFGVFHDRVGCHFGHVASGHYARTAPTRSTGSRATVPFSSAGGKPMVELLRSADAHKDQTYFLSQLRQEQLSSAIFPIGGMSKPEVRAAAHALHLPNRARKDSQGICFLGQ 282
BLAST of NO07G00640 vs. NCBI_GenBank
Match: WP_014561596.1 (tRNA 2-thiouridine(34) synthase MnmA [Ignavibacterium album] >AFH50455.1 Putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Ignavibacterium album JCM 16511]) HSP 1 Score: 251.5 bits (641), Expect = 5.400e-63 Identity = 125/211 (59.24%), Postives = 149/211 (70.62%), Query Frame = 0 Query: 278 EVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489 +VAVLLSGGVDSSVAL LL+ + + AFYLKIWL+DE + L CPWEED +A+AVCKQA NVPLE +P+Q EYW VV++TI E KEGRTPNPD+ CN L+KFG FY + K F KVA+GHYAR S L SPD IKDQTYFL+ L QEQL+RA FPIG++ K +IRA+A+ LP RKDSQGICFLG+ Sbjct: 2 KVAVLLSGGVDSSVALRLLKDEEHDVTAFYLKIWLQDEFSFLGDCPWEEDLNFATAVCKQA-NVPLEVLPLQTEYWENVVSYTIAEIKEGRTPNPDMFCNRLIKFGEFYNKIDKSFEKVASGHYARVEKS-------------DNKYLLKTSPDPIKDQTYFLAYLTQEQLSRALFPIGKFTKKQIRALAKNYQLPNMERKDSQGICFLGR 198
BLAST of NO07G00640 vs. NCBI_GenBank
Match: GAX29580.1 (tRNA-uridine 2-sulfurtransferase [Fistulifera solaris]) HSP 1 Score: 251.5 bits (641), Expect = 5.400e-63 Identity = 147/371 (39.62%), Postives = 213/371 (57.41%), Query Frame = 0 Query: 130 RVPGCVSVVHMKVTLSENLSQV-------WVDGTSDARVSYGLVALVSQGLSGASPEEVLEIDPTAVATALGLKGGMMQKAPGRQNGLSNIIKTVQEEVKARMKEAAAPEGFSTIINASNTAPSXXXXXXXXXXXXXXXXXXXQIPLLTHSFASDEVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHL-NQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVM----GKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489 +VPGC + VH+++ L+ + S + GT+DA VS GLVA+++ + S + + +I ++ LGL+ +PGR +G++++ + + + +++ A++ TI + PS VA+LLSGGVDSSVAL LL QQ Y+ AFYLKIWL+DE AHL CPWEEDW VC+QA +VPL AI +Q+EY RVV + +++A GRTPNPDILCNS +KFG FY+V+ ++F+ +ATGHYAR + L R+PD IKDQ+YFL L QEQL + FP+G EK ++R +A++ +LP + R DSQG+CFLG+ Sbjct: 41 KVPGCTANVHIQLVLTSDSSTTRNSRTIQSLQGTADALVSQGLVAVIASCVEQQSEDTIGQISAESITARLGLQ---QHLSPGRNDGVASLWRILHQSLQSSF-PASSTTSAKTI--KYSQQPS--------------------------------VALLLSGGVDSSVALRLLLQQNYRVTAFYLKIWLQDENAHLGGTCPWEEDWKICQQVCEQA-DVPLRAISLQQEYHERVVEYAMEQASLGRTPNPDILCNSRIKFGCFYDVLMSQQSEQFDYIATGHYARV-----------ERDDNGVSVCLFRAPDAIKDQSYFLCTLTQEQLQKTLFPLGHLEKTQVRQLADEFELPNRHRPDSQGLCFLGQ 361 The following BLAST results are available for this feature:
BLAST of NO07G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G00640 ID=NO07G00640|Name=NO07G00640|organism=Nannochloropsis oceanica|type=gene|length=5210bpback to top protein sequence of NO07G00640.2 >NO07G00640.2-protein ID=NO07G00640.2-protein|Name=NO07G00640.2|organism=Nannochloropsis oceanica|type=polypeptide|length=500bpback to top protein sequence of NO07G00640.1 >NO07G00640.1-protein ID=NO07G00640.1-protein|Name=NO07G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=702bpback to top Synonyms
Publications
|