NO07G00640, NO07G00640 (gene) Nannochloropsis oceanica

Overview
NameNO07G00640
Unique NameNO07G00640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5210
Alignment locationchr7:233392..238601 -

Link to JBrowse

Properties
Property NameValue
DescriptionTrna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:233392..238601 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003808Fe-S_metab-assoc_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
BLAST of NO07G00640 vs. NCBI_GenBank
Match: EWM27320.1 (trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 544.3 bits (1401), Expect = 4.000e-151
Identity = 302/509 (59.33%), Postives = 354/509 (69.55%), Query Frame = 0
Query:    3 QLEAFRRDVAAVPRLLPLVLLXXXXLPLTDSFLQLPSAPRGSLSQTRPPPPL-FSSRLASASAHNPQDG--TPSTTLPSGLQELQQALRSLPPDDD-KVKTLYLVSLGDRYAATGARPPSRPSTYPPAVGRRVPGCVSVVHMKVTLSENLSQVWVDGTSDARVSYGLVALVSQGLSGASPEEVLEIDPTAVATALGLKGGMMQKAPGRQNGLSNIIKTVQEEVKARMKEAAAPE-------------------GFSTIINASNTAPSXXXXXXXXXXXXXXXXXXXQIPLLTHSFASDEVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489
            +LEA++    A  R   L LL    L  +  F  LP+AP   L + R   P     R+A++S   P+D   +P   LP GL+  ++ L SLP DD+ K ++LYL+SLGD+YAA  AR      +     GRRVPGCVSVVHM V  S + S V VDG SDAR+SYGLVALV+QGL+G SPE +L ++PT +  ALGL GGMMQ+APGR NGL+NI++TVQ+EV AR+ E+  P+                     +T        P                    Q+PLLTHSF S+EVAVLLSGGVDSSVALHLLQQQGYKP AFYLKIWLEDELAHLNQCPWEEDW +ASAVC+QAGNVPLEA+P+QKEYWA+VVAHTIQEAKEGRTPNPDILCNSLVKFGVFY+VMG+R+ KVATGHYARAVP+                +RLMRSPDRIKDQTYFLSRL QEQL RATFPIG YEKH+IRAMAE+LDLPTK+RKDSQGICFLGK
Sbjct:   66 RLEAWQELGVASMRFSLLTLL--LLLHQSRGFFWLPAAPGLLLERFRGRSPFRVPLRVAASSRGLPEDDPTSPLPILPPGLENFRRLLSSLPTDDESKAQSLYLISLGDQYAAATAR------SIASRGGRRVPGCVSVVHMTVRFSSDGSAVHVDGISDARLSYGLVALVAQGLTGESPETILSLEPTTLPKALGLTGGMMQQAPGRHNGLANIVQTVQDEVLARLHESRVPDFQGERGAREAILAAPAERPMLTTAGTKEFAVPVAVDPSHAAPTPAISFPTPAQLPLLTHSFPSEEVAVLLSGGVDSSVALHLLQQQGYKPHAFYLKIWLEDELAHLNQCPWEEDWSFASAVCRQAGNVPLEALPLQKEYWAQVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYDVMGRRYPKVATGHYARAVPAAGGKEGEGL-------VRLMRSPDRIKDQTYFLSRLTQEQLARATFPIGGYEKHQIRAMAERLDLPTKTRKDSQGICFLGK 559          
BLAST of NO07G00640 vs. NCBI_GenBank
Match: CEM13165.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 313.2 bits (801), Expect = 1.500e-81
Identity = 189/450 (42.00%), Postives = 254/450 (56.44%), Query Frame = 0
Query:   47 QTRPPPPLFSSRLASASAHNPQDGTPSTT----LPSGLQELQQALRSLPPDDDKVKTLYLVSLGDRYAATGARPPSRPSTYPPAVGRRVPGCVSVVHMKVTLSENLSQVWVDGTSDARVSYGLVALVSQGLSGASPEEVLEIDPTAVATALGLKGGMMQKAPGRQNGLSNIIKTVQEEVKARMKEAAAPEGFSTIINASNTAPSXXXXXXXXXXXXXXXXXXXQIPLLTHSF----ASDEVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489
            +T+P  P    RL   ++H+  D + ST+    LP   +   ++LR+ P   D+   L+LV LGD       +P   P  +      +VPGCV+ V +  TL ++  +V+  GT+DARVS GLVALV++ L G     VL + P A A +  +   +    PGR NGL ++I T+Q ++ +R+      +   T  +A +                        +PL   SF    A+ EVAVLLSGGVDSSVA  LL  +G + RAFYL+IWLEDEL+HL +CPWEED  +A   C Q   +PLE + +Q  YW  VV +TI EA  GRTPNPD++CN+ VKFG F +  G+ F +VATGHYA+                   P+RL RSPDRIKDQTYFL  L+QEQL  A FPIG ++K  +R +A    LPT SR+DSQGICFLGK
Sbjct:    6 RTKPTRP----RLFDLASHD-DDASTSTSKDPQLPLQAEGALESLRAQPSQKDRF--LHLVRLGDELTRRNQQPGGLPDGFEQR-AEKVPGCVATVKVLATLDDDAVKVY--GTADARVSQGLVALVAEALEGLPAPRVLAVPPDAFAGSTAMASFL---TPGRLNGLRSLIMTIQRQIASRVAGVGEEQESETSASAGSEG----------------------LPLGPPSFVLSEAAGEVAVLLSGGVDSSVAARLLVDRGERVRAFYLRIWLEDELSHLGECPWEEDLRFARDTCDQL-KIPLELVSLQDSYWDSVVRYTISEAAAGRTPNPDVMCNTRVKFGAFCDDHGRHFKRVATGHYAQV-----------RRDQENGPVRLFRSPDRIKDQTYFLCGLSQEQLAMADFPIGTFDKARVRQLARDYSLPTASRRDSQGICFLGK 408          
BLAST of NO07G00640 vs. NCBI_GenBank
Match: EJK57851.1 (hypothetical protein THAOC_22066 [Thalassiosira oceanica])

HSP 1 Score: 296.2 bits (757), Expect = 1.900e-76
Identity = 160/369 (43.36%), Postives = 230/369 (62.33%), Query Frame = 0
Query:  129 RRVPGCVSVVHMKVTLSENLSQVWVDGTSDARVSYGLVALVSQGLSG--ASPEEVLEIDPTAVATALGLKGGMMQKAPGRQNGLSNIIKTVQEEVKARMKEAAA----PEGFSTIINASNTAPSXXXXXXXXXXXXXXXXXXXQIPLLTHSFASDEVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVM---GKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489
            +RVPGC++ V ++ TLS N+  V + G SDA +S GL+A+V+  LSG   +  E+L++D  ++ +ALGLK  +     GR +G++++I+ +Q+++++ + +++     P     I N ++  P+                                VA+LLSGGVDSSVALHLL QQGY   A+YL+IWLEDELAHL +CPWE+D      VC+ AGNVPLE + + KEY  RVV +TI+EA++GRTPNPDI+CNS VKFG F E +   G +F+ VA+GHYAR                     RL R+PD +KDQ+YFL  L Q+QL++  FPIG+Y+K E+R +A + +LP ++R DSQG+CFLGK
Sbjct:  127 QRVPGCIATVLVRATLSRNI--VTISGKSDALLSGGLIAIVADVLSGVDVTAHEILQLDANSLTSALGLKPIL---NTGRNDGVASMIRVIQDQIRSLLGDSSGNTIQPSSRDAIRNETSDKPT--------------------------------VAMLLSGGVDSSVALHLLLQQGYNVTAYYLRIWLEDELAHLGECPWEDDLHVCQEVCEHAGNVPLETVSLGKEYRDRVVQYTIEEAQQGRTPNPDIMCNSRVKFGCFLEYIDQSGMKFDHVASGHYAR-----LEDEPRESSPGTTRAKRLFRAPDPVKDQSYFLCALTQKQLSKVLFPIGQYKKSEVRQLASEFNLPNRNRPDSQGLCFLGK 453          
BLAST of NO07G00640 vs. NCBI_GenBank
Match: XP_005715790.1 (unnamed protein product [Chondrus crispus] >CDF35971.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 286.6 bits (732), Expect = 1.500e-73
Identity = 176/454 (38.77%), Postives = 244/454 (53.74%), Query Frame = 0
Query:   35 LQLPSAPRGSLSQTRPPPPLFSSRLASASAHNPQDGTPSTTLPSGLQELQQALRSLPPDDDKVKTLYLVSLGDRYAATGARPPSRPSTYPPAVGRRVPGCVSVVHMKVTLSENLSQVWVDGTSDARVSYGLVALVSQGLSGASPEEVLEIDPTAVATALGLKGGMMQKAPGRQNGLSNIIKTVQEEVKARMKEAAAPEGFSTIINASNTAPSXXXXXXXXXXXXXXXXXXXQIPLLTHSFASDEVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489
            + +P A +   S       +    L    +  P        LP  L+ +  +L +L  D+ + + + L+ L D   A        PST       RV GC S+ H++V +S++ + V + G SD+ V+ GL+A V  GL G + +EV  + P  +  A GL+G      P R  GL++I+  VQ +V+  M  +      +     S   P                                +VAVLLSGGVDSSVALH +Q+ G +P AFYLKIWLEDELAHL  CPWEED  YA+AVC+QA NV L  +P QK YW  VV++T+ EA+ GRTPNPD++CNS +KFG F+  +G+ +++VATGHYAR   +                  L  S D  KDQTYFL+ L QEQ+  ++FP+G   K+E+R +A+  DLP K+RKDSQGICFLGK
Sbjct:   37 ISIPLATKAKSSHCHGKALVSRKPLLKTESRRPTAERWRCKLPQHLRTIANSLGTL--DEPQARYMRLIHLADSIPAMSDN-ELHPST-------RVSGCTSISHVEVVMSDDRT-VKMRGFSDSMVARGLMAFVILGLDGCTADEVAAVMPLELLEASGLRG---SAGPSRMMGLTSILSYVQNKVE--MLRSGEKRDHA---EKSEKHPMDGRWSGR---------------------QGKDVAVLLSGGVDSSVALHQIQESGARPHAFYLKIWLEDELAHLGSCPWEEDMEYAAAVCQQA-NVKLTDVPFQKAYWDEVVSYTVSEARRGRTPNPDVMCNSRIKFGAFFNRIGRYYDRVATGHYARQTVNPETGL-----------AELRLSADMWKDQTYFLAHLRQEQIAASSFPLGNIPKNEVRELAKAYDLPNKTRKDSQGICFLGK 438          
BLAST of NO07G00640 vs. NCBI_GenBank
Match: XP_005825870.1 (hypothetical protein GUITHDRAFT_76798 [Guillardia theta CCMP2712] >EKX38890.1 hypothetical protein GUITHDRAFT_76798 [Guillardia theta CCMP2712])

HSP 1 Score: 275.0 bits (702), Expect = 4.500e-70
Identity = 131/213 (61.50%), Postives = 162/213 (76.06%), Query Frame = 0
Query:  276 SDEVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489
            S+EVAVLLSGGVDSSVAL L+++QG+KPRAFYL+IWLEDELAHL +CPWEEDW YAS+V +Q   VPLE+I +Q+EYW +VV + I+EAK GRTPNPDI+CNS +KFG+F E +GK F++VA+GHYA                    P RLM SPD++KDQTYFL  L Q+QL  A FPIG Y K ++R +A + +LPT+ RKDSQGICFLGK
Sbjct:   43 SEEVAVLLSGGVDSSVALELVRRQGFKPRAFYLRIWLEDELAHLGECPWEEDWSYASSVAEQL-KVPLESISLQEEYWEQVVEYLIREAKMGRTPNPDIMCNSRIKFGMFEEYVGKHFSRVASGHYA----------VSCHDDVGTRPSRLMMSPDKVKDQTYFLCNLRQDQLKHALFPIGGYTKEKVRELAREFNLPTQRRKDSQGICFLGK 244          
BLAST of NO07G00640 vs. NCBI_GenBank
Match: CBN78203.1 (tRNA-methyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 273.1 bits (697), Expect = 1.700e-69
Identity = 149/231 (64.50%), Postives = 177/231 (76.62%), Query Frame = 0
Query:  281 VLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYAR-----------AVPSVXXXXXXXXXXXXXXP------------MRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489
            +LLSGGVDSSVA+ LL  QGYK RAFYLKIWLEDELAHLN+CPWEED  YA+AVC+QAG VPLE +P+Q+EYW +VV++T++EA+EGRTPNPD++CNS +KFG+FY+ +GK F  VATGHYAR           A PS XXXXXXXXXXXXXX             +RL+ SPD +KDQTYFL  L Q+QL +A FP+G Y K +IR +AE  DLPTK RKDSQGICFLGK
Sbjct:    1 MLLSGGVDSSVAMRLLLDQGYKIRAFYLKIWLEDELAHLNECPWEEDLAYATAVCEQAG-VPLEVVPLQREYWDQVVSYTVREAREGRTPNPDVMCNSRIKFGMFYDHVGKHFRHVATGHYARLEHSGGSDDANATPSXXXXXXXXXXXXXXXXXVRVAAGSDRGRVRLLLSPDAVKDQTYFLCALTQDQLRKALFPLGVYTKDQIRELAESYDLPTKHRKDSQGICFLGK 230          
BLAST of NO07G00640 vs. NCBI_GenBank
Match: XP_005703327.1 (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Galdieria sulphuraria] >EME26807.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Galdieria sulphuraria])

HSP 1 Score: 272.7 bits (696), Expect = 2.300e-69
Identity = 169/419 (40.33%), Postives = 236/419 (56.32%), Query Frame = 0
Query:   76 LPSGLQELQQALRSLPPDDDKVKTLYLVSLGDRYAATGARPPSRPSTYPPAVGRRVPGCVSVVHMKVTLSENLSQVWVDGTSDARVSYGLVALVSQGLSGASPEEVLEIDPTAVATALGLKGGMMQKAPGRQNGLSNIIKTVQEEVKARMKEAAAPEGFSTIINASNTAPSXXXXXXXXXXXXXXXXXXXQIPLLTHSFAS----DEVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYAR--AVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489
            LP  L++L Q L   P  D   K   LV  G+    T      R S +      +V GC SVV++KVTL     +V++ G +D++V+ GL+ L+  GL   + ++V  +    +    GL+  +   +  R  G+  +++ +Q+      K    PEG          APS                        +H +++    DE+AVLLSGGVDSSVAL  L +QGY+ + FYL+IWLEDEL+HL +CPWEED  YA+AVC+  G + LE + +QKEYW +VV +TI EA+ GRTPNPD++CNS +KFGVF + +GK + K+A+GHYAR    PS                 +LM S D  KDQTYFL+ L Q QL +  FPIG   K ++RA+A +L+L T+SRKDSQGICFLG+
Sbjct:   81 LPKKLEDLCQDLYQSP--DKSSKLWKLVEWGNGLTET-LPVEERISKH------KVAGCASVVYIKVTLRN--EKVFLRGFADSKVAKGLLFLLLSGLQDTAVQQVKTLSAEVIIQKAGLETIL---SSSRMGGIKGMLRYIQQHCNLLQK----PEG----------APSCSD---------------------SHQYSTDSEKDEIAVLLSGGVDSSVALSRLLEQGYRVKPFYLRIWLEDELSHLGKCPWEEDLVYANAVCEHFG-LKLEQVTLQKEYWEQVVEYTISEARAGRTPNPDVMCNSRIKFGVFLDSIGKTYQKIASGHYARIQKEPSTGL-------------FQLMVSADAHKDQTYFLAHLLQRQLAKVVFPIGHLTKEQVRAIARELNLATQSRKDSQGICFLGQ 436          
BLAST of NO07G00640 vs. NCBI_GenBank
Match: KKS41088.1 (tRNA-specific 2-thiouridylase MnmA [Candidatus Kuenenbacteria bacterium GW2011_GWA2_42_15] >OGG91167.1 tRNA 2-thiouridine(34) synthase MnmA [Candidatus Kuenenbacteria bacterium RIFCSPLOWO2_02_FULL_42_16] >OGG92462.1 tRNA 2-thiouridine(34) synthase MnmA [Candidatus Kuenenbacteria bacterium RIFCSPLOWO2_12_FULL_42_13] >OGG95968.1 tRNA 2-thiouridine(34) synthase MnmA [Candidatus Kuenenbacteria bacterium RBG_16_41_7] >OGG98825.1 tRNA 2-thiouridine(34) synthase MnmA [Candidatus Kuenenbacteria bacterium RIFCSPHIGHO2_12_FULL_42_14])

HSP 1 Score: 269.6 bits (688), Expect = 1.900e-68
Identity = 129/211 (61.14%), Postives = 154/211 (72.99%), Query Frame = 0
Query:  278 EVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489
            ++AVL SGGVDSSV L LL+ QG+K  AFY+KIW+ED+ +HL QCPW+ED  Y   VC+Q   VPLE +P+QKEYW RVVA  I+E K GRTPNPDILCN  +KFGVFY+ +GK F+KVATGHYA+                      L RSPD+IKDQTYFL+RLNQ QL+R  FPIG Y+K E+R +AEK DLP K+RKDSQGICFLGK
Sbjct:    2 KIAVLASGGVDSSVVLRLLKDQGHKLTAFYIKIWMEDKFSHLGQCPWQEDLSYLEKVCQQL-KVPLEIVPLQKEYWQRVVAEAIREVKAGRTPNPDILCNQFIKFGVFYDYIGKGFDKVATGHYAQT-------------EEKNGIFYLKRSPDKIKDQTYFLARLNQTQLSRILFPIGGYKKEEVRRLAEKYDLPNKNRKDSQGICFLGK 198          
BLAST of NO07G00640 vs. NCBI_GenBank
Match: GAX12463.1 (tRNA-uridine 2-sulfurtransferase [Fistulifera solaris])

HSP 1 Score: 269.6 bits (688), Expect = 1.900e-68
Identity = 154/371 (41.51%), Postives = 221/371 (59.57%), Query Frame = 0
Query:  130 RVPGCVSVVHMKVTLSENLSQV-------WVDGTSDARVSYGLVALVSQGLSGASPEEVLEIDPTAVATALGLKGGMMQKAPGRQNGLSNIIKTVQEEVKARMKEAAAPEGFSTIINASNTAPSXXXXXXXXXXXXXXXXXXXQIPLLTHSFASDEVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHL-NQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVM----GKRFNKVATGHYARAVPSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489
            +VPGC + VH+++ L+ + S          ++GT+DA VS GLVA+++  +   S + + +I   ++ T LGL+      +PGR +G++++ +T+Q+ +     ++++P  F T     +T PS                        T S     VA+LLSGGVDSSVAL LL QQ Y+  AFYLKIWL+DE AHL   CPWEEDW     VC+QA NVPL+AI +Q+EY  RVV + +++A  GRTPNPDILCNS +KFG FY+V+     ++F+ +ATGHYAR                     RL R+PD +KDQ+YFL  L QEQL +  FP+G  EK ++R +A++ +LP + R DSQG+CFLG+
Sbjct:   88 KVPGCTANVHIQLILTSDASTTINSRTIQSLEGTADALVSQGLVAVIASCVEQESEDAIGQISAESITTRLGLQ---QHLSPGRNDGVASLWRTLQQSL-----QSSSPASFIT-----STEPS------------------------TQS-QQPSVALLLSGGVDSSVALRLLLQQNYRVTAFYLKIWLQDENAHLGGTCPWEEDWKICQQVCEQA-NVPLQAISLQQEYHERVVEYAMEQASLGRTPNPDILCNSRIKFGCFYDVLMSQQAEQFDYIATGHYARV-----------ERDDDDASARLFRAPDAVKDQSYFLCTLTQEQLQKTLFPLGHLEKAQVRQLADEFELPNRHRPDSQGLCFLGQ 408          
BLAST of NO07G00640 vs. NCBI_GenBank
Match: OGI19378.1 (tRNA 2-thiouridine(34) synthase MnmA [Candidatus Moranbacteria bacterium RIFCSPLOWO2_02_FULL_48_19])

HSP 1 Score: 265.0 bits (676), Expect = 4.700e-67
Identity = 130/215 (60.47%), Postives = 158/215 (73.49%), Query Frame = 0
Query:  278 EVAVLLSGGVDSSVALHLLQQQGYKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQKEYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYE-VMGKRFNKVATGHYARAV---PSVXXXXXXXXXXXXXXPMRLMRSPDRIKDQTYFLSRLNQEQLTRATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGK 489
            ++AVL+SGGVDSSVAL LL++QG++  AFYLKIWLEDELA L +CPWE+D  Y  AVC+QAG VPL+ +P QKEYW RVVA+TI E K GRTPNPD+LCN+ +KFG FY+ +  K F+K+ATGHYA+ V   P +               + L  SPD IKDQTYFLS+L Q+QL+RA FPIG Y K E+R +AEK  LP   RKDSQGICFLGK
Sbjct:    2 KIAVLVSGGVDSSVALRLLKEQGHELTAFYLKIWLEDELAFLGECPWEDDLQYVRAVCEQAG-VPLKIVPFQKEYWERVVAYTIDEVKAGRTPNPDMLCNARIKFGAFYDFIADKSFDKIATGHYAQVVEDHPELDSGSRSRIKSGTAKQVLLRMSPDTIKDQTYFLSQLTQKQLSRAIFPIGGYTKKEVRELAEKFQLPNAKRKDSQGICFLGK 215          
The following BLAST results are available for this feature:
BLAST of NO07G00640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27320.14.000e-15159.33trna (5-methylaminomethyl-2-thiouridylate)-methylt... [more]
CEM13165.11.500e-8142.00unnamed protein product [Vitrella brassicaformis C... [more]
EJK57851.11.900e-7643.36hypothetical protein THAOC_22066 [Thalassiosira oc... [more]
XP_005715790.11.500e-7338.77unnamed protein product [Chondrus crispus] >CDF359... [more]
XP_005825870.14.500e-7061.50hypothetical protein GUITHDRAFT_76798 [Guillardia ... [more]
CBN78203.11.700e-6964.50tRNA-methyltransferase [Ectocarpus siliculosus][more]
XP_005703327.12.300e-6940.33tRNA (5-methylaminomethyl-2-thiouridylate)-methylt... [more]
KKS41088.11.900e-6861.14tRNA-specific 2-thiouridylase MnmA [Candidatus Kue... [more]
GAX12463.11.900e-6841.51tRNA-uridine 2-sulfurtransferase [Fistulifera sola... [more]
OGI19378.14.700e-6760.47tRNA 2-thiouridine(34) synthase MnmA [Candidatus M... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00640.2NO07G00640.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G00640.1NO07G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552094gene_2381Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100192g6gene3236Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00640.2NO07G00640.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G00640.1NO07G00640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00640 ID=NO07G00640|Name=NO07G00640|organism=Nannochloropsis oceanica|type=gene|length=5210bp
CATTTTTATGCGCCGTCATCATCACGTCATAGGCCTGATCGTCACTCAAC
TGACACACAGTCGTCAGGGACCTCGCCACGTGGTGCCTGCTGTTCACTTC
ATCGTTGTAAAGGATCAACTCCCACCCTCCATCGAGCTGGGTTTCGCTTT
CGGTTTGCTCCACCACGAGGATGACGGGGGAGGGGCCGAGGTCTGTCTGA
GGCGTTATTTTTGGTTTGGCAGGTTGCACCACCGTGGACATGACAGGAGA
GGAGGTGGAAGAGAAGAAACAGCGGGTGGAGGAGGAAGTGAGGGAGGTAT
AGGAGGAGGAAGAAGGGAGGAAAGGGAGGAGAAAGGCGTGGAGGGTGGGG
AGGAGGAGGAGGGGGACTAGGAGCGGGAGGAGGGAGAGGGAGACGGGTCG
TCCGCGAGGTTGCATGTGAGGAGGCTGTTGAGGAGGTTGCTGTCAGTGGT
GCTGGTGCTGCTGCGGCTTCCTGTATGGAGGGTGAGTTTGGTCGAGAAAA
CGAGGCATAAGGGCATGTTTGATGTGTTCTTTATCCTCTGTTCGCTCTTG
ACGGGATGTGCACACCCCCAGATGAGCGCACTCATTGTCATACAGCAACA
GCAACAGCAGCAACAGCAACAGCAGAACTTTCACACTACAGTGCTCTGTC
CAAAACTCAACGAAAACAACACGGCAGGAGGAAGGCAAAGTTTGCAGCTG
CTGCTACTGCTGCTGCCTCTCTCGCTGTTCCTGCGATTCCTCCTGCCGCT
GCTACCACCACCGCTGATCCTCCTCCTTCTGCTCTCTCGCCTGTCGCTGT
GTAAGTGAAGAGACGTGTTGATGGTTGCGCGGGACAAAGTGAGAAATAGA
TAGCGAGAAGGGGAGAGGGGGAGAGAAAGGGGGAGAGAAGGAGGGAGAGA
AGGAGATCGAGGATGCGCAGGTTTCATCAGAGAAGGAATTCATAATATTT
TATTCTCACACACGTTGTATTCAGTGGATTGACAGATATAAATAGTTTTC
GCATCACATGAAGCGCATGCCCTCGTTTTCGTCTACTTTTTTCTTTCTTT
CTTTTCGCGCACGTACCTAAATGTGTATGTCTGGGTCCTGCTCCATGTTC
CCTGTAACATTGCATTTATGGGCAGAAGTACCTTGCTAATCCCTTCTTCA
ATTCACCAAACAGTGAAGTCCTGTGTCGAAAGAGGAGCCCAAAAATATGG
AATAATGAGTGAGTCATCCAGCCCTTTTCGATCGAAGAAACAAACGGACA
TCCGTTCGCCTCTTGTCACTTCGCATATGTTGGCTGGAATACTATCGTAT
TGTGGGTGTTGTCAGATAGAAAGGCTCTGTAATTGGAAACATTAAGAACT
TTTTCCTTTTCATAAGACCGTCGTGATTGGTAAAATACGAGCAATCATCA
TTCAACCCGCACTTTCTTGCTTGCTCTCTCTCACGCTCTTAGACAAAAGC
ACCTTATAATCAAATAGAAGAGGAACATCATACAACTCATGACGTACATG
TTCGTAGAAGAAATACGCCATTTTTATGCCTTTTTGATGCCTATGTGAGT
GTGAAGGAGGGGAAAGCAAGAAGTTGGCGGGCGACCAACAAAGCGGAGGG
AAAGAACAAAGGACGAGTATGATCGCATAGAGGAAGAGGTTTAGAAAATT
TTGTGTCTCAGAAAATAACATAGTGATTCCGGTTAGCGTTTCTTCTTCAG
AGGGCAAAGGTCGTAACCCAGGCCTCGGTAGAGGGAGCTTGTTTTCGATC
ATTGACGACGAGTTTTCTAGATGTATGTAGCGTTGGGAGGGTTCACAAAA
ACATGCACAAGTGGCTTTGCAGGACACTGGGTGGTGAAACAGGCAATACG
TAACAGAGTGTTTCCTTGTGCTTACCATTAATTGGCAAATGGACGTGCTT
GACTCTGGAGACGGTGGTGAGGTTGCGGCAGATGCTTGCGTGCAGGATGT
TGTTGGTAAGGTCCGGCCTCGTAAGCAGTAATCCGCCGCTAGCTGCGGCT
TGCTGAAAACAATTGGCTGCACTTGGAGTAAATCAGTGGCGACGTAGGGT
GCTGGGGCGCTTGGAGGGAGCAGGGCAGAGCGGGACACAATTTTAATCTT
TGGCCTCCTGTCTCACTTCTCATCCGCAGTGCCGCGTGCCACAGGGACTT
CGTGGTCGGACGAAATGTGCCCGGCACCACAGGCGACAATGAAGAGAGAT
GCCAAGAAAATGTTGCTGACCAACAGGCCGCACAACTACACGGAGGCGAA
GGCAGACATCGGACATCAGGAGCGGCGAGAGCTTCGCATCCATTGAGAAG
CCAAAAGCAAGCAGCAACTTGCGATGCTGACTGATGCTTCGTGAACCTTT
GTTTTTCATTGGCCAACGCGTCACGACCACATACAACGCATAGCTACAGG
AGAACAACCCCTGTCGAGCCGCCAGGACTAGTGGCTGTAGCTTGCCCTGA
AGGATGCTGGCCCTCTCCTAGATCCTTTGGCTGTATATTTCACCTCTCCT
TCGGAATGCTGCAACTTGAAGCGTTCCGGCGTGATGTGGCCGCAGTCCCG
CGTCTGCTACCCCTCGTTCTCCTATTGCTGTTGCTGCTGCCGTTGACGGA
TTCCTTTCTACAGCTGCCGTCGGCACCGCGGGGTTCACTTTCTCAGACAA
Ggtaggcatgtgcgtcgtttggttcgccacggcagcatcgtcatcccctg
gcccatcccacacaggaaatcgcaggcgtgcacacatacaccagtgggca
caggtgttcctgtcagcttaaatctttagctgctcaatatccttaccttc
ctctcgaacccactacgtagGCCACCACCCCCATTATTCTCCTCCAGACT
CGCCTCGGCCTCAGCCCATAACCCTCAAGATGGGACGCCTTCTACCACTC
TCCCTTCTGGCCTACAAGAGCTCCAACAAGCTTTAAGGTCTCTTCCCCCC
GATGATGATAAGGTCAAAACCCTCTACCTCGTCTCTCTTGGGGACCGCTA
TGCCGCCACTGGCGCCCGCCCTCCCTCCCGCCCTTCTACTTATCCCCCTG
CAGTAGGACGACGTGTCCCTGGCTGTGTGTCAGTCGTGCATATGAAAGTC
ACTCTTTCGGAAAATCTAAGCCAAGTGTGGGTAGATGGTACCTCAGACGC
CCGTGTGTCTTACGGGCTCGTGGCCTTGGTCTCTCAAGGGTTAAGCGGTG
CTTCGCCTGAAGAGGTATTAGAAATAGATCCGACAGCAGTAGCCACGGCG
TTGGGATTGAAAGGGGGGATGATGCAAAAAGCCCCGGGGAGGCAAAATGG
TCTATCGAATATCATCAAGACAGTACAGGAAGAGGTGAAAGCGAGGATGA
AGGAAGCTGCAGCTCCTGAGGGATTTTCTACCATCATTAATGCTTCCAAC
ACAGCCCCCTCCACCATCACCGACCCTTCTCCCATCGCCACCTCGACTCC
TCCCGCCCCCTCCCCCCTCCAGATACCCCTCCTCACCCACTCCTTTGCCT
CAGACGAAGTGGCCGTCCTCCTTTCCGGCGGTGTCGACTCATCAGTCGCC
CTCCACCTCCTCCAACAACAAGGATACAAGCCCCGCGCGTTCTACCTAAA
AATCTGGCTCGAAGACGAACTCGCCCACCTGAACCAATGTCCATGGGAGG
AGGATTGGGGCTATGCATCTGCCGTCTGTAAACAAGCAGGAAATGTTCCC
CTGGAGGCCATCCCCATGCAGAAGGAGTATTGGGCCCGGGTGGTCGCACA
CACCATCCAAGAAGCCAAAGAGGGAAGGACCCCTAACCCGGATATTCTCT
GCAACTCGCTCGTTAAATTTGGGGTCTTCTATGAAGTGATGGGGAAAAGA
TTCAATAAAGTAGCAACGGGCCATTATGCACGGGCAGTGCCCTCTGTGGG
AGGAGGAGGAGGAGGCGGAGGAGGAGGGAGGGAGGGAGGGCCGATGCGCT
TGATGCGGTCCCCGGACAGGATTAAAGATCAGACATATTTCTTGAGCCGA
CTGAACCAGGAGCAGTTGACGCGGGCGACTTTCCCAATCGGCGAGTACGA
GAAACACGAGATTCGCGCCATGGCGGAAAAGTTGGACCTGCCGACCAAGA
GCCGGAAAGACTCGCAGGGAATTTGCTTTTTGGgtaagaaggcgagggag
agggaggcggagggtggtgaataagagggcttgcagggcgaagtttgtca
acgcgcttttgcctgtgtattcacttacagtgcttattatatcttgaccg
ttttcctccctcttttcgtcactcttccctccctccctcagGCAAACTCC
GCTTCGACGACTTCCTGCGACACTACCTCGGTGAATCTCCCGGGGAGGTG
GTTTGGTTGGAGGAAAATGTTGTGATAGGACGGCATAACGGGCTGTGGTT
CCACACGATTGGTCAGAGAAAAGGGATTGTCCCTGTGTTGGCGAACGCCT
ATCGCCCCCTCGGTCCTTGGTATGTGGCCGCAAAGGACCCGAGTCGCAAT
GTTTTGTTTGTGACGAATAGCCCCGAGTCGCTGTCGTTAATGGGCGAGGC
GCAGGAGGGAAGGCTTGAAGGAAAGGAAGGGGAATGGAGTGACAAGGCTC
GTCGGACGTTTCGAGTGGATTGCGTGACTTGGATAAGTGGGTCGCCGCCG
CCGGCGCTGGGGCTCGGCCAGAGCATGGAGCTCGAAGTCCAGATCCGGCA
TGGGCCGAATTCCCATCCTCGGTCGCTTATTCGCGCCCTGACGGGCATGG
GCGAAGAGGCGGTGAGTTGCTTGGAGGTAACATTGCCAAGTGAAGATAGT
TTGGCACCTGGTCAGTACGCGGCATTCTATCGAGATGCGGAGGAGGGCGG
AACTGAATGCTTGGGTGCCGGAGTGATTTCGGAGGAAACGTGGCGCGTGC
CACAGGCGCCATACAGGTTGACTGTCCACAAAAAGTAACGTTATATTATG
TATAAGGGAAAAAGAGGTGTCAATATTGTGTAAATAAGTGTGCAAGCTTT
ATGTTGCTCGGCTTTAATTGATCTAAATGTTTACCGCATTCGTATGTGCA
TTTGAAGTTATTGGACTTTCTCTCTCTCTGTGGCCCTAAAGCCGGGGACT
GAAAGGGTACCATAGTTCCCCACTACCGCGTGCGATTTATGAATCTTGCG
AATACGAGGGCTTCCCTTATTGGAAAACGACGTCACAGCAAGCAGACTGA
AAAACGAGAG
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protein sequence of NO07G00640.2

>NO07G00640.2-protein ID=NO07G00640.2-protein|Name=NO07G00640.2|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MLQLEAFRRDVAAVPRLLPLVLLLLLLLPLTDSFLQLPSAPRGSLSQTRP
PPPLFSSRLASASAHNPQDGTPSTTLPSGLQELQQALRSLPPDDDKVKTL
YLVSLGDRYAATGARPPSRPSTYPPAVGRRVPGCVSVVHMKVTLSENLSQ
VWVDGTSDARVSYGLVALVSQGLSGASPEEVLEIDPTAVATALGLKGGMM
QKAPGRQNGLSNIIKTVQEEVKARMKEAAAPEGFSTIINASNTAPSTITD
PSPIATSTPPAPSPLQIPLLTHSFASDEVAVLLSGGVDSSVALHLLQQQG
YKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQK
EYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGH
YARAVPSVGGGGGGGGGGREGGPMRLMRSPDRIKDQTYFLSRLNQEQLTR
ATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGKKAREREAEGGE*
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protein sequence of NO07G00640.1

>NO07G00640.1-protein ID=NO07G00640.1-protein|Name=NO07G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=702bp
MLQLEAFRRDVAAVPRLLPLVLLLLLLLPLTDSFLQLPSAPRGSLSQTRP
PPPLFSSRLASASAHNPQDGTPSTTLPSGLQELQQALRSLPPDDDKVKTL
YLVSLGDRYAATGARPPSRPSTYPPAVGRRVPGCVSVVHMKVTLSENLSQ
VWVDGTSDARVSYGLVALVSQGLSGASPEEVLEIDPTAVATALGLKGGMM
QKAPGRQNGLSNIIKTVQEEVKARMKEAAAPEGFSTIINASNTAPSTITD
PSPIATSTPPAPSPLQIPLLTHSFASDEVAVLLSGGVDSSVALHLLQQQG
YKPRAFYLKIWLEDELAHLNQCPWEEDWGYASAVCKQAGNVPLEAIPMQK
EYWARVVAHTIQEAKEGRTPNPDILCNSLVKFGVFYEVMGKRFNKVATGH
YARAVPSVGGGGGGGGGGREGGPMRLMRSPDRIKDQTYFLSRLNQEQLTR
ATFPIGEYEKHEIRAMAEKLDLPTKSRKDSQGICFLGKLRFDDFLRHYLG
ESPGEVVWLEENVVIGRHNGLWFHTIGQRKGIVPVLANAYRPLGPWYVAA
KDPSRNVLFVTNSPESLSLMGEAQEGRLEGKEGEWSDKARRTFRVDCVTW
ISGSPPPALGLGQSMELEVQIRHGPNSHPRSLIRALTGMGEEAVSCLEVT
LPSEDSLAPGQYAAFYRDAEEGGTECLGAGVISEETWRVPQAPYRLTVHK
K*
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Synonyms
Publications