NO07G00490, NO07G00490 (gene) Nannochloropsis oceanica

Overview
NameNO07G00490
Unique NameNO07G00490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1877
Alignment locationchr7:177283..179159 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:177283..179159 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004725protein tyrosine phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
Vocabulary: INTERPRO
TermDefinition
IPR029021Prot-tyrosine_phosphatase-like
IPR000242Tyr_Pase_rcpt/non-rcpt
Homology
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BLAST of NO07G00490 vs. NCBI_GenBank
Match: EWM27302.1 (hypothetical protein Naga_101737g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 184.5 bits (467), Expect = 4.200e-43
Identity = 81/119 (68.07%), Postives = 91/119 (76.47%), Query Frame = 0 
Query:   21 YKESNEKPGTYIQNCPVPRGDLFPLSQDPRTWPSCDDAYEVSWRLDPGKHLQGLSANLLTKLSRSMGFCPHRRCQLSSLPNSPSPGVCPPGLCYTKLEDGAPTYGACCFEEDGTFSSGG 140
            Y+ S+EKPGTY++ CP PRG LFPLS DP  WP CDDAY V+W LD G HL+GLSA    KLSRSMG+CPHRRCQLS + NS  P  CP GLCYTKLE G+PTYGACCF+EDG   S G
Sbjct:   70 YQMSSEKPGTYVRRCPTPRGLLFPLSVDPSEWPGCDDAYHVTWSLDVGDHLRGLSATNFAKLSRSMGYCPHRRCQLSDVGNSARPSQCPEGLCYTKLEKGSPTYGACCFQEDGQRGSEG 188
The following BLAST results are available for this feature:
BLAST of NO07G00490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27302.14.200e-4368.07hypothetical protein Naga_101737g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000805NSK000805Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00490.1NO07G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|327000gene_2359Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101737g1gene3254Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00490.1NO07G00490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00490 ID=NO07G00490|Name=NO07G00490|organism=Nannochloropsis oceanica|type=gene|length=1877bp
ATGTGGCACACACCAAGTGGCAGCAAATATGAAACTAATGAGCAAGTTGC
AACGGCGAGTTATAAAGAATCCAACGAGAAGCCAGGGACCTATATTCAgt
acgtccaccctcgtcctgcccctctctctacatagccttcttttttaccc
tccttctgcttaccctaacccctactatgtcttctctagAAATTGCCCTG
TCCCCAGAGGCGACCTCTTCCCCCTGTCTCAAGATCCACGCACATGGCCT
TCATGCGACGATGCCTATGAGGTGTCGTGGCGCCTTGACCCGGGCAAGCA
TTTGCAAGGGCTCTCAGgtagggaggtagaaagggagggtgataaatata
cacagggaagatagaggagcgaaaggaaagcgaggcccgcatgtgcccat
ttggaatgcttacatgaacggtacatctctctctcttttcgctactccat
ctgctcctcctgctcctcctgctcctccccctcccccttctcctcctgct
cctcctcctcctctccctcctcttgcgccatagCAAACCTCCTGACCAAG
TTATCACGGTCCATGGGCTTTTGCCCGCATCGTCGTTGTCAGCTCTCCTC
CCTCCCCAACAGTCCCTCGCCTGGCGTATGCCCCCCTGGCCTGTGCTATA
CAAAGTTGGAGGATGGAGCCCCTACGTATGGCGCGTGTTGTTTCGAGGAG
GATGgtgagggagagacggagaaagggagggagggagggagggagggagg
gcgggaggggggacgaacattacattcaggatacctccacaccactgttg
gcgagaactcaccctccctccctccctcccaccctccaatcccagGCACC
TTCTCCTCCGGGGGGCTACTGGGTTATGCCGACCTCTTGCGACAGACAGC
CAAGCCGATGTACAAACGAAATCGGGTGGTGCTAGGAGGGGATCCGCAGG
ATGAGTCCAAGgtaaggagggagagagggggggaaggggggaaggaggga
gggagagagggagggctgaaccgttttttttaaaaaaataaataaattaa
taaacaacgatctgggtggtgccaggagaggaaggaagggagggagggag
gttggggaggaataacggtattggtgagcataaatgttccatctcatcaa
cccctttatccttcctcctccttctccttttcctcctcctcctccttctc
ctccttctcctccttctcctccttctcctcctcctcctcctcctcatcct
cctcctgacagGCGACATTCATAAACGCCAATGAGGTCCTCCCGGGTCTC
ATCCTCACTCAATGCCCCTTCACCTgtacgtgccccctccctccctccct
ccctccctccctccctccctccctcttaccctcactcctcctactctccc
tccctctcatcctcccccccctccttccccctcccctccctccctccttc
cagccccccttcgccgggtcatccagCCTCCACCCTCCCTGCGTTCGAGC
AGCTGCTGCGGGAGCAAGGCGTGACTATGGTCGTCCAAATTGACCCATAT
GTCGACGATAGGAACGAAGgtatctccctccctccttccttccctccctc
ctttcctttatgatcattcggacccccccccctcgcctctccttcgtttt
cccttctttcttttgttttctttcttttacctcattctatactcttactt
actccctccctccaaatcctccctccctccctccctccctccctccctcc
ctccccacaagACGACACCTCCCTCCTTGAGCACACTTCCAAACGTGGCT
GCGCCGTCTGGCCCGCCACTGCAGCCCTCCCTCCCTCCCTCTCTCCCTCC
TTCCCCCCCCTCGACCCATGCAAATAG
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protein sequence of NO07G00490.1

>NO07G00490.1-protein ID=NO07G00490.1-protein|Name=NO07G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MWHTPSGSKYETNEQVATASYKESNEKPGTYIQNCPVPRGDLFPLSQDPR
TWPSCDDAYEVSWRLDPGKHLQGLSANLLTKLSRSMGFCPHRRCQLSSLP
NSPSPGVCPPGLCYTKLEDGAPTYGACCFEEDGTFSSGGLLGYADLLRQT
AKPMYKRNRVVLGGDPQDESKATFINANEVLPGLILTQCPFTSSTLPAFE
QLLREQGVTMVVQIDPYVDDRNEDDTSLLEHTSKRGCAVWPATAALPPSL
SPSFPPLDPCK*
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Synonyms
Publications