NO07G00490.1, NO07G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00490.1
Unique NameNO07G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length786
Alignment locationchr7:177283..179159 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:177283..179159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00490.1 vs.
Match: EWM27302.1 (hypothetical protein Naga_101737g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 184.5 bits (467), Expect = 4.200e-43
Identity = 81/119 (68.07%), Postives = 91/119 (76.47%), Query Frame = 0 
Query:   21 YKESNEKPGTYIQNCPVPRGDLFPLSQDPRTWPSCDDAYEVSWRLDPGKHLQGLSANLLTKLSRSMGFCPHRRCQLSSLPNSPSPGVCPPGLCYTKLEDGAPTYGACCFEEDGTFSSGG 140
            Y+ S+EKPGTY++ CP PRG LFPLS DP  WP CDDAY V+W LD G HL+GLSA    KLSRSMG+CPHRRCQLS + NS  P  CP GLCYTKLE G+PTYGACCF+EDG   S G
Sbjct:   70 YQMSSEKPGTYVRRCPTPRGLLFPLSVDPSEWPGCDDAYHVTWSLDVGDHLRGLSATNFAKLSRSMGYCPHRRCQLSDVGNSARPSQCPEGLCYTKLEKGSPTYGACCFQEDGQRGSEG 188
The following BLAST results are available for this feature:
BLAST of NO07G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27302.14.200e-4368.07hypothetical protein Naga_101737g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00490NO07G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00490.1NO07G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00490.1.cds1NO07G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00490.1.cds2NO07G00490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00490.1.cds3NO07G00490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00490.1.cds4NO07G00490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00490.1.cds5NO07G00490.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00490.1.cds6NO07G00490.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G00490.1.cds7NO07G00490.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00490.1 ID=NO07G00490.1|Name=NO07G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=786bp
ATGTGGCACACACCAAGTGGCAGCAAATATGAAACTAATGAGCAAGTTGC
AACGGCGAGTTATAAAGAATCCAACGAGAAGCCAGGGACCTATATTCAAA
ATTGCCCTGTCCCCAGAGGCGACCTCTTCCCCCTGTCTCAAGATCCACGC
ACATGGCCTTCATGCGACGATGCCTATGAGGTGTCGTGGCGCCTTGACCC
GGGCAAGCATTTGCAAGGGCTCTCAGCAAACCTCCTGACCAAGTTATCAC
GGTCCATGGGCTTTTGCCCGCATCGTCGTTGTCAGCTCTCCTCCCTCCCC
AACAGTCCCTCGCCTGGCGTATGCCCCCCTGGCCTGTGCTATACAAAGTT
GGAGGATGGAGCCCCTACGTATGGCGCGTGTTGTTTCGAGGAGGATGGCA
CCTTCTCCTCCGGGGGGCTACTGGGTTATGCCGACCTCTTGCGACAGACA
GCCAAGCCGATGTACAAACGAAATCGGGTGGTGCTAGGAGGGGATCCGCA
GGATGAGTCCAAGGCGACATTCATAAACGCCAATGAGGTCCTCCCGGGTC
TCATCCTCACTCAATGCCCCTTCACCTCCTCCACCCTCCCTGCGTTCGAG
CAGCTGCTGCGGGAGCAAGGCGTGACTATGGTCGTCCAAATTGACCCATA
TGTCGACGATAGGAACGAAGACGACACCTCCCTCCTTGAGCACACTTCCA
AACGTGGCTGCGCCGTCTGGCCCGCCACTGCAGCCCTCCCTCCCTCCCTC
TCTCCCTCCTTCCCCCCCCTCGACCCATGCAAATAG
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protein sequence of NO07G00490.1

>NO07G00490.1-protein ID=NO07G00490.1-protein|Name=NO07G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MWHTPSGSKYETNEQVATASYKESNEKPGTYIQNCPVPRGDLFPLSQDPR
TWPSCDDAYEVSWRLDPGKHLQGLSANLLTKLSRSMGFCPHRRCQLSSLP
NSPSPGVCPPGLCYTKLEDGAPTYGACCFEEDGTFSSGGLLGYADLLRQT
AKPMYKRNRVVLGGDPQDESKATFINANEVLPGLILTQCPFTSSTLPAFE
QLLREQGVTMVVQIDPYVDDRNEDDTSLLEHTSKRGCAVWPATAALPPSL
SPSFPPLDPCK*
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mRNA from alignment at chr7:177283..179159+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00490.1 ID=NO07G00490.1|Name=NO07G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1877bp|location=Sequence derived from alignment at chr7:177283..179159+ (Nannochloropsis oceanica)
ATGTGGCACACACCAAGTGGCAGCAAATATGAAACTAATGAGCAAGTTGC
AACGGCGAGTTATAAAGAATCCAACGAGAAGCCAGGGACCTATATTCAGT
ACGTCCACCCTCGTCCTGCCCCTCTCTCTACATAGCCTTCTTTTTTACCC
TCCTTCTGCTTACCCTAACCCCTACTATGTCTTCTCTAGAAATTGCCCTG
TCCCCAGAGGCGACCTCTTCCCCCTGTCTCAAGATCCACGCACATGGCCT
TCATGCGACGATGCCTATGAGGTGTCGTGGCGCCTTGACCCGGGCAAGCA
TTTGCAAGGGCTCTCAGGTAGGGAGGTAGAAAGGGAGGGTGATAAATATA
CACAGGGAAGATAGAGGAGCGAAAGGAAAGCGAGGCCCGCATGTGCCCAT
TTGGAATGCTTACATGAACGGTACATCTCTCTCTCTTTTCGCTACTCCAT
CTGCTCCTCCTGCTCCTCCTGCTCCTCCCCCTCCCCCTTCTCCTCCTGCT
CCTCCTCCTCCTCTCCCTCCTCTTGCGCCATAGCAAACCTCCTGACCAAG
TTATCACGGTCCATGGGCTTTTGCCCGCATCGTCGTTGTCAGCTCTCCTC
CCTCCCCAACAGTCCCTCGCCTGGCGTATGCCCCCCTGGCCTGTGCTATA
CAAAGTTGGAGGATGGAGCCCCTACGTATGGCGCGTGTTGTTTCGAGGAG
GATGGTGAGGGAGAGACGGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGG
GCGGGAGGGGGGACGAACATTACATTCAGGATACCTCCACACCACTGTTG
GCGAGAACTCACCCTCCCTCCCTCCCTCCCACCCTCCAATCCCAGGCACC
TTCTCCTCCGGGGGGCTACTGGGTTATGCCGACCTCTTGCGACAGACAGC
CAAGCCGATGTACAAACGAAATCGGGTGGTGCTAGGAGGGGATCCGCAGG
ATGAGTCCAAGGTAAGGAGGGAGAGAGGGGGGGAAGGGGGGAAGGAGGGA
GGGAGAGAGGGAGGGCTGAACCGTTTTTTTTAAAAAAATAAATAAATTAA
TAAACAACGATCTGGGTGGTGCCAGGAGAGGAAGGAAGGGAGGGAGGGAG
GTTGGGGAGGAATAACGGTATTGGTGAGCATAAATGTTCCATCTCATCAA
CCCCTTTATCCTTCCTCCTCCTTCTCCTTTTCCTCCTCCTCCTCCTTCTC
CTCCTTCTCCTCCTTCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCATCCT
CCTCCTGACAGGCGACATTCATAAACGCCAATGAGGTCCTCCCGGGTCTC
ATCCTCACTCAATGCCCCTTCACCTGTACGTGCCCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCTTACCCTCACTCCTCCTACTCTCCC
TCCCTCTCATCCTCCCCCCCCTCCTTCCCCCTCCCCTCCCTCCCTCCTTC
CAGCCCCCCTTCGCCGGGTCATCCAGCCTCCACCCTCCCTGCGTTCGAGC
AGCTGCTGCGGGAGCAAGGCGTGACTATGGTCGTCCAAATTGACCCATAT
GTCGACGATAGGAACGAAGGTATCTCCCTCCCTCCTTCCTTCCCTCCCTC
CTTTCCTTTATGATCATTCGGACCCCCCCCCCTCGCCTCTCCTTCGTTTT
CCCTTCTTTCTTTTGTTTTCTTTCTTTTACCTCATTCTATACTCTTACTT
ACTCCCTCCCTCCAAATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCCACAAGACGACACCTCCCTCCTTGAGCACACTTCCAAACGTGGCT
GCGCCGTCTGGCCCGCCACTGCAGCCCTCCCTCCCTCCCTCTCTCCCTCC
TTCCCCCCCCTCGACCCATGCAAATAG
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Coding sequence (CDS) from alignment at chr7:177283..179159+

>NO07G00490.1 ID=NO07G00490.1|Name=NO07G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr7:177283..179159+ (Nannochloropsis oceanica)
ATGTGGCACACACCAAGTGGCAGCAAATATGAAACTAATGAGCAAGTTGC
AACGGCGAGTTATAAAGAATCCAACGAGAAGCCAGGGACCTATATTCAAA
ATTGCCCTGTCCCCAGAGGCGACCTCTTCCCCCTGTCTCAAGATCCACGC
ACATGGCCTTCATGCGACGATGCCTATGAGGTGTCGTGGCGCCTTGACCC
GGGCAAGCATTTGCAAGGGCTCTCAGCAAACCTCCTGACCAAGTTATCAC
GGTCCATGGGCTTTTGCCCGCATCGTCGTTGTCAGCTCTCCTCCCTCCCC
AACAGTCCCTCGCCTGGCGTATGCCCCCCTGGCCTGTGCTATACAAAGTT
GGAGGATGGAGCCCCTACGTATGGCGCGTGTTGTTTCGAGGAGGATGGCA
CCTTCTCCTCCGGGGGGCTACTGGGTTATGCCGACCTCTTGCGACAGACA
GCCAAGCCGATGTACAAACGAAATCGGGTGGTGCTAGGAGGGGATCCGCA
GGATGAGTCCAAGGCGACATTCATAAACGCCAATGAGGTCCTCCCGGGTC
TCATCCTCACTCAATGCCCCTTCACCTCCTCCACCCTCCCTGCGTTCGAG
CAGCTGCTGCGGGAGCAAGGCGTGACTATGGTCGTCCAAATTGACCCATA
TGTCGACGATAGGAACGAAGACGACACCTCCCTCCTTGAGCACACTTCCA
AACGTGGCTGCGCCGTCTGGCCCGCCACTGCAGCCCTCCCTCCCTCCCTC
TCTCCCTCCTTCCCCCCCCTCGACCCATGCAAATAG
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Synonyms
Publications