NO07G00440, NO07G00440 (gene) Nannochloropsis oceanica

Overview
NameNO07G00440
Unique NameNO07G00440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length252
Alignment locationchr7:164808..165059 +

Link to JBrowse

Properties
Property NameValue
DescriptionIntegral membrane gpr155-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:164808..165059 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO07G00440 vs. NCBI_GenBank
Match: XP_005852717.1 (integral membrane gpr155-like protein [Nannochloropsis gaditana CCMP526] >EKU23113.1 integral membrane gpr155-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 71.6 bits (174), Expect = 1.300e-9
Identity = 40/64 (62.50%), Postives = 45/64 (70.31%), Query Frame = 0 
Query:    1 MLITLSRSVLDLLPSSXXXXXXXXXXXPFLFLDLAMFALISPVLWCLYGLDKELVVFQVLRKGG 65
            M IT  RS+LDLLPS             FLFLDLA+FALI+PV+WCLYGLD ELV+FQ LR GG
Sbjct:  620 MSITSIRSILDLLPS------FYSSSASFLFLDLAVFALIAPVVWCLYGLDSELVIFQALRWGG 677
The following BLAST results are available for this feature:
BLAST of NO07G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852717.11.300e-962.50integral membrane gpr155-like protein [Nannochloro... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00440.1NO07G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00440.1NO07G00440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00440 ID=NO07G00440|Name=NO07G00440|organism=Nannochloropsis oceanica|type=gene|length=252bp
ATGCTCATCACCCTCTCCCGCAGCGTCCTCGACCTCCTCCCTTCCTCCTC
CTCCTCCTCCCCCTCCTCCTCCTCCTATTCGCCTTTCTTATTTTTGGATC
TGGCCATGTTTGCATTGATCTCTCCCGTGCTATGGTGTTTATACGGGCTC
GACAAGGAGTTAGTGGTCTTTCAGGTGCTGAGGAAGGGGGGGATGGCAGT
GGGGAGGGTGTGTGGGATGGGGAGGGAGGGAGGGAGGGCGCATGTCGAGT
AG
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protein sequence of NO07G00440.1

>NO07G00440.1-protein ID=NO07G00440.1-protein|Name=NO07G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MLITLSRSVLDLLPSSSSSSPSSSSYSPFLFLDLAMFALISPVLWCLYGL
DKELVVFQVLRKGGMAVGRVCGMGREGGRAHVE*
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Synonyms
Publications