NO07G00440.1, NO07G00440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G00440.1
Unique NameNO07G00440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length252
Alignment locationchr7:164808..165059 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:164808..165059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G00440.1 vs.
Match: XP_005852717.1 (integral membrane gpr155-like protein [Nannochloropsis gaditana CCMP526]; EKU23113.1 integral membrane gpr155-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 76.3 bits (186), Expect = 5.200e-11
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 0 
Query:    1 MLITLSRSVLDLLPSSSSSSPSSSSYSPFLFLDLAMFALISPVLWCLYGLDKELVVFQVLRKGG 65
            M IT  RS+LDLLPS  SSS S      FLFLDLA+FALI+PV+WCLYGLD ELV+FQ LR GG
Sbjct:  620 MSITSIRSILDLLPSFYSSSAS------FLFLDLAVFALIAPVVWCLYGLDSELVIFQALRWGG 677
The following BLAST results are available for this feature:
BLAST of NO07G00440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852717.15.200e-1168.75integral membrane gpr155-like protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G00440NO07G00440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G00440.1NO07G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G00440.1.cds1NO07G00440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G00440.1 ID=NO07G00440.1|Name=NO07G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=252bp
ATGCTCATCACCCTCTCCCGCAGCGTCCTCGACCTCCTCCCTTCCTCCTC
CTCCTCCTCCCCCTCCTCCTCCTCCTATTCGCCTTTCTTATTTTTGGATC
TGGCCATGTTTGCATTGATCTCTCCCGTGCTATGGTGTTTATACGGGCTC
GACAAGGAGTTAGTGGTCTTTCAGGTGCTGAGGAAGGGGGGGATGGCAGT
GGGGAGGGTGTGTGGGATGGGGAGGGAGGGAGGGAGGGCGCATGTCGAGT
AG
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protein sequence of NO07G00440.1

>NO07G00440.1-protein ID=NO07G00440.1-protein|Name=NO07G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MLITLSRSVLDLLPSSSSSSPSSSSYSPFLFLDLAMFALISPVLWCLYGL
DKELVVFQVLRKGGMAVGRVCGMGREGGRAHVE*
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mRNA from alignment at chr7:164808..165059+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G00440.1 ID=NO07G00440.1|Name=NO07G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=252bp|location=Sequence derived from alignment at chr7:164808..165059+ (Nannochloropsis oceanica)
ATGCTCATCACCCTCTCCCGCAGCGTCCTCGACCTCCTCCCTTCCTCCTC
CTCCTCCTCCCCCTCCTCCTCCTCCTATTCGCCTTTCTTATTTTTGGATC
TGGCCATGTTTGCATTGATCTCTCCCGTGCTATGGTGTTTATACGGGCTC
GACAAGGAGTTAGTGGTCTTTCAGGTGCTGAGGAAGGGGGGGATGGCAGT
GGGGAGGGTGTGTGGGATGGGGAGGGAGGGAGGGAGGGCGCATGTCGAGT
AG
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Coding sequence (CDS) from alignment at chr7:164808..165059+

>NO07G00440.1 ID=NO07G00440.1|Name=NO07G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at chr7:164808..165059+ (Nannochloropsis oceanica)
ATGCTCATCACCCTCTCCCGCAGCGTCCTCGACCTCCTCCCTTCCTCCTC
CTCCTCCTCCCCCTCCTCCTCCTCCTATTCGCCTTTCTTATTTTTGGATC
TGGCCATGTTTGCATTGATCTCTCCCGTGCTATGGTGTTTATACGGGCTC
GACAAGGAGTTAGTGGTCTTTCAGGTGCTGAGGAAGGGGGGGATGGCAGT
GGGGAGGGTGTGTGGGATGGGGAGGGAGGGAGGGAGGGCGCATGTCGAGT
AG
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Synonyms
Publications