NO06G04280, NO06G04280 (gene) Nannochloropsis oceanica

Overview
NameNO06G04280
Unique NameNO06G04280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1864
Alignment locationchr6:1200303..1202166 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1200303..1202166 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G04280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04280.1NO06G04280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|251483gene_9602Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04280.1NO06G04280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04280 ID=NO06G04280|Name=NO06G04280|organism=Nannochloropsis oceanica|type=gene|length=1864bp
TGGGGGGGGCAAGAGATCAGGAGCGGGGACAACACGAGCGGTCTTACCCC
ACCCGGCTCCCCCCCTCTCGGTCTCTTCCTCCTCCTCGACCTCCTACTCC
CGCCCTTTCCCACTGCCTCCACCACTATCCGCGGGCCCGCACACTGCTGG
GCTGGGAAGAGGGAGAGGAGAGGGATGGAGAGGGGGCGAAGGCGCGCCAA
GAGGACACCCTCCCTATATGTCCTCCTCCCCTCCCTCCTCATCGTCCTCC
TTAGCCTCAGCCACATCCGCTTCACCTTCGTTCCTATCCACGGCAGGAGA
AGGAGGAAGGGGGGGGGGGGGAGGCGAAAAGGTGGAGGGCCTGTGTCATT
GTACGATATTCTAGTGGCGTCCGAAGCGGCTAGAAGgtgagaggggatgg
agagggggagggaggaaggaaggaaggaaggaaggaaggaaggaagggat
ttttgtcgtggggaaatatggagggaagattcatttcagcctagacaatt
catcctctatccctccctccttcccttcctccctcccatccgactcgccg
acccgctcatgatagCGGGCAGAACCACCACCATCAGCAGCAGCACCAGC
AGCACCAGCACCAGCGCCAGCAGCGCCACAGGCCAGGCAGCTCTGCTTGT
GGGAAAGGCGGTGGAGGAGGACGGGGGGAAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAG
GAGGGACACTGACGACAGGAGGGAGGGACGGAGTGGGGGGTACGATGACT
CCTTTATCCCATTACATGAGCATTATAGGTCTGGGCCCTCCCAAGAGAAA
GAAGCTGACGACGCTCAAGAAGAAGATATTGATGgtgaggctgtcccctc
cgtccctccctcccccctccctccctcgcccttcttcatccatttccctc
atcatttccctccgagtttttggacggccagatcacgcactctccatact
ttccctccctccctccctccctccctcactcactcactccctccttcctt
ccttccattattacctcagAATCGGCTACAAGACTTTACTCAGCAAATGA
TGCAACGACAGCAGCAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACACCAACAACAACACCAACAACAACAACAGCAACAGCAGCA
GCAACAGCAGCAGCAGCAGCAAGGGCACCATTCATCCTCCCTCTCCTCAT
TTTCTGGCGGAGGAGGGAGAGAGGGAGAGAGGGAGAGAGGGAGGGAGGGA
GGGACGACCGTGATTGTCTTTCACGATGCCGTCTCTGAGGAACAATTAGA
GGACAAGGAAGAGCTTGCAGAGCTACAGgtgcacataaagaaggagggag
ggagggagggatggagggaggaaagaagtgggggaagaaggtttaagagg
gagggatacgggaagtgtgggtgcatgtacttcggtgtcgttgcgctcaa
ccctacccccctcccttccttcctcccttcctccctccctccgtcagGCC
AATATCGCCCATGTCTGTCGCCCATTCGGTCGTCTCCAGTCTCTCTATAT
CCCCCCCACGAGGCCCATGATGCCGGGCTCATTTTCGTCGCCTATTCCAC
CCCCAACGAAGCGCTCGCGGgtacgttttaacggcttgctttccctctct
ctccccttttatctatcaatctatctctcttttttccctctctctctctc
ttgctgctgacatccttccttccctccctccctccctccctccctccctc
cctccctccttagCCGTCGCCGGTCTCGCCGGACGGATGTTGGGAGGGGA
TCCGCTGCAGGTGA
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protein sequence of NO06G04280.1

>NO06G04280.1-protein ID=NO06G04280.1-protein|Name=NO06G04280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MERGRRRAKRTPSLYVLLPSLLIVLLSLSHIRFTFVPIHGRRRRKGGGGR
RKGGGPVSLYDILVASEAARSGQNHHHQQQHQQHQHQRQQRHRPGSSACG
KGGGGGRGEGGGGGGGGGGGGRGGGGGGGRGGGGTLTTGGRDGVGGTMTP
LSHYMSIIGLGPPKRKKLTTLKKKILMNRLQDFTQQMMQRQQQQQQQQQQ
QQQQQQQHQQQHQQQQQQQQQQQQQQQQGHHSSSLSSFSGGGGREGERER
GREGGTTVIVFHDAVSEEQLEDKEELAELQANIAHVCRPFGRLQSLYIPP
TRPMMPGSFSSPIPPPTKRSRPSPVSPDGCWEGIRCR*
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Synonyms
Publications