NO06G04280.1, NO06G04280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04280.1
Unique NameNO06G04280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1188
Alignment locationchr6:1200303..1202166 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1200303..1202166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO06G04280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04280NO06G04280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04280.1NO06G04280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04280.1.cds1NO06G04280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04280.1.cds2NO06G04280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04280.1.cds3NO06G04280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04280.1.cds4NO06G04280.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04280.1.cds5NO06G04280.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04280.1 ID=NO06G04280.1|Name=NO06G04280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1188bp
TGGGGGGGGCAAGAGATCAGGAGCGGGGACAACACGAGCGGTCTTACCCC
ACCCGGCTCCCCCCCTCTCGGTCTCTTCCTCCTCCTCGACCTCCTACTCC
CGCCCTTTCCCACTGCCTCCACCACTATCCGCGGGCCCGCACACTGCTGG
GCTGGGAAGAGGGAGAGGAGAGGGATGGAGAGGGGGCGAAGGCGCGCCAA
GAGGACACCCTCCCTATATGTCCTCCTCCCCTCCCTCCTCATCGTCCTCC
TTAGCCTCAGCCACATCCGCTTCACCTTCGTTCCTATCCACGGCAGGAGA
AGGAGGAAGGGGGGGGGGGGGAGGCGAAAAGGTGGAGGGCCTGTGTCATT
GTACGATATTCTAGTGGCGTCCGAAGCGGCTAGAAGCGGGCAGAACCACC
ACCATCAGCAGCAGCACCAGCAGCACCAGCACCAGCGCCAGCAGCGCCAC
AGGCCAGGCAGCTCTGCTTGTGGGAAAGGCGGTGGAGGAGGACGGGGGGA
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAG
GAGGAGGAGGAAGAGGAGGAGGAGGGACACTGACGACAGGAGGGAGGGAC
GGAGTGGGGGGTACGATGACTCCTTTATCCCATTACATGAGCATTATAGG
TCTGGGCCCTCCCAAGAGAAAGAAGCTGACGACGCTCAAGAAGAAGATAT
TGATGAATCGGCTACAAGACTTTACTCAGCAAATGATGCAACGACAGCAG
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACACCA
ACAACAACACCAACAACAACAACAGCAACAGCAGCAGCAACAGCAGCAGC
AGCAGCAAGGGCACCATTCATCCTCCCTCTCCTCATTTTCTGGCGGAGGA
GGGAGAGAGGGAGAGAGGGAGAGAGGGAGGGAGGGAGGGACGACCGTGAT
TGTCTTTCACGATGCCGTCTCTGAGGAACAATTAGAGGACAAGGAAGAGC
TTGCAGAGCTACAGGCCAATATCGCCCATGTCTGTCGCCCATTCGGTCGT
CTCCAGTCTCTCTATATCCCCCCCACGAGGCCCATGATGCCGGGCTCATT
TTCGTCGCCTATTCCACCCCCAACGAAGCGCTCGCGGCCGTCGCCGGTCT
CGCCGGACGGATGTTGGGAGGGGATCCGCTGCAGGTGA
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protein sequence of NO06G04280.1

>NO06G04280.1-protein ID=NO06G04280.1-protein|Name=NO06G04280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MERGRRRAKRTPSLYVLLPSLLIVLLSLSHIRFTFVPIHGRRRRKGGGGR
RKGGGPVSLYDILVASEAARSGQNHHHQQQHQQHQHQRQQRHRPGSSACG
KGGGGGRGEGGGGGGGGGGGGRGGGGGGGRGGGGTLTTGGRDGVGGTMTP
LSHYMSIIGLGPPKRKKLTTLKKKILMNRLQDFTQQMMQRQQQQQQQQQQ
QQQQQQQHQQQHQQQQQQQQQQQQQQQQGHHSSSLSSFSGGGGREGERER
GREGGTTVIVFHDAVSEEQLEDKEELAELQANIAHVCRPFGRLQSLYIPP
TRPMMPGSFSSPIPPPTKRSRPSPVSPDGCWEGIRCR*
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mRNA from alignment at chr6:1200303..1202166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04280.1 ID=NO06G04280.1|Name=NO06G04280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at chr6:1200303..1202166- (Nannochloropsis oceanica)
TGGGGGGGGCAAGAGATCAGGAGCGGGGACAACACGAGCGGTCTTACCCC
ACCCGGCTCCCCCCCTCTCGGTCTCTTCCTCCTCCTCGACCTCCTACTCC
CGCCCTTTCCCACTGCCTCCACCACTATCCGCGGGCCCGCACACTGCTGG
GCTGGGAAGAGGGAGAGGAGAGGGATGGAGAGGGGGCGAAGGCGCGCCAA
GAGGACACCCTCCCTATATGTCCTCCTCCCCTCCCTCCTCATCGTCCTCC
TTAGCCTCAGCCACATCCGCTTCACCTTCGTTCCTATCCACGGCAGGAGA
AGGAGGAAGGGGGGGGGGGGGAGGCGAAAAGGTGGAGGGCCTGTGTCATT
GTACGATATTCTAGTGGCGTCCGAAGCGGCTAGAAGGTGAGAGGGGATGG
AGAGGGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAT
TTTTGTCGTGGGGAAATATGGAGGGAAGATTCATTTCAGCCTAGACAATT
CATCCTCTATCCCTCCCTCCTTCCCTTCCTCCCTCCCATCCGACTCGCCG
ACCCGCTCATGATAGCGGGCAGAACCACCACCATCAGCAGCAGCACCAGC
AGCACCAGCACCAGCGCCAGCAGCGCCACAGGCCAGGCAGCTCTGCTTGT
GGGAAAGGCGGTGGAGGAGGACGGGGGGAAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAG
GAGGGACACTGACGACAGGAGGGAGGGACGGAGTGGGGGGTACGATGACT
CCTTTATCCCATTACATGAGCATTATAGGTCTGGGCCCTCCCAAGAGAAA
GAAGCTGACGACGCTCAAGAAGAAGATATTGATGGTGAGGCTGTCCCCTC
CGTCCCTCCCTCCCCCCTCCCTCCCTCGCCCTTCTTCATCCATTTCCCTC
ATCATTTCCCTCCGAGTTTTTGGACGGCCAGATCACGCACTCTCCATACT
TTCCCTCCCTCCCTCCCTCCCTCCCTCACTCACTCACTCCCTCCTTCCTT
CCTTCCATTATTACCTCAGAATCGGCTACAAGACTTTACTCAGCAAATGA
TGCAACGACAGCAGCAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACACCAACAACAACACCAACAACAACAACAGCAACAGCAGCA
GCAACAGCAGCAGCAGCAGCAAGGGCACCATTCATCCTCCCTCTCCTCAT
TTTCTGGCGGAGGAGGGAGAGAGGGAGAGAGGGAGAGAGGGAGGGAGGGA
GGGACGACCGTGATTGTCTTTCACGATGCCGTCTCTGAGGAACAATTAGA
GGACAAGGAAGAGCTTGCAGAGCTACAGGTGCACATAAAGAAGGAGGGAG
GGAGGGAGGGATGGAGGGAGGAAAGAAGTGGGGGAAGAAGGTTTAAGAGG
GAGGGATACGGGAAGTGTGGGTGCATGTACTTCGGTGTCGTTGCGCTCAA
CCCTACCCCCCTCCCTTCCTTCCTCCCTTCCTCCCTCCCTCCGTCAGGCC
AATATCGCCCATGTCTGTCGCCCATTCGGTCGTCTCCAGTCTCTCTATAT
CCCCCCCACGAGGCCCATGATGCCGGGCTCATTTTCGTCGCCTATTCCAC
CCCCAACGAAGCGCTCGCGGGTACGTTTTAACGGCTTGCTTTCCCTCTCT
CTCCCCTTTTATCTATCAATCTATCTCTCTTTTTTCCCTCTCTCTCTCTC
TTGCTGCTGACATCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCTTAGCCGTCGCCGGTCTCGCCGGACGGATGTTGGGAGGGGA
TCCGCTGCAGGTGA
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Coding sequence (CDS) from alignment at chr6:1200303..1202166-

>NO06G04280.1 ID=NO06G04280.1|Name=NO06G04280.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr6:1200303..1202166- (Nannochloropsis oceanica)
ATGGAGAGGGGGCGAAGGCGCGCCAAGAGGACACCCTCCCTATATGTCCT
CCTCCCCTCCCTCCTCATCGTCCTCCTTAGCCTCAGCCACATCCGCTTCA
CCTTCGTTCCTATCCACGGCAGGAGAAGGAGGAAGGGGGGGGGGGGGAGG
CGAAAAGGTGGAGGGCCTGTGTCATTGTACGATATTCTAGTGGCGTCCGA
AGCGGCTAGAAGCGGGCAGAACCACCACCATCAGCAGCAGCACCAGCAGC
ACCAGCACCAGCGCCAGCAGCGCCACAGGCCAGGCAGCTCTGCTTGTGGG
AAAGGCGGTGGAGGAGGACGGGGGGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAG
GGACACTGACGACAGGAGGGAGGGACGGAGTGGGGGGTACGATGACTCCT
TTATCCCATTACATGAGCATTATAGGTCTGGGCCCTCCCAAGAGAAAGAA
GCTGACGACGCTCAAGAAGAAGATATTGATGAATCGGCTACAAGACTTTA
CTCAGCAAATGATGCAACGACAGCAGCAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACACCAACAACAACACCAACAACAACAACA
GCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAAGGGCACCATTCATCCT
CCCTCTCCTCATTTTCTGGCGGAGGAGGGAGAGAGGGAGAGAGGGAGAGA
GGGAGGGAGGGAGGGACGACCGTGATTGTCTTTCACGATGCCGTCTCTGA
GGAACAATTAGAGGACAAGGAAGAGCTTGCAGAGCTACAGGCCAATATCG
CCCATGTCTGTCGCCCATTCGGTCGTCTCCAGTCTCTCTATATCCCCCCC
ACGAGGCCCATGATGCCGGGCTCATTTTCGTCGCCTATTCCACCCCCAAC
GAAGCGCTCGCGGCCGTCGCCGGTCTCGCCGGACGGATGTTGGGAGGGGA
TCCGCTGCAGGTGA
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Synonyms
Publications