NO06G04250, NO06G04250 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G04250 vs. NCBI_GenBank
Match: EWM26416.1 (hypothetical protein Naga_102147g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 112.8 bits (281), Expect = 2.700e-21 Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 0 Query: 307 MPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSI----------PTLWGRRPALGAYWSLFPSLRLMLRL 375 MPNGHYLLGAVGK LNYLALRYGLAVVVTNGVVL+ SS SI P+LWG RPALG YWS++PSLRLMLRL Sbjct: 1 MPNGHYLLGAVGKTLNYLALRYGLAVVVTNGVVLDRSSTPSIPSSSASSAPSPSLWGCRPALGVYWSIYPSLRLMLRL 78
BLAST of NO06G04250 vs. NCBI_GenBank
Match: XP_021681159.1 (DNA repair protein RAD51 homolog 4 isoform X1 [Hevea brasiliensis]) HSP 1 Score: 110.5 bits (275), Expect = 1.300e-20 Identity = 80/237 (33.76%), Postives = 113/237 (47.68%), Query Frame = 0 Query: 141 MSTGIKSLDQLLSDSGGGVPLSQVTELVGPSPSGKTQLCLTLAAEVALTLSASVLYLDTNGCFCPRRL----RQIVGEKYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDACLSRVSVLRVSNEKGLFAALDSLDQHL-SCGHPLHRNLRLLVLDSLRALLAPLLGQTMPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSIPTLWGRRPALGAYWSLFPSLRLML 373 +STG K +D+LL GG+ Q+TELVGPS SGKTQLCL +AA VA+ V++LDT F PRR+ RQI G + + +S + + +F L L+ L S GH R L++DS+ +L+ P+LG + P GH L+ + G +L LA +AV+VTN +V +PALG W P +RL+L Sbjct: 89 LSTGFKGIDKLLE---GGLREGQLTELVGPSSSGKTQLCLRVAANVAIQHKGRVIFLDTGNSFSPRRIEHFVRQISGSVFN-------------------------------EKVMSNILCHSTFDIFSMFDVLHQLENSLKSQGHKGDCKARTLIVDSISSLITPILGGSGPQGHALMTSAGFLLKKLAHELNIAVLVTNHMVAGEGG--------NLKPALGESWKSIPHVRLLL 283
BLAST of NO06G04250 vs. NCBI_GenBank
Match: XP_021681163.1 (DNA repair protein RAD51 homolog 4 isoform X4 [Hevea brasiliensis]) HSP 1 Score: 110.5 bits (275), Expect = 1.300e-20 Identity = 80/237 (33.76%), Postives = 113/237 (47.68%), Query Frame = 0 Query: 141 MSTGIKSLDQLLSDSGGGVPLSQVTELVGPSPSGKTQLCLTLAAEVALTLSASVLYLDTNGCFCPRRL----RQIVGEKYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDACLSRVSVLRVSNEKGLFAALDSLDQHL-SCGHPLHRNLRLLVLDSLRALLAPLLGQTMPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSIPTLWGRRPALGAYWSLFPSLRLML 373 +STG K +D+LL GG+ Q+TELVGPS SGKTQLCL +AA VA+ V++LDT F PRR+ RQI G + + +S + + +F L L+ L S GH R L++DS+ +L+ P+LG + P GH L+ + G +L LA +AV+VTN +V +PALG W P +RL+L Sbjct: 69 LSTGFKGIDKLLE---GGLREGQLTELVGPSSSGKTQLCLRVAANVAIQHKGRVIFLDTGNSFSPRRIEHFVRQISGSVFN-------------------------------EKVMSNILCHSTFDIFSMFDVLHQLENSLKSQGHKGDCKARTLIVDSISSLITPILGGSGPQGHALMTSAGFLLKKLAHELNIAVLVTNHMVAGEGG--------NLKPALGESWKSIPHVRLLL 263
BLAST of NO06G04250 vs. NCBI_GenBank
Match: XP_021681162.1 (DNA repair protein RAD51 homolog 4 isoform X3 [Hevea brasiliensis]) HSP 1 Score: 110.5 bits (275), Expect = 1.300e-20 Identity = 80/237 (33.76%), Postives = 113/237 (47.68%), Query Frame = 0 Query: 141 MSTGIKSLDQLLSDSGGGVPLSQVTELVGPSPSGKTQLCLTLAAEVALTLSASVLYLDTNGCFCPRRL----RQIVGEKYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDACLSRVSVLRVSNEKGLFAALDSLDQHL-SCGHPLHRNLRLLVLDSLRALLAPLLGQTMPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSIPTLWGRRPALGAYWSLFPSLRLML 373 +STG K +D+LL GG+ Q+TELVGPS SGKTQLCL +AA VA+ V++LDT F PRR+ RQI G + + +S + + +F L L+ L S GH R L++DS+ +L+ P+LG + P GH L+ + G +L LA +AV+VTN +V +PALG W P +RL+L Sbjct: 73 LSTGFKGIDKLLE---GGLREGQLTELVGPSSSGKTQLCLRVAANVAIQHKGRVIFLDTGNSFSPRRIEHFVRQISGSVFN-------------------------------EKVMSNILCHSTFDIFSMFDVLHQLENSLKSQGHKGDCKARTLIVDSISSLITPILGGSGPQGHALMTSAGFLLKKLAHELNIAVLVTNHMVAGEGG--------NLKPALGESWKSIPHVRLLL 267
BLAST of NO06G04250 vs. NCBI_GenBank
Match: XP_021681160.1 (DNA repair protein RAD51 homolog 4 isoform X2 [Hevea brasiliensis]) HSP 1 Score: 109.8 bits (273), Expect = 2.300e-20 Identity = 77/233 (33.05%), Postives = 111/233 (47.64%), Query Frame = 0 Query: 141 MSTGIKSLDQLLSDSGGGVPLSQVTELVGPSPSGKTQLCLTLAAEVALTLSASVLYLDTNGCFCPRRLRQIVGEKYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDACLSRVSVLRVSNEKGLFAALDSLDQHL-SCGHPLHRNLRLLVLDSLRALLAPLLGQTMPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSIPTLWGRRPALGAYWSLFPSLRLML 373 +STG K +D+LL GG+ Q+TELVGPS SGKTQLCL +AA VA+ V++LDT F PRR+ V + + + +S + + +F L L+ L S GH R L++DS+ +L+ P+LG + P GH L+ + G +L LA +AV+VTN +V +PALG W P +RL+L Sbjct: 89 LSTGFKGIDKLLE---GGLREGQLTELVGPSSSGKTQLCLRVAANVAIQHKGRVIFLDTGNSFSPRRIEHFVRQ----------------------------ISGSVFNEVMSNILCHSTFDIFSMFDVLHQLENSLKSQGHKGDCKARTLIVDSISSLITPILGGSGPQGHALMTSAGFLLKKLAHELNIAVLVTNHMVAGEGG--------NLKPALGESWKSIPHVRLLL 282
BLAST of NO06G04250 vs. NCBI_GenBank
Match: KZV23933.1 (hypothetical protein F511_23077 [Dorcoceras hygrometricum]) HSP 1 Score: 108.2 bits (269), Expect = 6.600e-20 Identity = 82/235 (34.89%), Postives = 117/235 (49.79%), Query Frame = 0 Query: 141 MSTGIKSLDQLLSDSGGGVPLSQVTELVGPSPSGKTQLCLTLAAEVALTLSASVLYLDTNGCFCPRRLRQIVGEKYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDACLSRV--SVLRVSNEKGLFAALDSLDQHL-SCGHPLHRNLRLLVLDSLRALLAPLLGQTMPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSIPTLWGRRPALGAYWSLFPSLRLML 373 +STG + +D LL GG+ VTELVGPS SGKTQ+CL A+ +A S V+Y D+ F P+R+ Q + + + +D L RV S+L S +FA LD L Q L + +R+L+LDSL +L+AP+LG +GH L+ + G +L LA + L+VVVTN +V + S +PALG W P +RL+L Sbjct: 88 LSTGCERIDVLLQ---GGLREGHVTELVGPSSSGKTQICLQAASNIAKNYSGMVMYFDSGNSFSPKRMAQFLNQSFNPDNSE-------------------------VDQILERVMSSILHYS-VFDIFALLDLLHQLLHDFKSQMCFQVRMLILDSLSSLIAPVLGGGGAHGHALMVSTGFLLKELAHEHNLSVVVTNHMVAGEAGAS--------KPALGESWKNIPHVRLLL 285
BLAST of NO06G04250 vs. NCBI_GenBank
Match: XP_002128226.1 (PREDICTED: DNA repair protein RAD51 homolog 4-like [Ciona intestinalis]) HSP 1 Score: 105.9 bits (263), Expect = 3.300e-19 Identity = 78/243 (32.10%), Postives = 120/243 (49.38%), Query Frame = 0 Query: 133 EGVGEGGAMSTGIKSLDQLLSDSGGGVPLSQVTELVGPSPSGKTQLCLTLAAEVALTLSASVLYLDTNGCFCPRRLRQIVGEKYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDACLSRVSVLRVSNEKGLFAALDSLDQHLSC-GHPLHRNLRLLVLDSLRALLAPLL-GQTMPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSIPTLWGRRPALGAYWSLFPSLRLMLR 374 E +G + TG +SLD LL G+ +VTE+VGPS SGKTQLC T A VA + +V+Y+DT G F R+ +I +++ A LSR+ V R L LD + + +S +L+++++DS+ +LL+ +L T G L ++G+ LN LA + LAVV+TN +V + P + R+PALG W+ PS+R+ L+ Sbjct: 74 ETMGTLAVLPTGCESLDDLLD---AGIYTGEVTEIVGPSSSGKTQLCETFAVNVAASFDQNVIYIDTAGGFSAVRVGEIFKKRFSSHN---------------------------TSATLSRIRVSRCFEVSELRETLDLVRRKMSAQDETFFSSLKVVIIDSVTSLLSTVLYNGTFVEGMASLQSIGRQLNALAKDFALAVVITNDMV---TGPQDKTGQFSRKPALGRVWTFVPSVRVQLQ 283
BLAST of NO06G04250 vs. NCBI_GenBank
Match: XP_021627642.1 (DNA repair protein RAD51 homolog 4 isoform X1 [Manihot esculenta] >OAY37868.1 hypothetical protein MANES_11G135500 [Manihot esculenta]) HSP 1 Score: 105.9 bits (263), Expect = 3.300e-19 Identity = 77/233 (33.05%), Postives = 115/233 (49.36%), Query Frame = 0 Query: 141 MSTGIKSLDQLLSDSGGGVPLSQVTELVGPSPSGKTQLCLTLAAEVALTLSASVLYLDTNGCFCPRRLRQIVGEKYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDACLSRVSVLRVSNEKGLFAALDSLDQHL-SCGHPLHRNLRLLVLDSLRALLAPLLGQTMPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSIPTLWGRRPALGAYWSLFPSLRLML 373 +STG + +D+LL GGGV Q+TELVGPS SGKTQLCL +AA VA+ V+++DT F PRR+ + + L + +S + + +F L L+ L S G +++L++DS+ +L+ +LG + P GH L+ A G +L LA + +AV+VTN +V TL +PALG W P +RL+L Sbjct: 89 LSTGFEEIDKLL---GGGVREGQLTELVGPSSSGKTQLCLRVAANVAIQHVGRVIFMDTGNSFSPRRIEHFIHQ---------------------------ISDSVLSEKVMSNILCYSTFDIFSMFDVLQQLENSLKSQGPKGDCKVQMLIVDSISSLITHVLGGSGPQGHALMTAAGFLLKKLAHEHNIAVLVTNHMVAGEGG-----TL---KPALGESWKSIPHVRLLL 283
BLAST of NO06G04250 vs. NCBI_GenBank
Match: XP_021627643.1 (DNA repair protein RAD51 homolog 4 isoform X2 [Manihot esculenta]) HSP 1 Score: 105.9 bits (263), Expect = 3.300e-19 Identity = 77/233 (33.05%), Postives = 115/233 (49.36%), Query Frame = 0 Query: 141 MSTGIKSLDQLLSDSGGGVPLSQVTELVGPSPSGKTQLCLTLAAEVALTLSASVLYLDTNGCFCPRRLRQIVGEKYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDACLSRVSVLRVSNEKGLFAALDSLDQHL-SCGHPLHRNLRLLVLDSLRALLAPLLGQTMPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSIPTLWGRRPALGAYWSLFPSLRLML 373 +STG + +D+LL GGGV Q+TELVGPS SGKTQLCL +AA VA+ V+++DT F PRR+ + + L + +S + + +F L L+ L S G +++L++DS+ +L+ +LG + P GH L+ A G +L LA + +AV+VTN +V TL +PALG W P +RL+L Sbjct: 73 LSTGFEEIDKLL---GGGVREGQLTELVGPSSSGKTQLCLRVAANVAIQHVGRVIFMDTGNSFSPRRIEHFIHQ---------------------------ISDSVLSEKVMSNILCYSTFDIFSMFDVLQQLENSLKSQGPKGDCKVQMLIVDSISSLITHVLGGSGPQGHALMTAAGFLLKKLAHEHNIAVLVTNHMVAGEGG-----TL---KPALGESWKSIPHVRLLL 267
BLAST of NO06G04250 vs. NCBI_GenBank
Match: XP_015952308.1 (DNA repair protein RAD51 homolog 4 [Arachis duranensis]) HSP 1 Score: 105.5 bits (262), Expect = 4.300e-19 Identity = 78/234 (33.33%), Postives = 112/234 (47.86%), Query Frame = 0 Query: 141 MSTGIKSLDQLLSDSGGGVPLSQVTELVGPSPSGKTQLCLTLAAEVALTLSASVLYLDTNGCFCPRRLRQIVGEKYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDACLSRVSVLRVSNEKGLFAALDSLDQHLSCG--HPLHRNLRLLVLDSLRALLAPLLGQTMPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSIPTLWGRRPALGAYWSLFPSLRLML 373 + TG K +D LL GGG+ Q+TELVGPS SGKTQ CLT A+ VA SV+Y DT F P+ + +VG+ L + R+ V + +F L L +L P R ++LL++DS+ +L+ P+LG + P GH L+ + G +L LA + +AV+VTN +V S +PALG W P +RL+L Sbjct: 89 LPTGFKGIDALL---GGGLRAGQLTELVGPSSSGKTQACLTSASTVAKN-GGSVIYFDTGNSFSPQHIAHLVGQTSSYVIGNQAEPGP-------------------LQKVMERIICYSVFDIYQMFDVLQQLKINLKSKIVEP-DRRVQLLIVDSISSLITPILGGSGPQGHALMISAGYLLKKLADEHNIAVLVTNHMVAGEGGTS--------KPALGESWKSVPHIRLLL 290 The following BLAST results are available for this feature:
BLAST of NO06G04250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G04250 ID=NO06G04250|Name=NO06G04250|organism=Nannochloropsis oceanica|type=gene|length=4382bpback to top protein sequence of NO06G04250.1 >NO06G04250.1-protein ID=NO06G04250.1-protein|Name=NO06G04250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bpback to top Synonyms
Publications
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