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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:1184152..1188533 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G04250.1 vs.
Match: EWM26416.1 (hypothetical protein Naga_102147g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 124.4 bits (311), Expect = 9.000e-25 Identity = 67/91 (73.63%), Postives = 71/91 (78.02%), Query Frame = 0
Query: 307 MPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSI----------PTLWGRRPALGAYWSLFPSLRLMLRLGGGGGRGGGREGG 388
MPNGHYLLGAVGK LNYLALRYGLAVVVTNGVVL+ SS SI P+LWG RPALG YWS++PSLRLMLRL GG GGGREGG
Sbjct: 1 MPNGHYLLGAVGKTLNYLALRYGLAVVVTNGVVLDRSSTPSIPSSSASSAPSPSLWGCRPALGVYWSIYPSLRLMLRLHGG---GGGREGG 88
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G04250.1 ID=NO06G04250.1|Name=NO06G04250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2795bp ACCACCGCTTCCTACTCGCATTGGCCAGCGTAATCCTGGCCCTTCTCGTA TTCTCGCTCATCATCTTTCGCTTTCATTACACTGCAGACGTCGTGACAGC CTTGTACGTGACAATGGGTGGATGGTTTCTCATGCCGCAAGAGCCGGTGA CGCTGAACAAATATTGGGTTACATGCCAATGTTTCGATGCTTTCGACCGG CTATATGACCACAGATACTGATCCTCACGGGGCGTATGACGTTGTGCAAT ACTTAGAAACCGATGAAGAGCTGCAAGGAGAGACCTTGTGGAAAAAAAAA GAAGAGTTGGCTGAAGAGGAAGGTGAACGAGAGGGAATAGCGTCTAGACG TCGGACCTGTGGGCAACGACGACACAGAGGAGGTCCAAAAGTAAGGTATG TCTCTCGTTTGCCTTCTACAGGGGTATCTTTGGTAGAAGAGGAGGATCGC TCAGCAATTGAGCGGACTCTCGAACGTCTTCCATATTACAGAGTGAAATG AAACGAAAACGATTTATGATCACCCCGATTGTTGTGTACTGTCATTTCCT CCTTCTGTATCTCTCTCTTTAGTCTTAACCATGTGTCTCATGTCATACCC TGTCGAACATTTATTCCTGGTACCCCCGTTCATTTTTTCGGCTATCAAAA AAAGAATATTGATGCACAAATGGGAGATTCTACGCAATTGAGAGCACATC GATACTTCTCTCATCCACACTCTATGCGAACGGCACCGCTTTCGGTAAAT AACATGTTTACCAGTTTTGAATGTGGACATACGATTAAGTTTCATAAGTA TAGTTGCATTAGCTGCAACGCCAATTCACTTTTGGGAAATAGCTCCAGAG AAGGTAATTGCAAGGGTATGCGAGCGAAGCTGTTATTTGAAAGAAAGAGT ATGGATACGACTAATCAAGCCCGAGTACGCTCAAACACATAGTAAGGTAC CTTTTGAAGGCCAAGCATCACAGATAGGTTACTGCAATACCAGCTCTAAG TCAGACAAGCACATCGCGGAGCAGGTCCACGCTAAGCGTTGGGGCGTGAG TGAGGATGCACGAAAGGATGAACGCGATTTACCCCCCCGCGAAAGACGTT GCTGAGCCGTATCGTCCATTTCTGCGCACGTCAAGCAATTACTTCCCTCA ATGTTTCTACTCCCATGCCTCCCTGCAGACGCGCACGAAGAACACATCCT CATAATGCCGCGCCTAGATGCGCTGGGGGTCACACCCCAGGTGCGCGCGG CATTAGGATCCGACGTCGAGACCGCCGAGGAGCTTTTCATGATGGCGCCC GGCGGCAGGGGAGGAGGAGGAGGAATGCGAGGCACAGGGCTTGGCAAGCA GGAGCTACAACTCCTGCAAGTTGCCGTGGCAGAAAAAACCGGCCCCGACA CCTACCTCCATGCCTCTCTCTCTTCGTCCTCCATTTGTTCCACGGAAGCG ATTCAATCCGAAGGAAAGGAAGAGGGAGGAGGGAGGAAACGAAGGGCGGT TTTGCCTGGGTTGGACTGCGCGTGTGCTCACTGGAAGCACCAGCTTGAGG GGGTGGGGGAAGGAGGTGCAATGAGCACGGGGATCAAGAGTCTTGACCAG CTGCTGTCTGACAGCGGTGGGGGCGTGCCTCTGTCGCAAGTAACCGAGCT GGTGGGGCCATCCCCCTCAGGCAAGACGCAGCTCTGCCTCACCCTCGCGG CTGAGGTGGCGCTCACTCTGTCGGCCAGCGTACTCTACCTTGACACCAAC GGCTGCTTCTGCCCCCGACGACTGCGTCAGATCGTAGGAGAAAAGTACCA GCGTCAACAACGACAACTCCAAGAAGCATCCTCTTCCTCCTCCCTCCCTT CCCCCCTCCCTCCCGACCTCCCTCCTCCTCCCCCCTCTCTGCTGGACGCC TGCCTGTCACGGGTATCGGTGCTGCGAGTGAGTAACGAAAAGGGGCTATT CGCGGCCTTGGACAGCCTTGACCAGCATCTGAGCTGCGGGCACCCCCTGC ACCGGAATCTCCGCCTCCTCGTCCTCGACTCCCTTCGCGCCCTCCTTGCT CCGCTTCTTGGCCAGACCATGCCCAACGGCCACTACTTGTTGGGAGCGGT GGGGAAGATGTTAAACTACCTCGCATTGCGCTACGGCCTCGCCGTGGTGG TGACCAACGGTGTCGTCCTCGAACACAGCTCGCCCTCCTCTATCCCCACC CTCTGGGGCCGCCGACCCGCGCTAGGCGCCTATTGGTCCCTTTTCCCTTC CCTTCGTCTGATGCTTCGTTTGGGTGGAGGGGGAGGAAGGGGGGGAGGGA GGGAGGGGGGAGGGGATGAAGCGGAGGAGGACTTCGTGTTGGGGGAGGTG GCGGTGTATAGTGCCACGTCTCAGGACACTGCTCCTCCTCCCCCCTCTCC TCCCCTTCCTGGACAGTCCCACCAGGCCCTCCGTCCGTCTCTTCCTCCCT CCCTCCCCCGCACCTTCTTCCGGATCGACGCCAGTGGTGTGCGTGATGTC CTCTGAGACCGAGGGAGGGAGGGAGGGAGGGAGAGAAGGAGAGAGGGAGA GAGGGAGGGGTGCATGTGTAAATCATAGAGAGCTGCTGCTGCTGCTGCTG CTGCTGCTGCTGCTATCGTTCCGGGTATGCAGCAAAGGGAAAAGGACGAG AGAAAAGCATAAATACTGTATACAGAAATCGCTGGCTGTCACCTCCGCGG GCCGGAGACGCCTCGGAATAGTCTTAATCCATTTTTCCTCCGCTCGGGTG GGTGCGCGGAGTACAATGTTAATCAAATCAAATTAGCTTTCTAGG back to topprotein sequence of NO06G04250.1 >NO06G04250.1-protein ID=NO06G04250.1-protein|Name=NO06G04250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=452bp MFLLPCLPADAHEEHILIMPRLDALGVTPQVRAALGSDVETAEELFMMAP GGRGGGGGMRGTGLGKQELQLLQVAVAEKTGPDTYLHASLSSSSICSTEA IQSEGKEEGGGRKRRAVLPGLDCACAHWKHQLEGVGEGGAMSTGIKSLDQ LLSDSGGGVPLSQVTELVGPSPSGKTQLCLTLAAEVALTLSASVLYLDTN GCFCPRRLRQIVGEKYQRQQRQLQEASSSSSLPSPLPPDLPPPPPSLLDA CLSRVSVLRVSNEKGLFAALDSLDQHLSCGHPLHRNLRLLVLDSLRALLA PLLGQTMPNGHYLLGAVGKMLNYLALRYGLAVVVTNGVVLEHSSPSSIPT LWGRRPALGAYWSLFPSLRLMLRLGGGGGRGGGREGGGDEAEEDFVLGEV AVYSATSQDTAPPPPSPPLPGQSHQALRPSLPPSLPRTFFRIDASGVRDV L* back to topmRNA from alignment at chr6:1184152..1188533- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G04250.1 ID=NO06G04250.1|Name=NO06G04250.1|organism=Nannochloropsis oceanica|type=mRNA|length=4382bp|location=Sequence derived from alignment at chr6:1184152..1188533- (Nannochloropsis oceanica) ACCACCGCTTCCTACTCGCATTGGCCAGCGTAATCCTGGCCCTTCTCGTA
TTCTCGCTCATCATCTTTCGCTTTCATTACACTGCAGACGTCGTGACAGC
CTTGTACGTGACAATGGGTGGATGGTTTCTCATGCCGCAAGAGCCGGTGA
CGCTGAACAAATATTGGGTTACATGCCAATGTTTCGATGCTTTCGACCGG
CTATATGACCACAGATACTGATCCTCACGGGGCGTATGACGTTGTGCAAT
ACTTAGAAACCGATGAAGAGCTGCAAGGAGAGACCTTGTGGAAAAAAAAA
GAAGAGTTGGCTGAAGAGGAAGGTGAACGAGAGGGAATAGCGTCTAGACG
TCGGACCTGTGGGCAACGACGACACAGAGGAGGTCCAAAAGTAAGGTATG
TCTCTCGTTTGCCTTCTACAGGGGTATCTTTGGTAGAAGAGGAGGATCGC
TCAGCAATTGAGCGGACTCTCGAACGTCTTCCATATTACAGAGTGAAATG
AAACGAAAACGATTTATGATCACCCCGATTGTTGTGTACTGTCATTTCCT
CCTTCTGTATCTCTCTCTTTAGTCTTAACCATGTGTCTCATGTCATACCC
TGTCGAACATTTATTCCTGGTACCCCCGTTCATTTTTTCGGCTATCAAAA
AAAGAATATTGATGCACAAATGGGAGATTCTACGCAATTGAGAGCACATC
GATACTTCTCTCATCCACACTCTATGCGAACGGCACCGCTTTCGGTAAAT
AACATGTTTACCAGTTTTGAATGTGGACATACGATTAAGTTTCATAAGTA
TAGTTGCATTAGCTGCAACGCCAATTCACTTTTGGGAAATAGCTCCAGAG
AAGGTAATTGCAAGGGTATGCGAGCGAAGCTGTTATTTGAAAGAAAGAGT
ATGGATACGACTAATCAAGCCCGAGTACGCTCAAACACATAGTAAGGTAC
CTTTTGAAGGCCAAGCATCACAGATAGGTTACTGCAATACCAGCTCTAAG
TCAGACAAGCACATCGCGGAGCAGGTCCACGCTAAGCGTTGGGGCGTGAG
TGAGGATGCACGAAAGGATGAACGCGATTTACCCCCCCGCGAAAGACGTT
GCTGAGCCGTATCGTCCATTTCTGCGCACGTCAAGCAATTACTTCCCTCA
ATGTTTCTACTCCCATGCCTCCCTGCAGACGCGCACGAAGAACACATCCT
CATAATGCCGCGCCTAGATGCGCTGGGGGTCACACCCCAGGTGCGCGCGG
CATTAGGATCCGACGTCGAGACCGCCGAGGAGCTTTTCATGATGGCGCCC
GGCGGCAGGGGAGGAGGAGGAGGAATGCGAGGCACAGGGCTTGGCAAGCA
GGTATGTATGGAGAATGGAAGGGGATAGATGGGAATAAGGACGTGAGGAA
TGTTTATAGGTGGATTGTGGTTGTGTTCAGTGGCCTAGGAGGATGATGGA
CCAGCTCGCTTGATCGGCGGGAGGTAAGGAGGAGGCGGCTGCTCAGCATA
CGTGGAGGAGGAGAAGGGAATGCCTGTATTCATATTTCGACACACTACCT
ACTCTGTCATCATCCCTCCTTCTCCCGATCCCTCCCTCCAACACCCACAC
CATTACCCTCCCTCCCTGCCCCCCCCCTCCCTCTCTTGCGTCCAGGAGCT
ACAACTCCTGCAAGTTGCCGTGGCAGAAAAAACCGGCCCCGACACCTACC
TCCATGCCTCTCTCTCTTCGTCCTCCATTTGTTCCACGGAAGCGATTCAA
TCCGAAGGAAAGGAAGAGGGAGGAGGGAGGAAACGAAGGGCGGTTTTGCC
TGGGTTGGACTGCGCGTGTGCTCACTGGAAGCACCAGCTTGAGGGGGTGG
GGGAAGGAGGTGCAATGAGCACGGGGATCAAGAGGTAAGCTTCGCAAAAG
AAGGGAGGGAAGGAGGGAAGGAAGGAGGGAAGGAAGGAGGGAAGGAAGGG
GGGTGCTTTTAATTGATGTCCACGCACTCTTTTTGCCGACCTCATCTCCA
CCCTCCCCTGTCCTCTCCCCCTCCTTCCTTCCTCCCCTCCCTCTCTCCCT
CCACCCTTCCTTCCTCCCTTCTCAATTTCCCTATCCAGTCTTGACCAGCT
GCTGTCTGACAGCGGTGGGGGCGTGCCTCTGTCGCAAGTAACCGAGCTGG
TGGGGCCATCCCCCTCAGGCAAGACGCAGGTGAAGACGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGAAAGGCCTTCTTACGAC
TCTGTCCGATTCATCTCGAGTTTTGCCTACCTTCCTTCCCATCCCTCCCC
CCCCCTCTTCCCCTCCCGCCTGCAGCTCTGCCTCACCCTCGCGGCTGAGG
TGGCGCTCACTCTGTCGGCCAGCGTACTCTACCTTGACACCAACGGCTGC
TTCTGCCCCCGACGACTGCGTCAGATCGTAGGAGAAAAGGTGAGGAAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGAGGCATAGGAGGAAGGGAGGGCA
CATATGCTCAGCTGCGCGTCTGTTTGTGTAAGTCACTTTCCACCCTTTGC
CTCCCTCCCTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCTTCCCT
CCCTCCCTCCCTTCCTCCCTCACAGTACCAGCGTCAACAACGACAACTCC
AAGAAGCATCCTCTTCCTCCTCCCTCCCTTCCCCCCTCCCTCCCGACCTC
CCTCCTCCTCCCCCCTCTCTGCTGGACGCCTGCCTGTCACGGGTATCGGT
GCTGCGAGTGAGTAACGAAAAGGGGCTATTCGCGGCCTTGGACAGCCTTG
ACCAGCATCTGAGCTGCGGGGTAGGTAGGGAGGGAGGGAGGGAGAGAGGG
AGGGAGAGAGGGAGGGAGGGAGGGAGGGCAGAAGGCACAAACACATCTGA
ACCACTCTATCAATCCACAGCACCCCCTGCACCGGAATCTCCGCCTCCTC
GTCCTCGACTCCCTTCGCGCCCTCCTTGCTCCGCTTCTTGGCCAGACCAT
GCCCAACGGTAGGCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCTCTCCCTCCCCTCCATTCCACCATCTGTTCTCACCCATCCACCAGCC
CACCTCCCTCCCGCCCGCTCTCCCTCTCTCCCTCCCTCGCTTTCATAGGC
CACTACTTGTTGGGAGCGGTGGGGAAGATGTTAAACTACCTCGCATTGCG
CTACGGCCTCGCCGTGGTGGTAAGCCCCCTCCCTCCCTCCCTCCCTCCCT
CCATTCCTTTCTCCCTCCCTTTTCCCCTCCATTCCTTCCTCACCTCCCAC
AGCCCTCTCTGCGCTCCTTCTTGAAATGTCCTCGTCATTCACCGTAGACC
TCCCCCTCCTCCCCCCCTCCCTCCCTCCATCCCAGGTGACCAACGGTGTC
GTCCTCGAACACAGCTCGCCCTCCTCTATCCCCACCCTCTGGGGCCGCCG
ACCCGCGCTAGGTACGTCAATTAGGAGGGAGAGAGGGAGGGAGGGAGGTA
GAGAGGGAGAGAGGGAGGGAGGGAAACTGAATGAAGTCAAAGATGTGGCT
TATACGTCTTCACATGCTGACCCGCATTCAAGTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCGCCAGGCGCCTATTGGTCCCTTTTCCCTTC
CCTTCGTCTGATGCTTCGTTTGGGTGGAGGGGGAGGAAGGGGGGGAGGGA
GGGAGGGGGGAGGGGATGAAGCGGAGGAGGACTTCGTGTTGGGGGAGGTG
GCGGTGTATAGTGCCACGTCTCAGGTAGGAAGAGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGGAGACTAGATAGACGAATCAAATGTATTGT
TTGATCCGCTGAGGCCGACAACCCCCCTCCCTTCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCA
ATCACTTGCAGGACACTGCTCCTCCTCCCCCCTCTCCTCCCCTTCCTGGA
CAGTCCCACCAGGCCCTCCGTCCGTCTCTTCCTCCCTCCCTCCCCCGCAC
CTTCTTCCGGATCGACGCCAGTGGTGTGCGTGATGTCCTCTGAGACCGAG
GGAGGGAGGGAGGGAGGGAGAGAAGGAGAGAGGGAGAGAGGGAGGGGTGC
ATGTGTAAATCATAGAGAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TATCGTTCCGGGTATGCAGCAAAGGGAAAAGGACGAGAGAAAAGCATAAA
TACTGTATACAGAAATCGCTGGCTGTCACCTCCGCGGGCCGGAGACGCCT
CGGAATAGTCTTAATCCATTTTTCCTCCGCTCGGGTGGGTGCGCGGAGTA
CAATGTTAATCAAATCAAATTAGCTTTCTAGG back to topCoding sequence (CDS) from alignment at chr6:1184152..1188533- >NO06G04250.1 ID=NO06G04250.1|Name=NO06G04250.1|organism=Nannochloropsis oceanica|type=CDS|length=1356bp|location=Sequence derived from alignment at chr6:1184152..1188533- (Nannochloropsis oceanica) ATGTTTCTACTCCCATGCCTCCCTGCAGACGCGCACGAAGAACACATCCT CATAATGCCGCGCCTAGATGCGCTGGGGGTCACACCCCAGGTGCGCGCGG CATTAGGATCCGACGTCGAGACCGCCGAGGAGCTTTTCATGATGGCGCCC GGCGGCAGGGGAGGAGGAGGAGGAATGCGAGGCACAGGGCTTGGCAAGCA GGAGCTACAACTCCTGCAAGTTGCCGTGGCAGAAAAAACCGGCCCCGACA CCTACCTCCATGCCTCTCTCTCTTCGTCCTCCATTTGTTCCACGGAAGCG ATTCAATCCGAAGGAAAGGAAGAGGGAGGAGGGAGGAAACGAAGGGCGGT TTTGCCTGGGTTGGACTGCGCGTGTGCTCACTGGAAGCACCAGCTTGAGG GGGTGGGGGAAGGAGGTGCAATGAGCACGGGGATCAAGAGTCTTGACCAG CTGCTGTCTGACAGCGGTGGGGGCGTGCCTCTGTCGCAAGTAACCGAGCT GGTGGGGCCATCCCCCTCAGGCAAGACGCAGCTCTGCCTCACCCTCGCGG CTGAGGTGGCGCTCACTCTGTCGGCCAGCGTACTCTACCTTGACACCAAC GGCTGCTTCTGCCCCCGACGACTGCGTCAGATCGTAGGAGAAAAGTACCA GCGTCAACAACGACAACTCCAAGAAGCATCCTCTTCCTCCTCCCTCCCTT CCCCCCTCCCTCCCGACCTCCCTCCTCCTCCCCCCTCTCTGCTGGACGCC TGCCTGTCACGGGTATCGGTGCTGCGAGTGAGTAACGAAAAGGGGCTATT CGCGGCCTTGGACAGCCTTGACCAGCATCTGAGCTGCGGGCACCCCCTGC ACCGGAATCTCCGCCTCCTCGTCCTCGACTCCCTTCGCGCCCTCCTTGCT CCGCTTCTTGGCCAGACCATGCCCAACGGCCACTACTTGTTGGGAGCGGT GGGGAAGATGTTAAACTACCTCGCATTGCGCTACGGCCTCGCCGTGGTGG TGACCAACGGTGTCGTCCTCGAACACAGCTCGCCCTCCTCTATCCCCACC CTCTGGGGCCGCCGACCCGCGCTAGGCGCCTATTGGTCCCTTTTCCCTTC CCTTCGTCTGATGCTTCGTTTGGGTGGAGGGGGAGGAAGGGGGGGAGGGA GGGAGGGGGGAGGGGATGAAGCGGAGGAGGACTTCGTGTTGGGGGAGGTG GCGGTGTATAGTGCCACGTCTCAGGACACTGCTCCTCCTCCCCCCTCTCC TCCCCTTCCTGGACAGTCCCACCAGGCCCTCCGTCCGTCTCTTCCTCCCT CCCTCCCCCGCACCTTCTTCCGGATCGACGCCAGTGGTGTGCGTGATGTC CTCTGA back to top
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