NO06G04160, NO06G04160 (gene) Nannochloropsis oceanica

Overview
NameNO06G04160
Unique NameNO06G04160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1644
Alignment locationchr6:1159596..1161239 -

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Properties
Property NameValue
DescriptionWd sam and u-box domain-containing protein 1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1159596..1161239 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0004842ubiquitin-protein transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO:0016567protein ubiquitination
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
Homology
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BLAST of NO06G04160 vs. NCBI_GenBank
Match: XP_005853577.1 (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana CCMP526] >EKU22781.1 wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 74.3 bits (181), Expect = 6.100e-10
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 0 
Query:  134 ALVCPLSLELLSKAVCAADGHTYNQDVLQAWIDRCRNDRKPLTSPLSGKPMQSFFLPNQLVKTLVRDYTE-AREKR 209
            A VCP+SLEL+++AV A DG  Y Q+ L  WI + R +  PL SP++  PM  F++P+  +++L+ DY E  R KR
Sbjct:  237 AFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHSPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKR 312
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BLAST of NO06G04160 vs. NCBI_GenBank
Match: EWM25316.1 (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 1.400e-9
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 0 
Query:  134 ALVCPLSLELLSKAVCAADGHTYNQDVLQAWIDRCRNDRKPLTSPLSGKPMQSFFLPNQLVKTLVRDYTE-AREKR 209
            A VCP+SLEL+++AV A DG  Y Q+ L  WI + R +  PL SP++  PM  F++P+  +++L+ DY E  R KR
Sbjct:  237 AFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHFPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKR 312
The following BLAST results are available for this feature:
BLAST of NO06G04160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005853577.16.100e-1044.74wd sam and u-box domain-containing protein 1 [Nann... [more]
EWM25316.11.400e-944.74wd sam and u-box domain-containing protein 1 [Nann... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04160.1NO06G04160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04160.1NO06G04160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04160 ID=NO06G04160|Name=NO06G04160|organism=Nannochloropsis oceanica|type=gene|length=1644bp
ACTACAGTTCCTGCGTTGAGCTCTTCGTGGCAGTCATGGTGCGATTCATA
CAATCACCGCGACCCAAATCAGGCAGGACGGTAAAGATGACAAGCAAAGT
CTTGTCCACCGAGAAACGCAAGCAGACCCAGAGCAAGGGTGGGAAGCAGG
CAATAATgtgagtaagaattgaaggcgttgggagcgaaggcaaggtagtg
catgaagaaagtgcgatttggagaaggcggagggagaagggattgtaggg
agccatgcggagacgaagattgcggtttgtgttggtagctgcagtctgtg
gggcgtatcacgtgacgtgacttcccttgcaggcgggcactatactttct
tctattttcgtaactcgtctaacgtaccaatgcatacagCGACGAGGAGG
CCCAGATCAAAGCACTTGAGAAGAAGGTAGCGGCATTGAGgtagggaaaa
ttttccatgtgcaaatctctacagtctaatcgtgggtgccatattttggc
ttgcatagaagattctctgcgatcttacttgtatctttttcctccctgcc
cttcattctctccatctcgtcaccacctttatcacctccagAGCTGCTCG
AAATCAAAGCAAGGGTGCAACAGTGGCGAATTGCGCGAAGAGGAGGGAAC
GGACGAATAGCAGCATCAACAGCGGCAGCAGTAAGAATGGTTATTCACGT
GCAGTGCTCTTTACCAATGAGGAAGAGGAAGGAGAGGAGGAGGAGGAAGA
GGCAGAAGAAGAGGAAGAAGAGGAGGAGGAAGAGGTGAAAGAGGAGGAGG
AGGAGAAGGAGCCGGACGCGCTGGTGTGCCCCCTGTCCCTGGAACTTTTG
TCCAAGGCCGTCTGTGCTGCGGACGGCCACACGTACAATCAGGACGTGCT
TCAGGCGTGGATTGACCGGTGCCGCAATGACCGAAAGCCGCTCACCTCCC
CTCTCTCAGGGAAGCCCATGCAGTCTTTCTTTCTTCCTAATCAGCTGGTC
AAGACATTGGTGCGCGATTATACTGAAGCACGGGAAAAGCGGGAGAATGC
AAAGGAGGGTAGGGGGAGAGAAGGGGTTTCGACGAATAAGTGGGGGAAAG
GAAAAGTCTGGGGTTCCAAGAAGGGGAAAAGGCAGAACACGAAGGAGAAC
CTGAAGGCACCAGCCAAGGCCGAGGTCCAGAAACAGAAGAAGTGAACAGA
GACATGGCCAATGAACATATGAGCATATTCGTGATAAAGAGAAAAGGATT
GTACACTTAAAACAAAAAGAGAGGAAATTTTGTCCAGCCACTGCTAATTG
CGGACGTAGGATAGCTGTAGGGGATAGAAAATTGAAGCAGCAGCAGAGCT
GCGACCAACAATACAATGTGTCATCAATTGTAGGTTCAAAATCTCATCAG
AAGGTTTGTGACCGCAGTTATGTTCCCTCCCCTTTACTTAGACCATGTTT
TGTGAGGGTGGGGAGGTTGATATAAAATTCGTACAAGTTTCAGAACTGCA
CAAGCCCCGAGGGGTATCTAGTGATAAGATTTGGGAGCCCCATCCATGAT
GGTTTTAACACGGTCTAGTTTCGACCTTCTTCGGCATTGCCATGAAAGGC
CCTCTTGGAGGGTGCTTTTTGAAGAAACAAAGTCAAGACCAGTC
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protein sequence of NO06G04160.1

>NO06G04160.1-protein ID=NO06G04160.1-protein|Name=NO06G04160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MVRFIQSPRPKSGRTVKMTSKVLSTEKRKQTQSKGGKQAIIDEEAQIKAL
EKKVAALRAARNQSKGATVANCAKRRERTNSSINSGSSKNGYSRAVLFTN
EEEEGEEEEEEAEEEEEEEEEEVKEEEEEKEPDALVCPLSLELLSKAVCA
ADGHTYNQDVLQAWIDRCRNDRKPLTSPLSGKPMQSFFLPNQLVKTLVRD
YTEAREKRENAKEGRGREGVSTNKWGKGKVWGSKKGKRQNTKENLKAPAK
AEVQKQKK*
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Synonyms
Publications