NO06G04160.1, NO06G04160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04160.1
Unique NameNO06G04160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1261
Alignment locationchr6:1159596..1161239 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1159596..1161239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G04160.1 vs.
Match: XP_005853577.1 (wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana CCMP526]; EKU22781.1 wd sam and u-box domain-containing protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.9 bits (167), Expect = 2.600e-8
Identity = 38/94 (40.43%), Postives = 61/94 (64.89%), Query Frame = 0 
Query:  116 EEEEEEEVKEEEEEKEPDALVCPLSLELLSKAVCAADGHTYNQDVLQAWIDRCRNDRKPLTSPLSGKPMQSFFLPNQLVKTLVRDYTE-AREKR 209
            E++ +  V+++  +K P A VCP+SLEL+++AV A DG  Y Q+ L  WI + R +  PL SP++  PM  F++P+  +++L+ DY E  R KR
Sbjct:  219 EDDVQLNVEDDLADKAPHAFVCPISLELMTRAVVAGDGFAYQQEALDEWILQKRREHSPLHSPMTNAPMAPFYIPSFTLRSLIGDYVEKVRTKR 312
The following BLAST results are available for this feature:
BLAST of NO06G04160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853577.12.600e-840.43wd sam and u-box domain-containing protein 1 [Nann... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04160NO06G04160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04160.1NO06G04160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04160.1.cds1NO06G04160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04160.1.cds2NO06G04160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04160.1.cds3NO06G04160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04160.1 ID=NO06G04160.1|Name=NO06G04160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
ACTACAGTTCCTGCGTTGAGCTCTTCGTGGCAGTCATGGTGCGATTCATA
CAATCACCGCGACCCAAATCAGGCAGGACGGTAAAGATGACAAGCAAAGT
CTTGTCCACCGAGAAACGCAAGCAGACCCAGAGCAAGGGTGGGAAGCAGG
CAATAATCGACGAGGAGGCCCAGATCAAAGCACTTGAGAAGAAGGTAGCG
GCATTGAGAGCTGCTCGAAATCAAAGCAAGGGTGCAACAGTGGCGAATTG
CGCGAAGAGGAGGGAACGGACGAATAGCAGCATCAACAGCGGCAGCAGTA
AGAATGGTTATTCACGTGCAGTGCTCTTTACCAATGAGGAAGAGGAAGGA
GAGGAGGAGGAGGAAGAGGCAGAAGAAGAGGAAGAAGAGGAGGAGGAAGA
GGTGAAAGAGGAGGAGGAGGAGAAGGAGCCGGACGCGCTGGTGTGCCCCC
TGTCCCTGGAACTTTTGTCCAAGGCCGTCTGTGCTGCGGACGGCCACACG
TACAATCAGGACGTGCTTCAGGCGTGGATTGACCGGTGCCGCAATGACCG
AAAGCCGCTCACCTCCCCTCTCTCAGGGAAGCCCATGCAGTCTTTCTTTC
TTCCTAATCAGCTGGTCAAGACATTGGTGCGCGATTATACTGAAGCACGG
GAAAAGCGGGAGAATGCAAAGGAGGGTAGGGGGAGAGAAGGGGTTTCGAC
GAATAAGTGGGGGAAAGGAAAAGTCTGGGGTTCCAAGAAGGGGAAAAGGC
AGAACACGAAGGAGAACCTGAAGGCACCAGCCAAGGCCGAGGTCCAGAAA
CAGAAGAAGTGAACAGAGACATGGCCAATGAACATATGAGCATATTCGTG
ATAAAGAGAAAAGGATTGTACACTTAAAACAAAAAGAGAGGAAATTTTGT
CCAGCCACTGCTAATTGCGGACGTAGGATAGCTGTAGGGGATAGAAAATT
GAAGCAGCAGCAGAGCTGCGACCAACAATACAATGTGTCATCAATTGTAG
GTTCAAAATCTCATCAGAAGGTTTGTGACCGCAGTTATGTTCCCTCCCCT
TTACTTAGACCATGTTTTGTGAGGGTGGGGAGGTTGATATAAAATTCGTA
CAAGTTTCAGAACTGCACAAGCCCCGAGGGGTATCTAGTGATAAGATTTG
GGAGCCCCATCCATGATGGTTTTAACACGGTCTAGTTTCGACCTTCTTCG
GCATTGCCATGAAAGGCCCTCTTGGAGGGTGCTTTTTGAAGAAACAAAGT
CAAGACCAGTC
back to top

protein sequence of NO06G04160.1

>NO06G04160.1-protein ID=NO06G04160.1-protein|Name=NO06G04160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MVRFIQSPRPKSGRTVKMTSKVLSTEKRKQTQSKGGKQAIIDEEAQIKAL
EKKVAALRAARNQSKGATVANCAKRRERTNSSINSGSSKNGYSRAVLFTN
EEEEGEEEEEEAEEEEEEEEEEVKEEEEEKEPDALVCPLSLELLSKAVCA
ADGHTYNQDVLQAWIDRCRNDRKPLTSPLSGKPMQSFFLPNQLVKTLVRD
YTEAREKRENAKEGRGREGVSTNKWGKGKVWGSKKGKRQNTKENLKAPAK
AEVQKQKK*
back to top

mRNA from alignment at chr6:1159596..1161239-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04160.1 ID=NO06G04160.1|Name=NO06G04160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp|location=Sequence derived from alignment at chr6:1159596..1161239- (Nannochloropsis oceanica)
ACTACAGTTCCTGCGTTGAGCTCTTCGTGGCAGTCATGGTGCGATTCATA
CAATCACCGCGACCCAAATCAGGCAGGACGGTAAAGATGACAAGCAAAGT
CTTGTCCACCGAGAAACGCAAGCAGACCCAGAGCAAGGGTGGGAAGCAGG
CAATAATGTGAGTAAGAATTGAAGGCGTTGGGAGCGAAGGCAAGGTAGTG
CATGAAGAAAGTGCGATTTGGAGAAGGCGGAGGGAGAAGGGATTGTAGGG
AGCCATGCGGAGACGAAGATTGCGGTTTGTGTTGGTAGCTGCAGTCTGTG
GGGCGTATCACGTGACGTGACTTCCCTTGCAGGCGGGCACTATACTTTCT
TCTATTTTCGTAACTCGTCTAACGTACCAATGCATACAGCGACGAGGAGG
CCCAGATCAAAGCACTTGAGAAGAAGGTAGCGGCATTGAGGTAGGGAAAA
TTTTCCATGTGCAAATCTCTACAGTCTAATCGTGGGTGCCATATTTTGGC
TTGCATAGAAGATTCTCTGCGATCTTACTTGTATCTTTTTCCTCCCTGCC
CTTCATTCTCTCCATCTCGTCACCACCTTTATCACCTCCAGAGCTGCTCG
AAATCAAAGCAAGGGTGCAACAGTGGCGAATTGCGCGAAGAGGAGGGAAC
GGACGAATAGCAGCATCAACAGCGGCAGCAGTAAGAATGGTTATTCACGT
GCAGTGCTCTTTACCAATGAGGAAGAGGAAGGAGAGGAGGAGGAGGAAGA
GGCAGAAGAAGAGGAAGAAGAGGAGGAGGAAGAGGTGAAAGAGGAGGAGG
AGGAGAAGGAGCCGGACGCGCTGGTGTGCCCCCTGTCCCTGGAACTTTTG
TCCAAGGCCGTCTGTGCTGCGGACGGCCACACGTACAATCAGGACGTGCT
TCAGGCGTGGATTGACCGGTGCCGCAATGACCGAAAGCCGCTCACCTCCC
CTCTCTCAGGGAAGCCCATGCAGTCTTTCTTTCTTCCTAATCAGCTGGTC
AAGACATTGGTGCGCGATTATACTGAAGCACGGGAAAAGCGGGAGAATGC
AAAGGAGGGTAGGGGGAGAGAAGGGGTTTCGACGAATAAGTGGGGGAAAG
GAAAAGTCTGGGGTTCCAAGAAGGGGAAAAGGCAGAACACGAAGGAGAAC
CTGAAGGCACCAGCCAAGGCCGAGGTCCAGAAACAGAAGAAGTGAACAGA
GACATGGCCAATGAACATATGAGCATATTCGTGATAAAGAGAAAAGGATT
GTACACTTAAAACAAAAAGAGAGGAAATTTTGTCCAGCCACTGCTAATTG
CGGACGTAGGATAGCTGTAGGGGATAGAAAATTGAAGCAGCAGCAGAGCT
GCGACCAACAATACAATGTGTCATCAATTGTAGGTTCAAAATCTCATCAG
AAGGTTTGTGACCGCAGTTATGTTCCCTCCCCTTTACTTAGACCATGTTT
TGTGAGGGTGGGGAGGTTGATATAAAATTCGTACAAGTTTCAGAACTGCA
CAAGCCCCGAGGGGTATCTAGTGATAAGATTTGGGAGCCCCATCCATGAT
GGTTTTAACACGGTCTAGTTTCGACCTTCTTCGGCATTGCCATGAAAGGC
CCTCTTGGAGGGTGCTTTTTGAAGAAACAAAGTCAAGACCAGTC
back to top

Coding sequence (CDS) from alignment at chr6:1159596..1161239-

>NO06G04160.1 ID=NO06G04160.1|Name=NO06G04160.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr6:1159596..1161239- (Nannochloropsis oceanica)
ATGGTGCGATTCATACAATCACCGCGACCCAAATCAGGCAGGACGGTAAA
GATGACAAGCAAAGTCTTGTCCACCGAGAAACGCAAGCAGACCCAGAGCA
AGGGTGGGAAGCAGGCAATAATCGACGAGGAGGCCCAGATCAAAGCACTT
GAGAAGAAGGTAGCGGCATTGAGAGCTGCTCGAAATCAAAGCAAGGGTGC
AACAGTGGCGAATTGCGCGAAGAGGAGGGAACGGACGAATAGCAGCATCA
ACAGCGGCAGCAGTAAGAATGGTTATTCACGTGCAGTGCTCTTTACCAAT
GAGGAAGAGGAAGGAGAGGAGGAGGAGGAAGAGGCAGAAGAAGAGGAAGA
AGAGGAGGAGGAAGAGGTGAAAGAGGAGGAGGAGGAGAAGGAGCCGGACG
CGCTGGTGTGCCCCCTGTCCCTGGAACTTTTGTCCAAGGCCGTCTGTGCT
GCGGACGGCCACACGTACAATCAGGACGTGCTTCAGGCGTGGATTGACCG
GTGCCGCAATGACCGAAAGCCGCTCACCTCCCCTCTCTCAGGGAAGCCCA
TGCAGTCTTTCTTTCTTCCTAATCAGCTGGTCAAGACATTGGTGCGCGAT
TATACTGAAGCACGGGAAAAGCGGGAGAATGCAAAGGAGGGTAGGGGGAG
AGAAGGGGTTTCGACGAATAAGTGGGGGAAAGGAAAAGTCTGGGGTTCCA
AGAAGGGGAAAAGGCAGAACACGAAGGAGAACCTGAAGGCACCAGCCAAG
GCCGAGGTCCAGAAACAGAAGAAGTGA
back to top
Synonyms
Publications