NO06G04030, NO06G04030 (gene) Nannochloropsis oceanica

Overview
NameNO06G04030
Unique NameNO06G04030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr6:1125898..1126860 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1125898..1126860 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G04030 vs. NCBI_GenBank
Match: XP_005852613.1 (hypothetical protein NGA_0717600 [Nannochloropsis gaditana CCMP526] >EKU23219.1 hypothetical protein NGA_0717600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 75.1 bits (183), Expect = 3.700e-10
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 0 
Query:  211 RPTVVSTGVVDAKGNIEKLDEFYYTDDIPLNVTALL-GEGGGQDMLDEFGGVALPQ 266
            RPTVVS GVV  +G +EKLDEF Y+D +P NVTA L G G GQ +LD+FGG+ALP+
Sbjct:   58 RPTVVSKGVVGPEGEVEKLDEFLYSDLVPGNVTAFLEGAGQGQSVLDDFGGIALPR 113

HSP 2 Score: 69.7 bits (169), Expect = 1.500e-8
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0 
Query:    1 MEENDFFSGKLYQEVDTAREDDARRMANGEPSYYEEVYGKKE 43
            MEE DFFSGKLY+E+D AREDD RR A+GEPSYYEE YG K+
Sbjct:   11 MEEMDFFSGKLYREIDAAREDDIRRAAHGEPSYYEEGYGAKD 52
The following BLAST results are available for this feature:
BLAST of NO06G04030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852613.13.700e-1064.29hypothetical protein NGA_0717600 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04030.1NO06G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04030.1NO06G04030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04030 ID=NO06G04030|Name=NO06G04030|organism=Nannochloropsis oceanica|type=gene|length=963bp
ATGGAGGAAAATGATTTCTTTTCAGgtaagacggaggggccgagggaggg
agagagtgagggaggacaggggaggaaaatattgaaacgaaaagagagtc
ttcacttacccttctcctccctcatatctatatatatatgtacactcatt
attcccctccctctgtctccctctttccttccatacgtagGAAAACTCTA
CCAGGAAGTGGATACCGCGCGAGAGGACGACGCCCGACGCATGGCCAATG
GGGAGCCTTCCTACTACGAGGAGGTATATGGGAAGAAAGAGAGGGAGGAG
GAGGAGGAAGGGTGGGAAAGCGTGGAGGAGGTGGAGGGAGAGTGGGAGGA
TGAGGATGAGGATGAGAATGATGACGACGATGATGTTTGGGACTGGAGAG
GGCTTGAGGGGGCGGGTGTGAAGAGGGGGGAGGAGGGGGGCCTTCACGAG
GAGGAGGAAGAGGAGAGCGAGGGGGACGATGAGGAAGAGGACAGCAGACG
GTCGGCTGGGGACCTGCAAACCCACCTCAAGAATGATCTGATGAAGGTCT
CCCCCCTCTCCTCCTCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
CCCTCGTCCTCTCCTCAACAGAGAGCTGCAGACAGAGACGGTGGTAGTAG
GAAATCTGACCGCAGCAGCCGCACGACCACGAGCAGCAGCAGCACAAGCC
GCAAGAGCAGCAGCAGCAGCCGCAAGAGCAGCAGCAGCAGCAGCAGCAGC
AGCAAGAGCAGCACAAGCCGCAAGGGCGAAAGCCGCGACAAAACCCGACC
CACCGTGGTGAGCACGGGTGTCGTGGACGCCAAGGGGAACATCGAGAAAT
TGGATGAGTTTTATTACACGGACGATATACCCTTGAATGTGACGGCCCTG
TTGGGGGAAGGGGGTGGACAAGACATGCTGGATGAATTTGGAGGGGTGGC
ATTGCCGCAGTGA
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protein sequence of NO06G04030.1

>NO06G04030.1-protein ID=NO06G04030.1-protein|Name=NO06G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MEENDFFSGKLYQEVDTAREDDARRMANGEPSYYEEVYGKKEREEEEEGW
ESVEEVEGEWEDEDEDENDDDDDVWDWRGLEGAGVKRGEEGGLHEEEEEE
SEGDDEEEDSRRSAGDLQTHLKNDLMKVSPLSSSPSSSSSSSSSSPSSSP
QQRAADRDGGSRKSDRSSRTTTSSSSTSRKSSSSSRKSSSSSSSSSKSST
SRKGESRDKTRPTVVSTGVVDAKGNIEKLDEFYYTDDIPLNVTALLGEGG
GQDMLDEFGGVALPQ*
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Synonyms
Publications