NO06G04030.1, NO06G04030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04030.1
Unique NameNO06G04030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length798
Alignment locationchr6:1125898..1126860 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1125898..1126860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G04030.1 vs.
Match: XP_005852613.1 (hypothetical protein NGA_0717600 [Nannochloropsis gaditana CCMP526]; EKU23219.1 hypothetical protein NGA_0717600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 74.7 bits (182), Expect = 4.800e-10
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 0 
Query:  211 RPTVVSTGVVDAKGNIEKLDEFYYTDDIPLNVTALL-GEGGGQDMLDEFGGVALPQ 266
            RPTVVS GVV  +G +EKLDEF Y+D +P NVTA L G G GQ +LD+FGG+ALP+
Sbjct:   58 RPTVVSKGVVGPEGEVEKLDEFLYSDLVPGNVTAFLEGAGQGQSVLDDFGGIALPR 113
The following BLAST results are available for this feature:
BLAST of NO06G04030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852613.14.800e-1064.29hypothetical protein NGA_0717600 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04030NO06G04030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04030.1NO06G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04030.1.cds1NO06G04030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04030.1.cds2NO06G04030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04030.1 ID=NO06G04030.1|Name=NO06G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
ATGGAGGAAAATGATTTCTTTTCAGGAAAACTCTACCAGGAAGTGGATAC
CGCGCGAGAGGACGACGCCCGACGCATGGCCAATGGGGAGCCTTCCTACT
ACGAGGAGGTATATGGGAAGAAAGAGAGGGAGGAGGAGGAGGAAGGGTGG
GAAAGCGTGGAGGAGGTGGAGGGAGAGTGGGAGGATGAGGATGAGGATGA
GAATGATGACGACGATGATGTTTGGGACTGGAGAGGGCTTGAGGGGGCGG
GTGTGAAGAGGGGGGAGGAGGGGGGCCTTCACGAGGAGGAGGAAGAGGAG
AGCGAGGGGGACGATGAGGAAGAGGACAGCAGACGGTCGGCTGGGGACCT
GCAAACCCACCTCAAGAATGATCTGATGAAGGTCTCCCCCCTCTCCTCCT
CGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCGTCCTCTCCT
CAACAGAGAGCTGCAGACAGAGACGGTGGTAGTAGGAAATCTGACCGCAG
CAGCCGCACGACCACGAGCAGCAGCAGCACAAGCCGCAAGAGCAGCAGCA
GCAGCCGCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGCAGCACA
AGCCGCAAGGGCGAAAGCCGCGACAAAACCCGACCCACCGTGGTGAGCAC
GGGTGTCGTGGACGCCAAGGGGAACATCGAGAAATTGGATGAGTTTTATT
ACACGGACGATATACCCTTGAATGTGACGGCCCTGTTGGGGGAAGGGGGT
GGACAAGACATGCTGGATGAATTTGGAGGGGTGGCATTGCCGCAGTGA
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protein sequence of NO06G04030.1

>NO06G04030.1-protein ID=NO06G04030.1-protein|Name=NO06G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MEENDFFSGKLYQEVDTAREDDARRMANGEPSYYEEVYGKKEREEEEEGW
ESVEEVEGEWEDEDEDENDDDDDVWDWRGLEGAGVKRGEEGGLHEEEEEE
SEGDDEEEDSRRSAGDLQTHLKNDLMKVSPLSSSPSSSSSSSSSSPSSSP
QQRAADRDGGSRKSDRSSRTTTSSSSTSRKSSSSSRKSSSSSSSSSKSST
SRKGESRDKTRPTVVSTGVVDAKGNIEKLDEFYYTDDIPLNVTALLGEGG
GQDMLDEFGGVALPQ*
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mRNA from alignment at chr6:1125898..1126860+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04030.1 ID=NO06G04030.1|Name=NO06G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=963bp|location=Sequence derived from alignment at chr6:1125898..1126860+ (Nannochloropsis oceanica)
ATGGAGGAAAATGATTTCTTTTCAGGTAAGACGGAGGGGCCGAGGGAGGG
AGAGAGTGAGGGAGGACAGGGGAGGAAAATATTGAAACGAAAAGAGAGTC
TTCACTTACCCTTCTCCTCCCTCATATCTATATATATATGTACACTCATT
ATTCCCCTCCCTCTGTCTCCCTCTTTCCTTCCATACGTAGGAAAACTCTA
CCAGGAAGTGGATACCGCGCGAGAGGACGACGCCCGACGCATGGCCAATG
GGGAGCCTTCCTACTACGAGGAGGTATATGGGAAGAAAGAGAGGGAGGAG
GAGGAGGAAGGGTGGGAAAGCGTGGAGGAGGTGGAGGGAGAGTGGGAGGA
TGAGGATGAGGATGAGAATGATGACGACGATGATGTTTGGGACTGGAGAG
GGCTTGAGGGGGCGGGTGTGAAGAGGGGGGAGGAGGGGGGCCTTCACGAG
GAGGAGGAAGAGGAGAGCGAGGGGGACGATGAGGAAGAGGACAGCAGACG
GTCGGCTGGGGACCTGCAAACCCACCTCAAGAATGATCTGATGAAGGTCT
CCCCCCTCTCCTCCTCGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
CCCTCGTCCTCTCCTCAACAGAGAGCTGCAGACAGAGACGGTGGTAGTAG
GAAATCTGACCGCAGCAGCCGCACGACCACGAGCAGCAGCAGCACAAGCC
GCAAGAGCAGCAGCAGCAGCCGCAAGAGCAGCAGCAGCAGCAGCAGCAGC
AGCAAGAGCAGCACAAGCCGCAAGGGCGAAAGCCGCGACAAAACCCGACC
CACCGTGGTGAGCACGGGTGTCGTGGACGCCAAGGGGAACATCGAGAAAT
TGGATGAGTTTTATTACACGGACGATATACCCTTGAATGTGACGGCCCTG
TTGGGGGAAGGGGGTGGACAAGACATGCTGGATGAATTTGGAGGGGTGGC
ATTGCCGCAGTGA
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Coding sequence (CDS) from alignment at chr6:1125898..1126860+

>NO06G04030.1 ID=NO06G04030.1|Name=NO06G04030.1|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at chr6:1125898..1126860+ (Nannochloropsis oceanica)
ATGGAGGAAAATGATTTCTTTTCAGGAAAACTCTACCAGGAAGTGGATAC
CGCGCGAGAGGACGACGCCCGACGCATGGCCAATGGGGAGCCTTCCTACT
ACGAGGAGGTATATGGGAAGAAAGAGAGGGAGGAGGAGGAGGAAGGGTGG
GAAAGCGTGGAGGAGGTGGAGGGAGAGTGGGAGGATGAGGATGAGGATGA
GAATGATGACGACGATGATGTTTGGGACTGGAGAGGGCTTGAGGGGGCGG
GTGTGAAGAGGGGGGAGGAGGGGGGCCTTCACGAGGAGGAGGAAGAGGAG
AGCGAGGGGGACGATGAGGAAGAGGACAGCAGACGGTCGGCTGGGGACCT
GCAAACCCACCTCAAGAATGATCTGATGAAGGTCTCCCCCCTCTCCTCCT
CGCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCGTCCTCTCCT
CAACAGAGAGCTGCAGACAGAGACGGTGGTAGTAGGAAATCTGACCGCAG
CAGCCGCACGACCACGAGCAGCAGCAGCACAAGCCGCAAGAGCAGCAGCA
GCAGCCGCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGCAGCACA
AGCCGCAAGGGCGAAAGCCGCGACAAAACCCGACCCACCGTGGTGAGCAC
GGGTGTCGTGGACGCCAAGGGGAACATCGAGAAATTGGATGAGTTTTATT
ACACGGACGATATACCCTTGAATGTGACGGCCCTGTTGGGGGAAGGGGGT
GGACAAGACATGCTGGATGAATTTGGAGGGGTGGCATTGCCGCAGTGA
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Synonyms
Publications