NO06G03990, NO06G03990 (gene) Nannochloropsis oceanica

Overview
NameNO06G03990
Unique NameNO06G03990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length986
Alignment locationchr6:1118493..1119478 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1118493..1119478 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel
Homology
BLAST of NO06G03990 vs. NCBI_GenBank
Match: EWM26395.1 (hypothetical protein Naga_100715g3 [Nannochloropsis gaditana])

HSP 1 Score: 417.2 bits (1071), Expect = 3.600e-113
Identity = 195/245 (79.59%), Postives = 216/245 (88.16%), Query Frame = 0
Query:    1 MQQPSVQKIAERPATLTPEPAIFCIKTFMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHFHVLIPGVLQTTGAMAKIVAVKPHTGKLNDLVAQLKKHDVALYKAGYTTERPVMHMRGEKEGHLVEIAEWTSLEKVKEAQSSEIVQGLWNDFNVSVEHNCPLTCLPEAKDRYSLFPAITLHTLSE 246
            M Q SVQK AERPATL PEPAIFCIKTFMPHPG E++LE RL++HWDALHAAGLT PNQEPLFLRSRAGRVL+VFEWKD E++EEAHRR EL  TWK LL++ TMVPLASLGE +EPYAHFHV+ PG  +    M KIVAVKPHTGKLNDL+A+LKKHDVAL KAGYTT RP MHMRGEKEGH+VE+AEW S++KVKEAQ S+ V GLWN+FNVSVEHNCPLTCLPEAKDRYSLFPAITLHT+SE
Sbjct:    1 MHQSSVQKEAERPATLRPEPAIFCIKTFMPHPGQEKELETRLQKHWDALHAAGLTVPNQEPLFLRSRAGRVLEVFEWKDAEAMEEAHRRGELQDTWKKLLEVGTMVPLASLGECSEPYAHFHVVQPGTHEVKDKMVKIVAVKPHTGKLNDLIAKLKKHDVALRKAGYTTGRPAMHMRGEKEGHVVEVAEWASVQKVKEAQKSDDVHGLWNEFNVSVEHNCPLTCLPEAKDRYSLFPAITLHTMSE 245          
BLAST of NO06G03990 vs. NCBI_GenBank
Match: SEN53122.1 (Antibiotic biosynthesis monooxygenase [Paenibacillus sp. OV219])

HSP 1 Score: 81.6 bits (200), Expect = 3.600e-12
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = 0
Query:   22 IFCIKTFMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHFHVL 125
            I  I T+ PHPG E+ L+  ++ H   L A GL      PL L++  G +L++FEW   E+ + AHR   + + W  L+++A M  LASL E+ +P+++F  L
Sbjct:    7 IVAIATYRPHPGKEEQLKDIVRRHLPTLRAEGLIT-EMTPLHLQAEDGSILEIFEWASAEAKDAAHRSPAVREVWGVLMEVAEMTALASLAEAAQPFSNFRKL 108          
BLAST of NO06G03990 vs. NCBI_GenBank
Match: WP_090575682.1 (hypothetical protein [Paenibacillus sp. OV219])

HSP 1 Score: 81.6 bits (200), Expect = 3.600e-12
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = 0
Query:   22 IFCIKTFMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHFHVL 125
            I  I T+ PHPG E+ L+  ++ H   L A GL      PL L++  G +L++FEW   E+ + AHR   + + W  L+++A M  LASL E+ +P+++F  L
Sbjct:    5 IVAIATYRPHPGKEEQLKDIVRRHLPTLRAEGLIT-EMTPLHLQAEDGSILEIFEWASAEAKDAAHRSPAVREVWGVLMEVAEMTALASLAEAAQPFSNFRKL 106          
BLAST of NO06G03990 vs. NCBI_GenBank
Match: WP_006040721.1 (hypothetical protein [Paenibacillus curdlanolyticus] >EFM08450.1 conserved hypothetical protein [Paenibacillus curdlanolyticus YK9])

HSP 1 Score: 75.5 bits (184), Expect = 2.600e-10
Identity = 36/100 (36.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:   23 FCIKTFMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLF-LRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHF 122
            F I  + P+PG E +L   +KEH  AL   GL    + PL  L    G ++++FEWK  E++ +AH+   +   W+ ++ +A M  LASL E+N+P+ +F
Sbjct:    6 FAIALYRPNPGKENELRAIVKEHEPALRQEGLI--TEHPLTRLEGADGTIIEMFEWKSAEAMHQAHKSPVIWPIWERMMAVAEMANLASLQEANQPFPNF 103          
BLAST of NO06G03990 vs. NCBI_GenBank
Match: OLD82197.1 (hypothetical protein AUF67_05200 [Acidobacteria bacterium 13_1_20CM_58_21])

HSP 1 Score: 75.1 bits (183), Expect = 3.400e-10
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 0
Query:   28 FMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHF 122
            + P PG  + L    + H   L A GL  P +E + + +  G +++VFEWK KE+IE AH+   +   WK   D+   VP+AS+ E+ + +A F
Sbjct:    9 YKPKPGKAEALRSLARTHIQGLRAEGLVTP-REAIIMEANDGTIIEVFEWKSKEAIESAHKNLAVQALWKGFSDVCDYVPVASIAEAKQLFAEF 101          
BLAST of NO06G03990 vs. NCBI_GenBank
Match: WP_066287195.1 (hypothetical protein [Fictibacillus arsenicus] >ANX11397.1 hypothetical protein ABE41_005210 [Fictibacillus arsenicus])

HSP 1 Score: 74.7 bits (182), Expect = 4.400e-10
Identity = 32/101 (31.68%), Postives = 59/101 (58.42%), Query Frame = 0
Query:   21 AIFCIKTFMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHF 122
            A+  +  + PH G E+ L   L+ H   L A  L   ++EP+  R+  G V+++FEW+ +++ + AH    + + W  +++IA +  L+SLGE+N P+ +F
Sbjct:    3 ALITMALYQPHEGKEEQLNEVLRNHIKTLEAENLIT-SREPIRARAANGTVIEIFEWRSEQAKDAAHESPGVMRVWNEIMEIAEIKSLSSLGEANHPFPNF 102          
BLAST of NO06G03990 vs. NCBI_GenBank
Match: WP_026566901.1 (hypothetical protein [Bacillus sp. UNC41MFS5])

HSP 1 Score: 69.3 bits (168), Expect = 1.900e-8
Identity = 31/97 (31.96%), Postives = 58/97 (59.79%), Query Frame = 0
Query:   28 FMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHFHVL 125
            + PHPG E++L+  LK H   L    L   ++E L L++  G ++++ EW+  E+IE+AH+ S++   W  + D++ +  L++L E+  P+ +F  L
Sbjct:   10 YRPHPGKEEELKELLKVHIPTLREEELIT-SRELLTLQAEDGTIIEIAEWRSTEAIEKAHQSSKVMAVWNKIGDLSELTSLSTLAEAQHPFPNFKPL 105          
BLAST of NO06G03990 vs. NCBI_GenBank
Match: WP_090638998.1 (hypothetical protein [Bacillus sp. LF1] >CRK84756.1 hypothetical protein BN000_04806 [Bacillus sp. LF1])

HSP 1 Score: 68.9 bits (167), Expect = 2.400e-8
Identity = 32/97 (32.99%), Postives = 55/97 (56.70%), Query Frame = 0
Query:   28 FMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHFHVL 125
            + P PG E +L+  LK H   L   GL   N+E L L++  G ++++ EWK  ES E+AH+ + +   W  +  +A +   +SL E+++P+ +F  L
Sbjct:   10 YRPKPGKENELKEILKIHIPTLREEGLIT-NRELLTLQAEDGTIIEIAEWKSNESKEKAHQSANVMSVWNKISSVAEITSFSSLAEAHKPFPNFKAL 105          
BLAST of NO06G03990 vs. NCBI_GenBank
Match: WP_065999234.1 (hypothetical protein [Mucilaginibacter sp. PPCGB 2223] >OCX52938.1 hypothetical protein BEL04_01010 [Mucilaginibacter sp. PPCGB 2223])

HSP 1 Score: 67.0 bits (162), Expect = 9.200e-8
Identity = 31/97 (31.96%), Postives = 54/97 (55.67%), Query Frame = 0
Query:   25 IKTFMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHF 122
            I  + P PG E +L+  ++ H   LH  GL   +++P+   +  G +++VFEW   ++I++AH   E+HK W    +    VPL +L E+ + +A F
Sbjct:   11 IVAYRPKPGKEAELKKVVESHVPDLHKLGLVT-DRKPVICEAADGTIIEVFEWLSVDAIKQAHSNPEVHKIWAAFGECCDCVPLNTLKETGDMFAGF 106          
BLAST of NO06G03990 vs. NCBI_GenBank
Match: WP_098528143.1 (MULTISPECIES: hypothetical protein [Bacillus] >PFO06568.1 hypothetical protein COJ85_06545 [Bacillus sp. AFS076308] >PGV52879.1 hypothetical protein COD92_09380 [Bacillus sp. AFS037270])

HSP 1 Score: 67.0 bits (162), Expect = 9.200e-8
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 0
Query:   28 FMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHFHVL 125
            + P  G E +L+  LK H   L   GL   N+E L L++  G ++++ EWK  E+IE AH+ + +   W  +  +A +  L+SL E+  P+ +F  L
Sbjct:   10 YRPKSGKENELKEILKVHIPTLREEGLIT-NRELLTLQAEDGTIIEIAEWKSNEAIENAHQSANVMSVWNKISSVAELTSLSSLAEAQVPFPNFKPL 105          
The following BLAST results are available for this feature:
BLAST of NO06G03990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
EWM26395.13.600e-11379.59hypothetical protein Naga_100715g3 [Nannochloropsi... [more]
SEN53122.13.600e-1236.89Antibiotic biosynthesis monooxygenase [Paenibacill... [more]
WP_090575682.13.600e-1236.89hypothetical protein [Paenibacillus sp. OV219][more]
WP_006040721.12.600e-1036.00hypothetical protein [Paenibacillus curdlanolyticu... [more]
OLD82197.13.400e-1035.11hypothetical protein AUF67_05200 [Acidobacteria ba... [more]
WP_066287195.14.400e-1031.68hypothetical protein [Fictibacillus arsenicus] >AN... [more]
WP_026566901.11.900e-831.96hypothetical protein [Bacillus sp. UNC41MFS5][more]
WP_090638998.12.400e-832.99hypothetical protein [Bacillus sp. LF1] >CRK84756.... [more]
WP_065999234.19.200e-831.96hypothetical protein [Mucilaginibacter sp. PPCGB 2... [more]
WP_098528143.19.200e-832.99MULTISPECIES: hypothetical protein [Bacillus] >PFO... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000074NSK000074Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03990.1NO06G03990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651801gene_6731Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100715g3gene4134Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03990.1NO06G03990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03990 ID=NO06G03990|Name=NO06G03990|organism=Nannochloropsis oceanica|type=gene|length=986bp
ATGCAGCAGCCGTCCGTGCAAAAAATAGCGGAGCGCCCCGCCACCTTGAC
ACCCGAGCCCGCAATTTTCTGCATTAAGACATTTATGCCGCATCCTGGTC
ATGAGCAGGATCTGGAAGTTCGACTGAAAGAGCACTGGGATGCGTTGCAC
GCGGCTGGCTTGACGGCACCCAACCAAGAGCCTTTGTTCCTCCGCAGCCG
CGCCGGAAGGGTCTTGAAAGTCTTTGAATGGAAAGATAAAGAATCCATTG
AAGAAGCTCACCGTCGAAGTGAGCTGCACAAAACATGGAAAAATTTATTG
GATATTGCAACAATGGTGCCGCTGGCGTCCTTGGGGGAGAGCAACGAGCC
TTACGCGCATTTCCATGTCCTCATTCCTGGGGTTCTACAGACCACGGGGG
CTATGGCCAAGATTGTTGCGGTCAAACCTCACACTGGAAAATTGAACGAC
CTGGTTGCCCAGCTGAAGAAGCACGACGTGGCGCTGTACAAGGCGGGGTA
TACGACAGAGCGGCCAGTGATGCACATGCGCGGAGAGAAGGAGGGACATT
TGGTGGAGATTGCGGAATGGACATCTTTGGAGAAGGTAAAGGAAGCTCAG
TCGAGCGAAATTGTGCAAGGCCTGTGGAATGACTTTAATGTGTCGGTGGA
GCATAATTGCCCTTTGACTTGCTTGCCTGAGGCAAAGGACCGGTACTCGC
TGTTTCCCGCCATAACCCTCCACACGTTGAGTGAGTGAGGGAGTGTGAGG
GAGAGGAGGAAACAGAAATCGAAAGTGAGCCACTGGGGCGCAGAGACAAC
AAGGAGAGATGAGATGAATAGGGAATAAAACACGCAATCTACGTTGGTAG
CAGAGGCAGATAGATGGTTGGGGCGCAGGAGAGGTGATGAGAAAGCAAAC
AATAACACAACGCACAGAGCAAGAGAAAACTCAGTATACGGAGCAGCAGT
CGAAATCGCCCTCCCTCTAAAAATACTTGCAAAGAG
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protein sequence of NO06G03990.1

>NO06G03990.1-protein ID=NO06G03990.1-protein|Name=NO06G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MQQPSVQKIAERPATLTPEPAIFCIKTFMPHPGHEQDLEVRLKEHWDALH
AAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLL
DIATMVPLASLGESNEPYAHFHVLIPGVLQTTGAMAKIVAVKPHTGKLND
LVAQLKKHDVALYKAGYTTERPVMHMRGEKEGHLVEIAEWTSLEKVKEAQ
SSEIVQGLWNDFNVSVEHNCPLTCLPEAKDRYSLFPAITLHTLSE*
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Synonyms
Publications