NO06G03990.1, NO06G03990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03990.1
Unique NameNO06G03990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length986
Alignment locationchr6:1118493..1119478 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1118493..1119478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03990.1 vs.
Match: EWM26395.1 (hypothetical protein Naga_100715g3 [Nannochloropsis gaditana])

HSP 1 Score: 417.2 bits (1071), Expect = 3.600e-113
Identity = 195/245 (79.59%), Postives = 216/245 (88.16%), Query Frame = 0 
Query:    1 MQQPSVQKIAERPATLTPEPAIFCIKTFMPHPGHEQDLEVRLKEHWDALHAAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLLDIATMVPLASLGESNEPYAHFHVLIPGVLQTTGAMAKIVAVKPHTGKLNDLVAQLKKHDVALYKAGYTTERPVMHMRGEKEGHLVEIAEWTSLEKVKEAQSSEIVQGLWNDFNVSVEHNCPLTCLPEAKDRYSLFPAITLHTLSE 246
            M Q SVQK AERPATL PEPAIFCIKTFMPHPG E++LE RL++HWDALHAAGLT PNQEPLFLRSRAGRVL+VFEWKD E++EEAHRR EL  TWK LL++ TMVPLASLGE +EPYAHFHV+ PG  +    M KIVAVKPHTGKLNDL+A+LKKHDVAL KAGYTT RP MHMRGEKEGH+VE+AEW S++KVKEAQ S+ V GLWN+FNVSVEHNCPLTCLPEAKDRYSLFPAITLHT+SE
Sbjct:    1 MHQSSVQKEAERPATLRPEPAIFCIKTFMPHPGQEKELETRLQKHWDALHAAGLTVPNQEPLFLRSRAGRVLEVFEWKDAEAMEEAHRRGELQDTWKKLLEVGTMVPLASLGECSEPYAHFHVVQPGTHEVKDKMVKIVAVKPHTGKLNDLIAKLKKHDVALRKAGYTTGRPAMHMRGEKEGHVVEVAEWASVQKVKEAQKSDDVHGLWNEFNVSVEHNCPLTCLPEAKDRYSLFPAITLHTMSE 245
The following BLAST results are available for this feature:
BLAST of NO06G03990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26395.13.600e-11379.59hypothetical protein Naga_100715g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03990NO06G03990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03990.1NO06G03990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03990.1.cds1NO06G03990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03990.1 ID=NO06G03990.1|Name=NO06G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=986bp
ATGCAGCAGCCGTCCGTGCAAAAAATAGCGGAGCGCCCCGCCACCTTGAC
ACCCGAGCCCGCAATTTTCTGCATTAAGACATTTATGCCGCATCCTGGTC
ATGAGCAGGATCTGGAAGTTCGACTGAAAGAGCACTGGGATGCGTTGCAC
GCGGCTGGCTTGACGGCACCCAACCAAGAGCCTTTGTTCCTCCGCAGCCG
CGCCGGAAGGGTCTTGAAAGTCTTTGAATGGAAAGATAAAGAATCCATTG
AAGAAGCTCACCGTCGAAGTGAGCTGCACAAAACATGGAAAAATTTATTG
GATATTGCAACAATGGTGCCGCTGGCGTCCTTGGGGGAGAGCAACGAGCC
TTACGCGCATTTCCATGTCCTCATTCCTGGGGTTCTACAGACCACGGGGG
CTATGGCCAAGATTGTTGCGGTCAAACCTCACACTGGAAAATTGAACGAC
CTGGTTGCCCAGCTGAAGAAGCACGACGTGGCGCTGTACAAGGCGGGGTA
TACGACAGAGCGGCCAGTGATGCACATGCGCGGAGAGAAGGAGGGACATT
TGGTGGAGATTGCGGAATGGACATCTTTGGAGAAGGTAAAGGAAGCTCAG
TCGAGCGAAATTGTGCAAGGCCTGTGGAATGACTTTAATGTGTCGGTGGA
GCATAATTGCCCTTTGACTTGCTTGCCTGAGGCAAAGGACCGGTACTCGC
TGTTTCCCGCCATAACCCTCCACACGTTGAGTGAGTGAGGGAGTGTGAGG
GAGAGGAGGAAACAGAAATCGAAAGTGAGCCACTGGGGCGCAGAGACAAC
AAGGAGAGATGAGATGAATAGGGAATAAAACACGCAATCTACGTTGGTAG
CAGAGGCAGATAGATGGTTGGGGCGCAGGAGAGGTGATGAGAAAGCAAAC
AATAACACAACGCACAGAGCAAGAGAAAACTCAGTATACGGAGCAGCAGT
CGAAATCGCCCTCCCTCTAAAAATACTTGCAAAGAG
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protein sequence of NO06G03990.1

>NO06G03990.1-protein ID=NO06G03990.1-protein|Name=NO06G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MQQPSVQKIAERPATLTPEPAIFCIKTFMPHPGHEQDLEVRLKEHWDALH
AAGLTAPNQEPLFLRSRAGRVLKVFEWKDKESIEEAHRRSELHKTWKNLL
DIATMVPLASLGESNEPYAHFHVLIPGVLQTTGAMAKIVAVKPHTGKLND
LVAQLKKHDVALYKAGYTTERPVMHMRGEKEGHLVEIAEWTSLEKVKEAQ
SSEIVQGLWNDFNVSVEHNCPLTCLPEAKDRYSLFPAITLHTLSE*
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mRNA from alignment at chr6:1118493..1119478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03990.1 ID=NO06G03990.1|Name=NO06G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=986bp|location=Sequence derived from alignment at chr6:1118493..1119478+ (Nannochloropsis oceanica)
ATGCAGCAGCCGTCCGTGCAAAAAATAGCGGAGCGCCCCGCCACCTTGAC
ACCCGAGCCCGCAATTTTCTGCATTAAGACATTTATGCCGCATCCTGGTC
ATGAGCAGGATCTGGAAGTTCGACTGAAAGAGCACTGGGATGCGTTGCAC
GCGGCTGGCTTGACGGCACCCAACCAAGAGCCTTTGTTCCTCCGCAGCCG
CGCCGGAAGGGTCTTGAAAGTCTTTGAATGGAAAGATAAAGAATCCATTG
AAGAAGCTCACCGTCGAAGTGAGCTGCACAAAACATGGAAAAATTTATTG
GATATTGCAACAATGGTGCCGCTGGCGTCCTTGGGGGAGAGCAACGAGCC
TTACGCGCATTTCCATGTCCTCATTCCTGGGGTTCTACAGACCACGGGGG
CTATGGCCAAGATTGTTGCGGTCAAACCTCACACTGGAAAATTGAACGAC
CTGGTTGCCCAGCTGAAGAAGCACGACGTGGCGCTGTACAAGGCGGGGTA
TACGACAGAGCGGCCAGTGATGCACATGCGCGGAGAGAAGGAGGGACATT
TGGTGGAGATTGCGGAATGGACATCTTTGGAGAAGGTAAAGGAAGCTCAG
TCGAGCGAAATTGTGCAAGGCCTGTGGAATGACTTTAATGTGTCGGTGGA
GCATAATTGCCCTTTGACTTGCTTGCCTGAGGCAAAGGACCGGTACTCGC
TGTTTCCCGCCATAACCCTCCACACGTTGAGTGAGTGAGGGAGTGTGAGG
GAGAGGAGGAAACAGAAATCGAAAGTGAGCCACTGGGGCGCAGAGACAAC
AAGGAGAGATGAGATGAATAGGGAATAAAACACGCAATCTACGTTGGTAG
CAGAGGCAGATAGATGGTTGGGGCGCAGGAGAGGTGATGAGAAAGCAAAC
AATAACACAACGCACAGAGCAAGAGAAAACTCAGTATACGGAGCAGCAGT
CGAAATCGCCCTCCCTCTAAAAATACTTGCAAAGAG
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Coding sequence (CDS) from alignment at chr6:1118493..1119478+

>NO06G03990.1 ID=NO06G03990.1|Name=NO06G03990.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr6:1118493..1119478+ (Nannochloropsis oceanica)
ATGCAGCAGCCGTCCGTGCAAAAAATAGCGGAGCGCCCCGCCACCTTGAC
ACCCGAGCCCGCAATTTTCTGCATTAAGACATTTATGCCGCATCCTGGTC
ATGAGCAGGATCTGGAAGTTCGACTGAAAGAGCACTGGGATGCGTTGCAC
GCGGCTGGCTTGACGGCACCCAACCAAGAGCCTTTGTTCCTCCGCAGCCG
CGCCGGAAGGGTCTTGAAAGTCTTTGAATGGAAAGATAAAGAATCCATTG
AAGAAGCTCACCGTCGAAGTGAGCTGCACAAAACATGGAAAAATTTATTG
GATATTGCAACAATGGTGCCGCTGGCGTCCTTGGGGGAGAGCAACGAGCC
TTACGCGCATTTCCATGTCCTCATTCCTGGGGTTCTACAGACCACGGGGG
CTATGGCCAAGATTGTTGCGGTCAAACCTCACACTGGAAAATTGAACGAC
CTGGTTGCCCAGCTGAAGAAGCACGACGTGGCGCTGTACAAGGCGGGGTA
TACGACAGAGCGGCCAGTGATGCACATGCGCGGAGAGAAGGAGGGACATT
TGGTGGAGATTGCGGAATGGACATCTTTGGAGAAGGTAAAGGAAGCTCAG
TCGAGCGAAATTGTGCAAGGCCTGTGGAATGACTTTAATGTGTCGGTGGA
GCATAATTGCCCTTTGACTTGCTTGCCTGAGGCAAAGGACCGGTACTCGC
TGTTTCCCGCCATAACCCTCCACACGTTGAGTGAGTGA
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Synonyms
Publications