NO06G03610, NO06G03610 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G03610 vs. NCBI_GenBank
Match: EWM26387.1 (polyadenylate-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 186.8 bits (473), Expect = 8.700e-44 Identity = 97/148 (65.54%), Postives = 114/148 (77.03%), Query Frame = 0 Query: 43 MKRGRIEEPVVSVGGTKATPAAPDLADDPLAGRASPTLFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGGNGARSMVFKARAKSIQQ--GGRRDGR 189 MKR R E G D A+DPLAGR P LF+GSLAKSVQEKDVL LFLP+GK+VDIAFFWHMHGPRKGEPKG+CF+T+A TE+AT+AI+AL+ RLHGR+IAVRYQRDAD+ AR+++ KARAKS+QQ GG R GR Sbjct: 1 MKRRREE------GAGARNAGKDDPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYARTEEATSAIRALDRRRLHGRSIAVRYQRDADDMNMDARTLLSKARAKSLQQSGGGGRGGR 142
BLAST of NO06G03610 vs. NCBI_GenBank
Match: XP_005852688.1 (hypothetical protein NGA_2120320, partial [Nannochloropsis gaditana CCMP526] >XP_005855784.1 hypothetical protein NGA_2120310, partial [Nannochloropsis gaditana CCMP526] >EKU20575.1 hypothetical protein NGA_2120310, partial [Nannochloropsis gaditana CCMP526] >EKU23145.1 hypothetical protein NGA_2120320, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 171.8 bits (434), Expect = 2.900e-39 Identity = 80/110 (72.73%), Postives = 97/110 (88.18%), Query Frame = 0 Query: 66 DLADDPLAGRASPTLFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGGNGARSMVFKAR 176 D A+DPLAGR P LF+GSLAKSVQEKDVL LFLP+GK+VDIAFFWHMHGPRKGEPKG+CF+T++ TE+AT+AI+AL+ RLHGR+IAVRYQRDAD+ AR+++ KAR Sbjct: 2 DPAEDPLAGRPGPKLFIGSLAKSVQEKDVLNLFLPYGKVVDIAFFWHMHGPRKGEPKGFCFVTYSGTEEATSAIRALDRRRLHGRSIAVRYQRDADDTNMDARTLLSKAR 111
BLAST of NO06G03610 vs. NCBI_GenBank
Match: CBN75336.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 85.1 bits (209), Expect = 3.600e-13 Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 0 Query: 74 GRASPTLFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEG 164 G + TLFVG+L+ V E ++ LF PFGK+V F +H GPR GEP+G+CF+ +++ +DA AI+AL+ +L+GR + VR+ +G Sbjct: 122 GIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKG 211
BLAST of NO06G03610 vs. NCBI_GenBank
Match: XP_016607667.1 (hypothetical protein SPPG_05013 [Spizellomyces punctatus DAOM BR117] >KNC99627.1 hypothetical protein SPPG_05013 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 84.7 bits (208), Expect = 4.700e-13 Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 0 Query: 62 PAAPDLADDPLAGRASPT----LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGG 165 PA P P+ T L+VG+L ++ E +++TLF P GKI I + WH HGPRKGEP+GYCF+ + DA A+ A+N + GR + V + D + G Sbjct: 28 PAPPPSVPAPITNVTPNTPQTRLYVGNLPPTLTEYNLITLFAPHGKIRKIDYLWHKHGPRKGEPRGYCFVEYERRVDAVGAVAAMNGRVVGGRKLTVGFSVDHGQDG 134
BLAST of NO06G03610 vs. NCBI_GenBank
Match: SAM02948.1 (hypothetical protein [Absidia glauca]) HSP 1 Score: 82.0 bits (201), Expect = 3.000e-12 Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 0 Query: 80 LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGGNGARS 170 L++G+L +V E V+ LF P+GKIV F + +HGP+KG+P+GYCFL + +DA AAI A+N ++ GR + V + + G S Sbjct: 6 LYIGNLDSTVDEYAVIKLFEPYGKIVVFEFMFFLHGPKKGQPRGYCFLEYEKRQDALAAISAMNGKKIKGRPMVVSAANKSTQPEGGGNS 95
BLAST of NO06G03610 vs. NCBI_GenBank
Match: ORZ21081.1 (hypothetical protein BCR42DRAFT_406783 [Absidia repens]) HSP 1 Score: 80.9 bits (198), Expect = 6.700e-12 Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 0 Query: 80 LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAV 155 +++G+L SV E V+ LF PFGKIV F + +HGP+KG+P+GYCFL + +A AI ALN R+ GR + V Sbjct: 6 IYIGNLDPSVDEYAVIKLFEPFGKIVVFDFMFFLHGPKKGQPRGYCFLEYEKKPEALTAISALNGKRIKGRPLVV 80
BLAST of NO06G03610 vs. NCBI_GenBank
Match: OZJ03837.1 (hypothetical protein BZG36_04312 [Bifiguratus adelaidae]) HSP 1 Score: 80.1 bits (196), Expect = 1.100e-11 Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = 0 Query: 80 LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRY-----QRDADEGGN 166 L+VG+L ++ E ++ LF PFGKI + F +H+ GPRKG+P+GYCFL +A+ +A AI A++ + GR + V + +D D+ G+ Sbjct: 11 LYVGNLDSTIDEYSIVKLFEPFGKITSLDFLFHLTGPRKGQPRGYCFLEYANKTEALQAISAMHRKTIKGRPLVVTFAHAAKDQDRDQKGS 101
BLAST of NO06G03610 vs. NCBI_GenBank
Match: XP_020585709.1 (probable RNA-binding protein 18 [Phalaenopsis equestris] >XP_020585710.1 probable RNA-binding protein 18 [Phalaenopsis equestris]) HSP 1 Score: 79.7 bits (195), Expect = 1.500e-11 Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 0 Query: 80 LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADE 163 L+VG+L + + E +V+ +F PFGKI+ F WH GP+KGEP+GY F+ + E+A A +N +GR + VRY ADE Sbjct: 10 LYVGNLDQRITEANVIKMFSPFGKIISEDFLWHTRGPKKGEPRGYAFIQYGSKEEAQLAKTEMNGKLAYGRPLVVRY---ADE 89
BLAST of NO06G03610 vs. NCBI_GenBank
Match: KXS13582.1 (RNA-binding domain-containing protein [Gonapodya prolifera JEL478]) HSP 1 Score: 79.3 bits (194), Expect = 2.000e-11 Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 0 Query: 73 AGRASPT-----LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRD 160 A R +PT L++G++ SV E ++ LF PFGKI I + WH +GP +G+PKG+CFL + E+A AIK+++ ++ G+ + V + D Sbjct: 35 AERRAPTILDKRLYIGNIDSSVAEYHIIKLFQPFGKITRIDYMWHKYGPHRGQPKGFCFLEYETHENAMNAIKSMDGKQVKGKHLVVSFSFD 126
BLAST of NO06G03610 vs. NCBI_GenBank
Match: OSD07902.1 (RNA-binding domain-containing protein [Trametes coccinea BRFM310]) HSP 1 Score: 78.2 bits (191), Expect = 4.400e-11 Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0 Query: 80 LFVGSLAKSVQEKDVLTLFLPFGKIVDIAFFWHMHGPRKGEPKGYCFLTFAHTEDATAAIKALNDVRLHGRAIAVRYQRDADEGGNGARSMVFKAR 176 L+VG+L +V E +L LF FGKI + F +H GP KG+P+GY F+ FA+ DA A+ ND L GR I V Y A GA+ + K R Sbjct: 67 LYVGNLHPTVDEYTLLQLFSKFGKIAKLDFLFHKSGPLKGKPRGYAFIEFANQGDAEKALLHANDKLLRGRKIVVTYANQAPLDAGGAQGLGSKNR 162 The following BLAST results are available for this feature:
BLAST of NO06G03610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G03610 ID=NO06G03610|Name=NO06G03610|organism=Nannochloropsis oceanica|type=gene|length=2279bpback to top protein sequence of NO06G03610.1 >NO06G03610.1-protein ID=NO06G03610.1-protein|Name=NO06G03610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bpback to top Synonyms
Publications
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